A. Jamie Wood

Search results

• 2022

  Integration of Aspergillus niger transcriptomic profile with metabolic model identifies potential targets to optimise citric acid production from lignocellulosic hydrolysate

  Upton, D. J., Kaushal, M., Whitehead, C., Faas, L., Gomez, L. D., McQueen-Mason, S. J., Srivastava, S. & Wood, A. J., 12 Jan 2022, In: Biotechnology for biofuels and bioproducts. 15, 4.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Inter-species interactions alter antibiotic efficacy in bacterial communities

  Bottery, M., Matthews, J. L., Wood, A. J., Johansen, H. K., Pitchford, J. & Friman, V-P., Mar 2022, In: The ISME Journal. 2022, 16, p. 812-821

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• The effects of antibiotic combination treatments on Pseudomonas aeruginosa tolerance evolution and coexistence with Stenotrophomonas maltophilia

  Law, J., Wood, A. J. & Friman, V-P., 9 Nov 2022, (Accepted/In press) In: Microbiology spectrum.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
• 2021

  Computational Modeling of Glycan Processing in the Golgi for Investigating Changes in the Arrangements of Biosynthetic Enzymes

  West, B., Wood, A. J. & Ungar, D., 6 Oct 2021, In: Methods in Molecular Biology. 2370, p. 209-222 14 p.

  Research output: Contribution to journal › Article › peer-review

• Plasmid fitness costs are caused by specific genetic conflicts enabling resolution by compensatory mutation

  Hall, J. P. J., Wright, R., Harrison, E., Muddiman, K. J., Wood, A. J., Paterson, S. & Brockhurst, M., 13 Oct 2021, In: PLoS Biol.. 19, 10, 31 p., e3001225.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Rapid compensatory evolution can rescue low fitness symbioses following partner-switching

  Sørensen, M. E. S., Wood, A. J., Cameron, D. D. & Brockhurst, M., 12 Jul 2021, (E-pub ahead of print) In: Current Biology. p. 1-13 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Stochastic gel-shatter cycles in coalescence-fragmentation models

  Fagan, B., MacKay, N., Pushkin, M. & Wood, A. J., 10 May 2021, In: EPL. 133, 6 p., 53001.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
• 2020

  Bootstrapping the Battle of Britain

  Fagan, B. T., Horwood, I., MacKay, N. J., Price, C., Richards, E. & Wood, A. J., Jan 2020, In: The Journal of Military History. 84, 1, p. 151-186

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Change point analysis of historical battle deaths

  Fagan, B., Knight, M. I., MacKay, N. & Wood, A. J., 10 Jun 2020, (E-pub ahead of print) In: Journal of the Royal Statistical Society: Series A (Statistics in Society).

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Comparison of independent evolutionary origins reveals both convergence and divergence in the metabolic mechanisms of symbiosis

  Sorenson, M. E. S., Wood, A. J., Minter, E. J. A., Lowe, C. D., Cameron, D. D. & Brockhurst, M. A., 20 Jan 2020, In: Current Biology. 30, 2, p. 328-334.E4 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• In silico evolution of Aspergillus niger organic acid production suggests strategies for switching acid output

  Upton, D., McQueen Mason, S. J. & Wood, A. J., 24 Feb 2020, In: Biotechnology for biofuels. 13, 21 p., 27.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Simulating the evolutionary trajectories of metabolic pathways for insect symbionts in the genus Sodalis

  Hall, R. J., Thorpe, S., Thomas, G. H. & Wood, A. J., 16 Jun 2020, In: Microbial Genomics. 6, 7

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Simulating the evolutionary trajectories of metabolic pathways for insect symbionts in the Sodalis genus

  Hall, R. J., Thorpe, S., Thomas, G. H. & Wood, A. J., 27 Apr 2020, (Accepted/In press) In: Microbial Genomics.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
• 2019

  A Tale of Three Species: Adaptation of Sodalis glossinidius to tsetse biology, Wigglesworthia metabolism and host diet

  Hall, R. J., Flanagan, L. A., Bottery, M. J., Springthorpe, V. J., Thorpe, S., Darby, A. C., Wood, A. J. & Thomas, G. H., 1 Jan 2019, In: MBio. 10, 1, 15 p., e02106-18.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Fine-scale behavioural adjustments of prey on a continuum of risk

  Kent, M. I. A., Herbert-Read, J. E., McDonald, G., Wood, A. J. & Ward, A. J. W., 22 May 2019, In: Proceedings of the Royal Society B: Biological Sciences. 286, 1903, p. 1-8

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Modeling Glycan Processing Reveals Golgi-Enzyme Homeostasis upon Trafficking Defects and Cellular Differentiation

  Fisher, P., Spencer, H., Thomas-Oates, J., Wood, A. J. & Ungar, D., 23 Apr 2019, In: Cell reports. 27, 4, p. 1231-1243 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Quorum machinery: Effect of the las system in rhl regulation of P. aeruginosa

