Research output per year
Research output per year
- 23 results
Search results
-
2025
Stable and dynamic gene expression patterns over diurnal and developmental timescales in Arabidopsis thaliana
Redmond, E., Ronald, J., Davis, S. J. & Ezer, D., 20 Mar 2025, (E-pub ahead of print) In: New Phytologist. 16 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
The impact of light heterogeneity in controlled environment agriculture on biomass of microgreens
Ezer, D., Redmond, E., Claydon, W., Vong, G., Denby, K., Thomas, A., Sutton, P. & Rodrigues Galdino Kluczkovski, A. M., 23 Apr 2025, In: Quantitative Plant Biology.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
2024
AraLeTA: An Arabidopsis leaf expression atlas across diurnal and developmental scales
Ezer, D., Vong, G., Claydon, W., McCarthy, K., Redmond, E. & Davis, S. J., 9 Feb 2024, (Accepted/In press) In: Plant Physiology. kiae117.Research output: Contribution to journal › Article › peer-review
Open Access -
Functional regression clustering with multiple functional gene expressions
Ezer, D., Tavakoli, S. & Conde, S. M., 25 Nov 2024, In: PLoS ONE. 19, 11, 23 p., e0310991.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
Single-plant-omics reveals the cascade of transcriptional changes during the vegetative-to-reproductive transition
Ezer, D., Davis, S. J., Redmond, E. & Ronald, J., 2 Aug 2024, (Accepted/In press) In: The Plant Cell. koae226.Research output: Contribution to journal › Article › peer-review
Open Access -
Variation of terpene alkaloids in Daphniphyllum macropodum across plants and tissues
Eljounaidi, K., Radzikowska, B. A., Whitehead, C. B., Taylor, D. J., Conde, S., Davis, W., Dowle, A. A., Langer, S., James, S., Unsworth, W. P., Ezer, D., Larson, T. R. & Lichman, B. R., Jul 2024, In: The New phytologist. 243, 1, p. 299-313 15 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
2023
Complex epistatic interactions between ELF3, PRR9, and PRR7 regulates the circadian clock and plant physiology
Yuan, L., Avello Fernández, P., Zhu, Z., Lock, S., McCarthy, K., Redmond, E., Davis, A. M., Yang, S., Ezer, D., Pitchford, J., Quint, M., Xie, Q., Davis, S. J. & Ronald, J., 24 Dec 2023, (E-pub ahead of print) In: Genetics. 13 p., iyad217.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
2021
An early-morning gene network controlled by phytochromes and cryptochromes regulates photomorphogenesis pathways in Arabidopsis
Balcerowicz, M., Mahjoub, M., Nguyen, D., Lan, H., Stoeckle, D., Conde, S., Jaeger, K., Wigge, P. A. & Ezer, D., 7 Jun 2021, In: Molecular plant. 14, 6, p. 983-996 14 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
Reconstructing Genotypes in Private Genomic Databases from Genetic Risk Scores
Paige, B., Bell, J., Bellet, A., Gascon, A. & Ezer, D., 31 May 2021, In: Journal of Computational Biology. 28, 5, p. 435-451 17 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
What is quantitative plant biology?
