Ian Bancroft

Search results

• 2024

  Creation of rapeseed germplasm with high polyunsaturated fatty acid content by relative introgression of Brassica carinata

  Niu, Y., Li, W., Yang, Y., Wang, H., He, Z., Qin, H., Zhang, Y., Hu, D., Wang, J., Zhang, C., Yang, G., Bancroft, I. & Zou, J., 14 Nov 2024, (Accepted/In press) In: Plant Communications.

  Research output: Contribution to journal › Article › peer-review

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• 2021

  Genome structural evolution in Brassica crops

  He, Z., Ji, R., Havlickova, L., Wang, L., Li, Y., Lee, H. T., Song, J., Koh, C., Yang, J., Zhang, M., Parkin, I. A. P., Wang, X., Edwards, D., King, G. J., Zou, J., Liu, K., Snowdon, R. J., Banga, S. S., Machackova, I. & Bancroft, I., Jun 2021, In: Nature Plants. 7, 6, p. 757-765

  Research output: Contribution to journal › Article › peer-review

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• Genomic signatures of vegetable and oilseed allopolyploid Brassica juncea and genetic loci controlling the accumulation of glucosinolates

  Bancroft, I. & He, Z., 1 Dec 2021, In: Plant biotechnology journal. 19, 12, p. 2619-2628 10 p.

  Research output: Contribution to journal › Article › peer-review

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• Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids

  Bayer, P. E., Scheben, A., Golicz, A. A., Yuan, Y., Faure, S., Lee, H., Chawla, H. S., Anderson, R., Bancroft, I., Raman, H., Lim, Y. P., Robbens, S., Jiang, L., Liu, S., Barker, M. S., Schranz, M. E., Wang, X., King, G. J., Pires, J. C. & Chalhoub, B. & 3 others, Snowdon, R. J., Batley, J. & Edwards, D., 30 Nov 2021, In: Plant biology. 19, 12, p. 2488-2500 23 p.

  Research output: Contribution to journal › Article › peer-review

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• Validation of a novel associative transcriptomics pipeline in Brassica oleracea: Identifying candidates for vernalisation response

  Woodhouse, S., He, Z., Woolfenden, H., Steuernagel, B., Haerty, W., Bancroft, I., Irwin, J. A., Morris, R. J. & Wells, R., 13 Jul 2021, In: BMC Genomics. 22, 13 p., 539.

  Research output: Contribution to journal › Article › peer-review

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• 2020

  A Brassica napus Reductase Gene Dissected by Associative Transcriptomics Enhances Plant Adaption to Freezing Stress

  Huang, Y., Hussain, M. A., Luo, D., Xu, H., Zeng, C., Havlickova, L., Bancroft, I., Tian, Z., Zhang, X., Cheng, Y., Zou, X., Lu, G. & Lv, Y., 26 Jun 2020, In: Frontiers in Plant Science. 11, 15 p., 971.

  Research output: Contribution to journal › Article › peer-review

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• A high-contiguity Brassica nigra genome localizes active centromeres and defines the ancestral Brassica genome

  Sampath, P., Koh, C. S., Jin, L., Buchwaldt, M., Higgins, E. E., Zheng, C., Sankoff, D., Robinson, S. J., Kagale, S., Navabi, Z.-K., Tang, L., Horner, K. N., He, Z., Bancroft, I., Chalhoub, B., Sharpe, A. G. & Parkin, I. A. P., 10 Aug 2020, In: Nature Plants. 6, p. 929–941 13 p.

  Research output: Contribution to journal › Article › peer-review

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• QTL-seq identifies BnaFT.A02 and BnaFLC.A02 candidates for variation in vernalisation requirement and response in winter oilseed rape (Brassica napus)

  Tudor, E. H., Jones, D. M., He, Z., Bancroft, I., Trick, M., Wells, R., Irwin, J. A. & Dean, C., 23 Jun 2020, (E-pub ahead of print) In: Plant biotechnology journal. 16 p.

  Research output: Contribution to journal › Article › peer-review

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• The WRKY6 transcription factor affects seed oil accumulation and alters fatty acid compositions in Arabidopsis thaliana

  Song, G., Li, X., Munir, R., Khan, A. R., Azhar, W., Yasin, M. U., Jiang, Q., Bancroft, I. & Gan, Y., 14 Mar 2020, (E-pub ahead of print) In: Physiologia plantarum. 13 p.