  Alfiniyah, C., Bees, M. A. & Wood, A. J., 19 Dec 2019, Proceedings of the 8th SEAMS-UGM International Conference on Mathematics and Its Applications 2019: Deepening Mathematical Concepts for Wider Application through Multidisciplinary Research and Industries Collaborations. Utami, H., Kusumo, F. A., Susyanto, N. & Susanti, Y. (eds.). American Institute of Physics, p. 1-12 12 p. 060001. (AIP Conference Proceedings; vol. 2192).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  File

• Spatial organisation of expanding bacterial colonies is affected by contact-dependent growth inhibition

  Bottery, M. J., Passaris, I., Dytham, C., Wood, A. J. & Van Der Woude, M., 4 Nov 2019, In: Current Biology. 29, e1-e5, p. 3622-3634 19 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Temporal dynamics of bacteria-plasmid coevolution under antibiotic selection

  Bottery, M. J., Wood, A. J. & Brockhurst, M. A., 1 Feb 2019, In: The ISME Journal. 13, 2, p. 559-562 4 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• The N-glycosylation processing potential of the mammalian Golgi apparatus

  Fisher, P., Thomas-Oates, J. E., Wood, A. J. & Ungar, D., 13 Aug 2019, In: Frontiers in cell and developmental biology.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• The role of exploitation in the establishment of mutualistic microbial symbioses

  Sorenson, M. E. S., Lowe, C. D., Minter, E. J. A., Wood, A. J., Cameron, D. D. & Brockhurst, M. A., 4 Jul 2019, In: FEMS microbiology letters. 366, 12, 16 p., fnz148.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
• 2018

  Variation and asymmetry in host-symbiont dependence in a microbial symbiosis

  Minter, E. J. A., Lowe, C. D., Cameron, D. D., Wood, A. J., Brockhurst, M. A. & Sørensen, M. E. S., 9 Jul 2018, In: Bmc evolutionary biology. 18, 108, p. 1-8 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
• 2017

  Adaptive modulation of antibiotic resistance through intragenomic coevolution

  Bottery, M. J., Wood, A. J. & Brockhurst, M. A., 1 Sep 2017, In: Nature Ecology and Evolution. 1, 9, p. 1364-1369 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• An accurate description of Aspergillus niger organic acid batch fermentation through dynamic metabolic modelling

  Upton, D. J., McQueen Mason, S. J. & Wood, A. J., 9 Nov 2017, In: Biotechnology for biofuels. 10, 14 p., 258.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Dogger Bank: Weighing the Fog of War

  MacKay, N. J., Price, C. & Wood, A. J., 9 Jun 2017, (E-pub ahead of print) In: Significance. 14, 3, p. 14-19 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Gene mobility promotes the spread of resistance in bacterial populations

  Stevenson, C., Hall, J. P., Harrison, E., Wood, A. J. & Brockhurst, M. A., 31 Mar 2017, In: The ISME Journal. 11, 8, p. 1930-1932 3 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Pulse generation in the quorum machinery of Pseudomonas aeruginosa

  Alfiniyah, C. A., Bees, M. A. & Wood, A. J., Jun 2017, In: Bulletin of Mathematical Biology. 79, p. 1360-1389 30 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
• 2016

  Host control and nutrient trading in a photosynthetic symbiosis

  Dean, A. D., Minter, E. J. A., Sørensen, M. E. S., Lowe, C. D., Cameron, D. D., Brockhurst, M. A. & Wood, A. J., 27 Feb 2016, (E-pub ahead of print) In: Journal of theoretical biology. p. 1-12 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Metabolic constraints for a novel symbiosis

  Wood, A. J., Sørensen, M., Brockhurst, M. & Cameron, D. D., 23 Mar 2016, In: Royal Society Open Science. 3, p. 1-9 9 p., 150708.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Selective conditions for a multidrug resistance plasmid depend on the sociality of antibiotic resistance"

  Bottery, M., Wood, A. J. & Brockhurst, M., 1 Apr 2016, In: Antimicrobial agents and chemotherapy. 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Source-sink plasmid transfer dynamics maintain gene mobility in soil bacterial communities

  Hall, J. P. J., Wood, A. J., Harrison, E. & Brockhurst, M. A., 19 Jul 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 29, p. 8260-8265 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Weighing the Fog of War: Illustrating the power of Bayesian methods for historical analysis through the battle of the Dogger Bank

  MacKay, N., Price, C. & Wood, A. J., 2 Apr 2016, In: Historical Methods: A journal of quantitative and interdisciplinary history. 49, 2, p. 80-91 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Weight of Shell Must Tell: A Lanchestrian reappraisal of the Battle of Jutland

  MacKay, N. J., Price, C. & Wood, A. J., 25 Sep 2016, In: History. 101, 347, p. 536-563 28 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
• 2015

  Bacteriophages limit the existence conditions for conjugative plasmids

  Harrison, E., Wood, A. J., Dytham, C., Pitchford, J. W., Truman, J., Spiers, A., Paterson, S. & Brockhurst, M. A., 2 Jun 2015, In: MBio. 6, 3, e00586-15.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Obstacle avoidance in social groups: new insights from asynchronous models

  Croft, S., Budgey, R., Pitchford, J. & Wood, A. J., Apr 2015, In: Interface. 12, 106

  Research output: Contribution to journal › Article › peer-review

  File
• 2012

  Distinguishing Social from Nonsocial Navigation in Moving Animal Groups

  Bode, N. W. F., Franks, D. W., Wood, A. J., Piercy, J. J. B., Croft, D. P. & Codling, E. A., May 2012, In: American Naturalist. 179, 5, p. 621-632 12 p.