Autran, D., Bassel, G. W., Chae, E., Ezer, D., Ferjani, A., Fleck, C., Hamant, O., Hartmann, F. P., Jiao, Y., Johnston, I. G., Kwiatkowska, D., Lim, B. L., Mahonen, A. P., Morris, R. J., Mulder, B. M., Nakayama, N., Sozzani, R., Strader, L. C., Tusscher, K. T. & Ueda, M. & 1 others, , 20 May 2021, In: Quantitative Plant Biology. 2, e10.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
2020
AI for social good: unlocking the opportunity for positive impact
Tomašev, N., Cornebise, J., Hutter, F., Mohamed, S., Picciariello, A., Ezer, D., Connelly, B., Belgrave, D. C. M., van der Haert, F. C., Mugisha, F., Abila, G., Arai, G., Arai, H., Almiraat, H., Proskurnia, J., Snyder, K., Otake-Matsuura, M., Othman, M., Glasmachers, T. & de Wever, W. & 5 others, , 18 May 2020, In: Nature Communications. 11, 6 p., 2468 (2020).Research output: Contribution to journal › Article › peer-review
Open AccessFile -
The Evening Complex establishes repressive chromatin domains via H2A.Z deposition
Tong, M., Lee, K., Ezer, D., Cortijo, S., Jung, J., Charoensawan, V., Box, M., Jaeger, K., Takahashi, N., Mas, P., Wigge, P. & Seo, P., 6 Jan 2020, In: Plant Physiology. 182, 1, p. 612-625Research output: Contribution to journal › Article › peer-review
Open AccessFile -
2019
A mass participatory experiment provides a rich temporal profile of temperature response in spring onions
Brestovitsky, A. & Ezer, D., 12 Mar 2019, In: Plant Direct. 3, 10, 11 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
NITPicker: selecting time points for follow-up experiments
Ezer, D. & Keir, J., 2 Apr 2019, In: BMC Bioinformatics. 20, 10 p., 166 (2019).Research output: Contribution to journal › Article › peer-review
Open AccessFile -
2018
Canonical and single-cell Hi-C reveal distinct chromatin interaction sub-networks of mammalian transcription factors
Ma, X., Ezer, D., Adryan, B. & Stevens, T. J., 25 Oct 2018, In: Genome biology. 19, 1, 23 p., 174 (2018).Research output: Contribution to journal › Article › peer-review
Open AccessFile -
2017
Plant Physiology: Out in the Midday Sun, Plants Keep Their Cool
Ezer, D. & Wigge, P. A., 9 Jan 2017, In: Current Biology. 27, 1, p. R28-R30Research output: Contribution to journal › Article › peer-review
Open Access -
The evening complex coordinates environmental and endogenous signals in Arabidopsis
Ezer, D., Jung, J.-H., Lan, H., Biswas, S., Gregoire, L., Box, M. S., Charoensawan, V., Cortijo, S., Lai, X., Stöckle, D., Zubieta, C., Jaeger, K. E. & Wigge, P. A., 26 Jun 2017, In: Nature Plants. 3, 7, 12 p., 17087 .Research output: Contribution to journal › Article › peer-review
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The G-box transcriptional regulatory code in Arabidopsis
Ezer, D., Shepherd, S. J., Brestovitsky, A., Dickinson, P., Cortijo, S., Charoensawan, V., Box, M. S., Biswas, S., Jaeger, K. E. & Wigge, P. A., 1 Oct 2017, In: Plant Physiology. 175, 2, 13 p.Research output: Contribution to journal › Article › peer-review
Open Access -
2016
Determining Physical Mechanisms of Gene Expression Regulation from Single Cell Gene Expression Data
Ezer, D., Moignard, V., Göttgens, B. & Adryan, B., 23 Aug 2016, In: PLoS Computational Biology. 12, 8, 28 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
Phytochromes function as thermosensors in Arabidopsis
Jung, J.-H., Domijan, M., Klose, C., Biswas, S., Ezer, D., Gao, M., Khattak, A. K., Box, M. S., Charoensawan, V., Cortijo, S., Kumar, M., Grant, A., Locke, J. C. W., Schäfer, E., Jaeger, K. E. & Wigge, P. A., 18 Nov 2016, In: Science. 354, 6314, p. 886-889 4 p.Research output: Contribution to journal › Article › peer-review
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2015
Reliable scaling of position weight matrices for binding strength comparisons between transcription factors
Ma, X., Ezer, D., Navarro, C. & Adryan, B., 20 Aug 2015, In: BMC Bioinformatics. 16, 265.Research output: Contribution to journal › Article › peer-review
Open Access -
2014
Homotypic clusters of transcription factor binding sites: a model system for understanding the physical mechanics of gene expression
Ezer, D., Zabet, N. R. & Adryan, B., 1 Jul 2014, In: Computational and Structural Biotechnology Journal. 10, 17, p. 63-69 7 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Physical constraints determine the logic of bacterial promoter architectures
Ezer, D., Zabet, N. R. & Adryan, B., 28 Jan 2014, In: Nucleic Acids Research. 42, 7, p. 4196-4207Research output: Contribution to journal › Article › peer-review