The York Research Database

TIME FOR COFFEE regulates phytochrome A-mediated hypocotyl growth through dawn-phased signaling

Wang, Y., Su, C., Yu, Y., He, Y., Wei, H., Li, N., Li, H., Duan, J., Li, B., Li, J., Davis, S. J. & Wang, L., 6 May 2022, (Accepted/In press)

Article in The Plant Cell

A recombineering pipeline to clone large and complex genes in Chlamydomonas

Emrich-Mills, T. Z., Yates, G., Barrett, J., Girr, P., Grouneva, I., Lau, C. S., Walker, C. E., Kwok, T. K., Davey, J. W., Johnson, M. P. & Mackinder, L., 2 Feb 2021, (E-pub ahead of print)

Article in The Plant Cell

Single-Organelle Quantification Reveals Stoichiometric and Structural Variability of Carboxysomes Dependent on the Environment

Sun, Y., Wollman, A., Huang, F., Leake, M. C. & Liu, L-N., 1 Jul 2019

Article in The Plant Cell

Architecture and dynamics of the jasmonic acid gene regulatory network

Hickman, R., Van Verk, M. C., Van Dijken, A. J. H., Pereira Mendes, M., Vroegop-Vos, I. A., Caarls, L., Steenbergen, M., Van der Nagel, I., Wesselink, G. J., Jironkin, A., Talbot, A., Rhodes, J., De Vries, M., Schuurink, R. C., Denby, K., Pieterse, C. M. J. & Van Wees, S. CM., 1 Sep 2017

Article in The Plant Cell

Time-series transcriptomics reveals that AGAMOUS-LIKE22 affects primary metabolism and developmental processes in drought-stressed arabidopsis

Bechtold, U., Penfold, C. A., Jenkins, D. J., Legaie, R., Moore, J. D., Lawson, T., Matthews, J. S. A., Vialet-Chabrand, S. R. M., Baxter, L., Subramaniam, S., Hickman, R., Florance, H., Sambles, C., Salmon, D. L., Feil, R., Bowden, L., Hill, C., Baker, N. R., Lunn, J. E., Finkenstädt, B. & 9 others, Mead, A., Buchanan-Wollaston, V., Beynon, J., Rand, D. A., Wild, D. L., Denby, K. J., Ott, S., Smirnoff, N. & Mullineaux, P. M., 3 Feb 2016

Article in The Plant Cell

Transcriptional dynamics driving MAMP-triggered immunity and pathogen effector-mediated immunosuppression in Arabidopsis leaves following infection with Pseudomonas syringae pv tomato DC3000

Lewis, L. A., Polanski, K., de Torres-Zabala, M., Jayaraman, S., Bowden, L., Moore, J., Penfold, C. A., Jenkins, D. J., Hill, C., Baxter, L., Kulasekaran, S., Truman, W., Littlejohn, G., Prusinska, J., Mead, A., Steinbrenner, J., Hickman, R., Rand, D., Wild, D. L., Ott, S. & 5 others, Buchanan-Wollaston, V., Smirnoff, N., Beynon, J., Denby, K. & Grant, M., 13 Nov 2015

Article in The Plant Cell

Reassess the t test: Interact with all your data via ANOVA

Brady, S. M., Burow, M., Busch, W., Carlborg, Õ., Denby, K. J., Glazebrook, J., Hamilton, E. S., Harmer, S. L., Haswell, E. S., Maloof, J. N., Springer, N. M. & Kliebenstein, D. J., 1 Aug 2015

Article in The Plant Cell

Production of bioactive diterpenoids in the Euphorbiaceae depends on evolutionarily conserved gene clusters

King, A. J., Brown, G. D., Gilday, A. D., Larson, T. R. & Graham, I. A., Aug 2014

Article in The Plant Cell

A H+-ATPase That Energizes Nutrient Uptake during Mycorrhizal Symbioses in Rice and Medicago truncatula

Wang, E., Yu, N., Bano, S. A., Liu, C., Miller, A. J., Cousins, D., Zhang, X., Ratet, P., Tadege, M., Mysore, K. S., Downie, J. A., Murray, J. D., Oldroyd, G. E. D. & Schultze, M., 29 Apr 2014

Article in The Plant Cell

Alternative acetate production pathways in chlamydomonas reinhardtii during dark anoxia and the dominant role of chloroplasts in fermentative acetate production

Yang, W., Catalanotti, C., D’adamo, S., Wittkopp, T. M., Ingram-Smith, C. J., Mackinder, L., Miller, T. E., Heuberger, A. L., Peers, G., Smith, K. S., Jonikas, M. C., Grossman, A. R. & Posewitz, M. C., 2014

Article in The Plant Cell

Arabidopsis Sec1/Munc18 protein SEC11 is a competitive and dynamic modulator of SNARE binding and SYP121-dependent vesicle traffic

Karnik, R., Grefen, C., Bayne, R., Honsbein, A., Köhler, T., Kioumourtzoglou, D., Williams, M., Bryant, N. J. & Blatt, M. R., Apr 2013