  Research output: Contribution to journal › Article › peer-review

• Leading from the front? Social networks in navigating groups

  Bode, N. W. F., Franks, D. W. & Wood, A. J., Jun 2012, In: Behavioral Ecology and Sociobiology. 66, 6, p. 835-843 9 p.

  Research output: Contribution to journal › Article › peer-review

• Social networks improve leaderless group navigation by facilitating long-distance communication

  Bode, N. W. F., Wood, A. J. & Franks, D. W., 2012, In: Current zoology. 58, 2, p. 329-341 13 p.

  Research output: Contribution to journal › Article › peer-review

• The influence of group size and social interactions on collision risk with obstacles.

  Croft, S., Budgey, R., Pitchford, J. & Wood, A. J., 2012, (Accepted/In press) In: Ecological Complexity.

  Research output: Contribution to journal › Article › peer-review

• 2011

  Limited interactions in flocks: relating model simulations to empirical data

  Bode, N. W. F., Franks, D. W. & Wood, A. J., 6 Feb 2011, In: Interface. 8, 55, p. 301-304 4 p.

  Research output: Contribution to journal › Article › peer-review

• Social networks and models for collective motion in animals

  Bode, N. W. F., Wood, A. J. & Franks, D. W., Feb 2011, In: Behavioral Ecology and Sociobiology. 65, 2, p. 117-130 14 p.

  Research output: Contribution to journal › Article › peer-review

• The impact of social networks on animal collective motion

  Bode, N. W. F., Wood, A. J. & Franks, D. W., 1 Jul 2011, In: ANIMAL BEHAVIOUR. 82, 1, p. 29 - 38 9 p.

  Research output: Contribution to journal › Article › peer-review
• 2010

  Binding to DNA Protects Neisseria meningitidis Fumarate and Nitrate Reductase Regulator (FNR) from Oxygen

  Edwards, J., Cole, L. J., Green, J. B., Thomson, M. J., Wood, A. J., Whittingham, J. L. & Moir, J. W. B., 8 Jan 2010, In: Journal of Biological Chemistry. 285, 2, p. 1105-1112 8 p., 057810.

  Research output: Contribution to journal › Article › peer-review

• Emergent patterns in space and time from daisyworld: a simple evolving coupled biosphere-climate model

  Ackland, G. J. & Wood, A. J., 13 Jan 2010, In: Philosophical Transactions of the Royal Society of London. Series A, Mathematical and Physical Sciences. 368, 1910, p. 161-179 19 p.

  Research output: Contribution to journal › Article › peer-review

• Evolutionary optimality in stochastic search problems

  Preston, M. D., Pitchford, J. W. & Wood, A. J., 6 Sep 2010, In: Interface. 7, 50, p. 1301-1310 10 p.

  Research output: Contribution to journal › Article › peer-review

• Exact Results for the Evolution of Stochastic Switching in Variable Asymmetric Environments

  Gaál, B., Pitchford, J. W. & Wood, A. J., Apr 2010, In: Genetics. 184, 4, p. 1113-1119 7 p.

  Research output: Contribution to journal › Article › peer-review

• How perceived threat increases synchronization in collectively moving animal groups

  Bode, N. W. F., Faria, J. J., Franks, D. W., Krause, J. & Wood, A. J., 22 Oct 2010, In: Proceedings of the Royal Society B: Biological Sciences. 277, 1697, p. 3065-3070 6 p.

  Research output: Contribution to journal › Article › peer-review

• Making noise: Emergent stochasticity in collective motion

  Bode, N. W. F., Franks, D. W. & Wood, A. J., 7 Dec 2010, In: Journal of Theoretical Biology. 267, 3, p. 292-299 8 p.

  Research output: Contribution to journal › Article › peer-review

• Strategy selection under predation; evolutionary analysis of the emergence of cohesive aggregations

  Wood, A. J., 21 Jun 2010, In: Journal of theoretical biology. 264, 4, p. 1102-1110 9 p.

  Research output: Contribution to journal › Article › peer-review
• 2009

  A totally asymmetric exclusion process with stochastically mediated entrance and exit

  Wood, A. J., 6 Nov 2009, In: Journal of Physics A: Mathematical and Theoretical. 42, 44, p. 1-10 10 p., 445002.

  Research output: Contribution to journal › Article › peer-review