Andrew Stephen Mason

Search results

• 2024

  Exploration of the single-cell transcriptomic landscape identifies aberrant glomerular cell crosstalk in a murine model of WT1 kidney disease

  Mason, A. S., 2 Sept 2024, In: Journal of Pathology. 264, 2, p. 212-227

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
• 2023

  A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants

  Mason, A. S., 22 Nov 2023, In: BMC Biology. 21, 17 p., 267.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Fourth Report on Chicken Genes and Chromosomes 2022

  Mason, A. S., 30 Jan 2023, (E-pub ahead of print) In: Cytogenetic and Genome Research. 123 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
• 2022

  Induction of APOBEC3-mediated genomic damage in urothelium implicates BK polyomavirus (BKPyV) as a hit-and-run driver for bladder cancer

  Baker, S. C., Mason, A. S., Slip, R., Skinner, K., Macdonald, A., Masood, O., Harris, R. S., Fenton, T. R., Periyasamy, M., Ali, S. & Southgate, J., 22 Feb 2022, In: Oncogene. 41, p. 2139-2151 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• LPCAT4 knockdown alters barrier integrity and cellular bioenergetics in human urothelium

  Mason, A. S., Varley, C. L., Foody, O. M., Li, X., Skinner, K., Walker, D., Larson, T. R., Wakamatsu, D., Baker, S. C. & Southgate, J., 6 Oct 2022, In: International Journal of Molecular Sciences. 23, 19, 19 p., 11871.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• The urothelial transcriptomic response to interferon gamma: implications for bladder cancer prognosis and immunotherapy

  Baker, S. C., Mason, A. S., Slip, R., Eriksson, P., Sjodahl, G., Trejdosiewicz, L. & Southgate, J., 27 Oct 2022, In: Cancers. 14, 21, 12 p., 5295.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
• 2021

  Does a novel mutagenic process target KMT2D mutation in the most common first event on the path to bladder cancer

  Baker, S. C., Mason, A. S. & Southgate, J., 1 Mar 2021, In: European Urology. 79, 3, p. 435-436 2 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Falling fowl of the chicken reference genome: pitfalls of studying polymorphic endogenous retroviruses

  Mason, A. S., 20 Apr 2021, (E-pub ahead of print) In: Retrovirology. 18, 1, p. 1-3 3 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• The impact of Endogenous Avian Leukosis Viruses (ALVE) on production traits in elite layer lines

  Fulton, J. E., Mason, A. S., Wolc, A., Arango, J., Settar, P., Lund, A. R. & Burt, D. W., 1 Jun 2021, In: Poultry Science. 100, 6, 8 p., 101121.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
• 2020

  Diversity of endogenous Avian Leukosis Virus subgroup E (ALVE) insertions in indigenous chickens

  Mason, A. S., Miedzinska, K., Kebede, A., Bamidele, O., Al-Jumaili, A. S., Dessie, T., Hanotte, O. & Smith, J., 1 Jun 2020, (E-pub ahead of print) In: Genetics Selection Evolution. 52, 29, p. 1-7 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Endogenous Avian Leukosis Virus subgroup E elements of the chicken reference genome

  Mason, A. S., Fulton, J. & Smith, J., 2 Apr 2020, (E-pub ahead of print) In: Poultry Science. 99, 6, p. 2911-2915 5 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Identification and characterisation of endogenous Avian Leukosis Virus subgroup E (ALVE) insertions in chicken whole genome sequencing data

  Mason, A. S., Lund, A. R., Hocking, P. M., Fulton, J. E. & Burt, D. W., 30 Jun 2020, In: Mobile DNA. 11, 13 p., 22.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Pro-carcinogen activation and mutational signatures model the initiation of carcinogenesis in human urothelial tissues in vitro