  Research output: Contribution to journal › Article › peer-review

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• Validation of an Associative Transcriptomics platform in the polyploid crop species Brassica juncea by dissection of the genetic architecture of agronomic and quality traits

  Harper, A. L., He, Z., Langer, S., Havlickova, L., Wang, L., Fellgett, A., Gupta, V., Pradhan, A. K. & Bancroft, I., 22 Jul 2020, (E-pub ahead of print) In: The Plant journal. p. 1-9 9 p.

  Research output: Contribution to journal › Article › peer-review

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• 2019

  Analysing the genetic architecture of clubroot resistance variation in Brassica napus by associative transcriptomics

  Hejna, O., Havlickova, L., He, Z., Bancroft, I. & Curn, V., 1 Aug 2019, In: Molecular Breeding. 39, 112, 13 p., 112.

  Research output: Contribution to journal › Article › peer-review

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• Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole-genome duplications in Brassica

  Ferreira de Carvalho, J., Lucas, J., Deniot, G., Falentin, C., Filangi, O., Gilet, M., Legeal, F., Lode, M., Morice, J., Trotoux, G., Aury, J.-M., Barbe, V., Keller, J., Snowdon, R., He, Z., Denoeud, F., Wincker, P., Bancroft, I., Chevre, A.-M. & Rosseau-Gueutin, M., 1 May 2019, In: The Plant journal. 98, 3, p. 434-447 14 p.

  Research output: Contribution to journal › Article › peer-review

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• Data in support of genetic architecture of glucosinolate variations in Brassica napus

  Kittipol, V., He, Z., Wang, L., Doheny-Adams, T., Langer, S. & Bancroft, I., Aug 2019, In: Data in Brief. 25, 7 p., 104402.

  Research output: Contribution to journal › Article › peer-review

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• Genetic architecture of glucosinolate variation in Brassica napus

  Kittipol, V., He, Z., Wang, L., Doheny-Adams, T., Langer, S. & Bancroft, I., Sept 2019, In: Journal of Plant Physiology. 8 p., 152988.

  Research output: Contribution to journal › Article › peer-review

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• Genome-wide selection footprints and deleterious variations in young Asian allotetraploid rapeseed

  Zou, J., Mao, L., Qiu, J., Wang, M., Jia, L., Wu, D., He, Z., Chen, M., Shen, Y., Shen, E., Huang, Y., Li, R., Hu, D., Shi, L., Wang, K., Zhu, Q.-H., Ye, C., Bancroft, I., King, G. J. & Meng, J. & 1 others, Fan, L., 1 Oct 2019, In: Plant biotechnology journal. 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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• The impact of reducing fatty acid desaturation on the composition and thermal stability of rapeseed oil

  Kaur, H., Wang, L., Stawniak, N., Sloan, R., van Erp, H., Eastmond, P. & Bancroft, I., 14 Oct 2019, In: Plant biotechnology journal. 9 p.

  Research output: Contribution to journal › Article › peer-review

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• 2018

  Dissecting the complex regulation of lodging resistance in Brassica napus

  Miller, C. N., Harper, A. L., Trick, M., Wellner, K., Peter, W., Waldron, K. & Bancroft, I., 1 Mar 2018, In: Molecular Breeding. 30, 3, 18 p., 30.

  Research output: Contribution to journal › Article › peer-review

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• Species-wide variation in shoot nitrate concentration, and genetic loci controlling nitrate, phosphorus and potassium accumulation in Brassica napus L

  Alcock, T. D., Havlickova, L., He, Z., Wilson, L., Bancroft, I., White, P. J., Broadley, M. R. & Graham, N. S., 16 Oct 2018, In: Frontiers in Plant Science. 17 p.

  Research output: Contribution to journal › Article › peer-review

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• Validation of an updated Associative Transcriptomics platform for the polyploid crop species Brassica napus by dissection of the genetic architecture of erucic acid and tocopherol isoform variation in seeds

  Havlickova, L., He, Z., Wang, L., Langer, S., Harper, A. L., Kaur, H., Broadley , M. R., Gegas, V. & Bancroft, I., 1 Jan 2018, In: The Plant journal.