Article in The Plant Cell

Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants

Baxter, L., Jironkin, A., Hickman, R., Moore, J., Barrington, C., Krusche, P., Dyer, N. P., Buchanan-Wollaston, V., Tiskin, A., Beynon, J., Denby, K. & Ott, S., Oct 2012

Article in The Plant Cell

Arabidopsis defense against Botrytis cinerea: Chronology and regulation deciphered by high-resolution temporal transcriptomic analysis

Windram, O., Madhou, P., Mchattie, S., Hill, C., Hickman, R., Cooke, E., Jenkins, D. J., Penfold, C. A., Baxter, L., Breeze, E., Kiddle, S. J., Rhodes, J., Atwell, S., Kliebenstein, D. J., Kim, Y. S., Stegle, O., Borgwardt, K., Zhang, C., Tabrett, A., Legaie, R. & 9 others, Moore, J., Finkenstadt, B., Wild, D. L., Mead, A., Rand, D., Beynon, J., Ott, S., Buchanan-Wollaston, V. & Denby, K. J., Sep 2012

Article in The Plant Cell

TIME FOR COFFEE represses accumulation of the MYC2 transcription factor to provide time-of-day regulation of jasmonate signaling in Arabidopsis

Shin, J., Heidrich, K., Sanchez-Villarreal, A., Parker, J. E. & Davis, S. J., Jun 2012

Article in The Plant Cell

EARLY FLOWERING4 recruitment of EARLY FLOWERING3 in the nucleus sustains the Arabidopsis circadian clock

Herrero, E., Kolmos, E., Bujdoso, N., Yuan, Y., Wang, M., Berns, M. C., Uhlworm, H., Coupland, G., Saini, R., Jaskolski, M., Webb, A. & Davis, S. J., Feb 2012

Article in The Plant Cell

Vacuolar Nicotianamine Has Critical and Distinct Roles under Iron Deficiency and for Zinc Sequestration in Arabidopsis

Haydon, M. J., Kawachi, M., Wirtz, M., Hillmer, S., Hell, R. & Kraemer, U., Feb 2012

Article in The Plant Cell

Plasma Membrane Cyclic Nucleotide Gated Calcium Channels Control Land Plant Thermal Sensing and Acquired Thermotolerance.

Finka, A., Quended, A., Maathuis, F., Saidi, Y. & Goloubinoff, P., 2012

Article in The Plant Cell

A reduced-function allele reveals that EARLY FLOWERING3 repressive action on the circadian clock is modulated by phytochrome signals in Arabidopsis

Kolmos, E., Herrero, E., Bujdoso, N., Millar, A. J., Tóth, R., Gyula, P., Nagy, F. & Davis, S. J., Sep 2011

Article in The Plant Cell

Induction of dormancy in Arabidopsis summer annuals requires parallel regulation of DOG1 and hormone metabolism by low temperature and CBF transcription factors

Kendall, S., Hellwege, A., Marriott, P., Whalley, P., Graham, I. A. & Penfield, S., Jul 2011

Article in The Plant Cell

A DELLA in Disguise: SPATULA Restrains the Growth of the Developing Arabidopsis Seedling

Josse, E-M., Gan, Y., Bou-Torrent, J., Stewart, K. L., Gilday, A. D., Jeffree, C. E., Vaistij, F. E., Martinez-Garcia, J. F., Nagy, F., Graham, I. A. & Halliday, K. J., Apr 2011

Article in The Plant Cell

High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation

Breeze, E., Harrison, E., McHattie, S., Hughes, L., Hickman, R., Hill, C., Kiddle, S., Kim, Y. S., Penfold, C. A., Jenkins, D., Zhang, C., Morris, K., Jenner, C., Jackson, S., Thomas, B., Tabrett, A., Legaie, R., Moore, J. D., Wild, D. L., Ott, S. & 5 others, Rand, D., Beynon, J., Denby, K., Mead, A. & Buchanan-Wollaston, V., Mar 2011

Article in The Plant Cell

12-Oxo-Phytodienoic Acid Accumulation during Seed Development Represses Seed Germination in Arabidopsis

Dave, A., Hernandez, M. L., He, Z., Andriotis, V. M. E., Vaistij, F. E., Larson, T. R. & Graham, I. A., Feb 2011

Article in The Plant Cell

Rice Two-Pore K+ channels are expressed in different types of vacuole.

Isayenkov, S. V., Isner, J-C. & Maathuis, F., Feb 2011

Article in The Plant Cell

Identification of the 2-Hydroxyglutarate and Isovaleryl-CoA Dehydrogenases as Alternative Electron Donors Linking Lysine Catabolism to the Electron Transport Chain of Arabidopsis Mitochondria

Araujo, W. L., Ishizaki, K., Nunes-Nesi, A., Larson, T. R., Tohge, T., Krahnert, I., Witt, S., Obata, T., Schauer, N., Graham, I. A., Leaver, C. J. & Fernie, A. R., May 2010

Article in The Plant Cell

The Heat Shock Response in Moss Plants Is Regulated by Specific Calcium-Permeable Channels in the Plasma Membrane

Saidi, Y., Finka, A., Muriset, M., Bromberg, Z., Weiss, Y. G., Maathuis, F. J. M. & Goloubinoff, P., Sep 2009

Article in The Plant Cell