  Baker, S. C., Mason, A. S. & Southgate, J., Aug 2020, In: European Urology. 78, 2, p. 143-147 5 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• The clonal relation of primary upper urinary tract urothelial carcinoma and paired urothelial carcinoma of the bladder

  van Doeveren, T., Nakauma-Gonzalez, J. A., Mason, A. S., van Leenders, G. J. L. H., Zuiverloon, T. C. M., Zwarthoff, E. C., Meijssen, I. C., van der Made, A. C., van der Heijden, A. G., Hendricksen, K., van Rhijn, B. W. G., Voskuilen, C. S., van Riet, J., Dinjens, W. N. M., Dubbink, H. J., van de Werken, H. J. G. & Boormans, J. L., 13 Oct 2020, In: International Journal of Cancer. p. 1-7 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• The quail genome: insights into social behaviour, seasonal biology and infectious disease response

  Morris, K. M., Boitard, S., Hindle, M. M., Burt, D. W., Danner, A. F., Eory, L., Forrest, H. L., Gourichon, D., Gros, J., Hillier, L., Jaffredo, T., Khoury, H., Lansford, R., Leterrier, C., Loudon, A., Mason, A. S., Meddle, S. L., Minvielle, F., Minx, P. & Pitel, F. & 8 others, Seiler, J. P., Shimmura, T., Tomlinson, C., Vignal, A., Webster, R. G., Yoshimura, T., Warren, W. C. & Smith, J., 12 Feb 2020, In: BMC Biology. 18, 1, 18 p., 14 (2020).

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
• 2019

  Loss of Janus Associated Kinase1 alters urothelial cell functionand facilitates the development of bladder cancer

  Daza-Cajigal, V., Albuquerque, A., Pearson, J. F., Hinley, J. S., Mason, A. S., Stahlschmidt, J., Thrasher, A. J., Mishra, V., Southgate, J. & Burns, S. O., 10 Sept 2019, In: Frontiers in immunology.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Reviving rare chicken breeds using genetically engineered sterility in surrogate host birds

  Woodcock, M. E., Gheyas, A. A., Mason, A. S., Nandi, S., Taylor, L., Sherman, A., Smith, J., Burt, D. W., Hawken, R. & McGrew, M. J., 15 Oct 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 42, p. 20930-20937 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Specificity of the Metallothionein-1 Response by Cadmium-Exposed Human Urothelial Cells

  McNeill, R. V., Mason, A. S., Hodson, M. E., Catto, J. W. F. & Southgate, J., 17 Mar 2019, In: International Journal of Molecular Sciences.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
• 2017

  A New Chicken Genome Assembly Provides Insight into Avian Genome Structure

  Warren, W. C., Hillier, L. W., Tomlinson, C., Minx, P., Kremitzki, M., Graves, T., Markovic, C., Bouk, N., Pruitt, K. D., Thibaud-Nissen, F., Schneider, V., Mansour, T. A., Brown, C. T., Zimin, A., Hawken, R., Abrahamsen, M., Pyrkosz, A. B., Morisson, M., Fillon, V. & Vignal, A. & 12 others, Chow, W., Howe, K., Fulton, J. E., Miller, M. M., Lovell, P., Mello, C. V., Wirthlin, M., Mason, A. S., Kuo, R., Burt, D. W., Dodgson, J. B. & Cheng, H. H., 5 Jan 2017, In: G3: Genes, Genomes, Genetics. 7, 1, p. 109-117 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
• 2016

  A new look at the LTR retrotransposon content of the chicken genome

  Mason, A. S., Fulton, J. E., Hocking, P. M. & Burt, D. W., 30 Aug 2016, In: BMC Genomics. 17, 688 (2016).

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
• 2015

  Genome-wide analysis reveals the extent of EAV-HP integration in domestic chicken

  Wragg, D., Mason, A. S., Yu, L., Kuo, R., Lawal, R. A., Desta, T. T., Mwacharo, J. M., Cho, C.-Y., Kemp, S., Burt, D. W. & Hanotte, O., 14 Oct 2015, In: BMC Genomics. 16, 10 p., 784.

  Research output: Contribution to journal › Article › peer-review