  Research output: Contribution to journal › Article › peer-review

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• 2017

  Assembly and comparison of two closely related Brassica napus genomes

  Bayer, P. E., Hurgobin, B., Golicz, A. A., Chan, C.-K. K., Yuan, Y., Lee, H., Renton, M., Meng, J., Li, R., Long, Y., Zou, J., Bancroft, I., Chalhoub, B., King, G. J., Batley, J. & Edwards, D., 21 Nov 2017, In: Plant biotechnology journal. 15, 12, p. 1602-1610 9 p.

  Research output: Contribution to journal › Article › peer-review

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• Carbohydrate microarrays and their use for the identification of molecular markers for plant cell wall composition

  Wood, I. P., Pearson, B. M., Garcia-Gutierrez, E., Havlickova, L., He, Z., Harper, A. L., Bancroft, I. & Waldron, K. W., 27 Jun 2017, In: Proceedings of the National Academy of Sciences of the United States of America. 114, 26, p. 6860-6865 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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• Development of an efficient glucosinolate extraction method

  Doheny-Adams, T., Redeker, K. R., Kittipol, V., Bancroft, I. & Hartley, S. E., 21 Mar 2017, In: Plant Methods . 13, 14 p., 17.

  Research output: Contribution to journal › Article › peer-review

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• Extensive homoeologous genome exchanges in allopolyploid crops revealed by mRNAseq-based visualization

  He, Z., Wang, L., Harper, A. L., Havlickova, L., Pradhan, A., Parkin, I. & Bancroft, I., 1 May 2017, In: Plant biotechnology journal. 15, 5, p. 594-604 11 p.

  Research output: Contribution to journal › Article › peer-review

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• Genome sequence and genetic diversity of European ash trees

  Sollars, E., Harper, A. L., Kelly, L., Sambles, C., Ramirez-Gonzalez, R., Swarbreck, D., Kaithakottil, G., Cooper, E., Uauy, C., Havlickova, L., Worswick, G., Studholme, D., Zohren, J., Salmon, D., Clavijo, B., Li, Y., He, Z., Fellgett, A., McKinney, L. & Nielsen, L. & 10 others, Douglas, G., Kjaer, E., Downie, A., Boshier, D., Lee, S., Clark, J., Grant, M., Bancroft, I., Caccamo, M. & Buggs, R., 12 Jan 2017, In: Nature. 541, 7636, p. 212-216 5 p.

  Research output: Contribution to journal › Article › peer-review

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• Identification of candidate genes for calcium and magnesium accumulation in Brassica napus L. by association genetics

  Alcock, T. D., Havlickova, L., He, Z., Bancroft, I., White, P. J., Broadley , M. R. & Graham, N. S., 15 Nov 2017, In: Frontiers in Plant Science.

  Research output: Contribution to journal › Article › peer-review

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• Variation across a wheat genetic diversity panel for saccharification of hydrothermally pretreated straw

  Collins, S. R. A., Wilson, D. R., Moates, G. K., Harper, A. L., Bancroft, I. & Waldron, K. W., 2 Oct 2017, In: Biotechnology for biofuels. 10, 227, 10 p.

  Research output: Contribution to journal › Article › peer-review

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• Variation in susceptibility to microbial lignin oxidation in a set of wheat straw cultivars: influence of genetic, seasonal and environmental factors

  Konstantopoulou, M., Slator, P. J., Taylor, C. R., Bugg, T. D. H., Wellington, E., Allison, G., Harper, A. L. & Bancroft, I., 20 Dec 2017, In: Nordic Pulp & Paper Research Journal.

  Research output: Contribution to journal › Article › peer-review

• 2016

  Elucidation of the genetic basis of variation for stem strength characteristics in bread wheat by Associative Transcriptomics

  Miller, C. N., Harper, A. L., Trick, M., Werner, P., Waldron, K. & Bancroft, I., 16 Jul 2016, In: BMC Genomics. 21 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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• Molecular markers for tolerance of European ash (Fraxinus excelsior) to dieback disease identified using Associative Transcriptomics

  Harper, A. L., McKinney, L. V., Nielsen, L. R., Havlickova, L., Li, Y., Trick, M., Fraser, F., Wang, L., Fellgett, A., Sollars, E. S. A., Janacek, S. H., Downie, J. A., Buggs, R. J. A., Kjær, E. D. & Bancroft, I., 13 Jan 2016, In: Scientific Reports. 6, 7 p., 19335.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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• Root morphology and seed and leaf ionomic traits in a Brassica napus L. diversity panel show wide phenotypic variation and are characteristic of crop habit

  Thomas, C. L., Alcock, T. D., Graham, N. S., Hayden , R., Matterson , S., Wilson , L., Young, S. D., Dupuy, L. X., White, P. J., Hammond, J. P., Danku, J. M. C., Salt, D. E., Sweeney, A. G., Bancroft, I. & Broadley , M. R., 4 Oct 2016, In: BMC Plant Biology. 16, 18 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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• 2015

  Collinearity analysis of Brassica A and C genomes based on an updated inferred unigene order

  Bancroft, I., Fraser, F., Morgan, C. & Trick, M., Jun 2015, In: Data in Brief. 3, p. 51-55

  Research output: Contribution to journal › Article › peer-review

• Construction of Brassica A and C genome-based ordered pan-transcriptomes for use in rapeseed genomic research.

  He, Z., Cheng, F., Li, Y., Wang, X., Parkin, I. A. P., Chalhoub, B., Liu, S. & Bancroft, I., Sept 2015, In: Data in Brief. 4, p. 357-362 6 p.

  Research output: Contribution to journal › Article › peer-review

• Effect of Brassica napus cultivar on cellulosic ethanol yield

  Wood, I. P., Wellner, N., Elliston, A., Wilson, D. R., Bancroft, I. & Waldron, K. W., 11 Jul 2015, In: Biotechnology for biofuels. 8, 99.

  Research output: Contribution to journal › Article › peer-review

• Genome distribution of differential homoeologue contributions to leaf gene expression in bread wheat

  Harper, A. L., Trick, M., He, Z., Clissold, L., Fellgett, A., Griffiths, S. & Bancroft, I., 2015, In: Plant biotechnology journal. 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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• Identification, evolution, and expression partitioning of miRNAs in allopolyploid Brassica napus

  Shen, E., Zou, J., Hubertus Behrens, F., Chen, L., Ye, C., Dai, S., Li, R., Ni, M., Jiang, X., Qiu, J., Liu, Y., Wang, W., Zhu, Q.-H., Chalhoub, B., Bancroft, I., Meng, J., Cai, D. & Fan, L., 1 Dec 2015, In: Journal of Experimental Botany. 66, 22, p. 7241-53 13 p.

  Research output: Contribution to journal › Article › peer-review

• Identification of a gene controlling variation in the salt tolerance of rapeseed (Brassica napus L.)

  Yong, H.-Y., Wang, C., Bancroft, I., Li, F., Wu, X., Kitashiba, H. & Nishio, T., Jul 2015, In: Planta. 242, 1, p. 313-326 14 p.

  Research output: Contribution to journal › Article › peer-review

• Seedling development traits in Brassica napus examined by gene expression analysis and association mapping

  Körber, N., Bus, A., Li, J., Higgins, J., Bancroft, I., Higgins, E. E., Parkin, I. A. P., Salazar-Colqui, B., Snowdon, R. J. & Stich, B., 9 Jun 2015, In: BMC Plant Biology. 15, 136, p. 1-21 21 p.

  Research output: Contribution to journal › Article › peer-review
• 2014

  A Novel and Fast Approach for Population Structure Inference Using Kernel-PCA and Optimization

  Popescu, A.-A., Harper, A. L., Trick, M., Bancroft, I. & Huber, K. T., Dec 2014, In: Genetics. 198, 4, p. 1421-1431 11 p.

  Research output: Contribution to journal › Article › peer-review

• Associative Transcriptomics Study Dissects the Genetic Architecture of Seed Glucosinolate Content in Brassica napus

  Lu, G., Harper, A. L., Trick, M., Morgan, C., Fraser, F., O'Neill, C. & Bancroft, I., Dec 2014, In: DNA Research. 21, 6, p. 613-625 551332.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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• Dissection of control of anion homeostasis by Associative Transcriptomics in Brassica napus

  Koprivova, A., Harper, A. L., Trick, M., Bancroft, I. & Kopriva, S., 30 Aug 2014, In: Plant Physiology. 166, September, p. 442-450

  Research output: Contribution to journal › Article › peer-review

• Early allopolyploid evolution in the post-neolithic Brassica napus oilseed genome

  Chalhoub, B., Denoeud, F., Liu, S., Parkin, I. A. P., Tang, H., Wang, X., Chiquet, J., Belcram, H., Tong, C., Samans, B., Corréa, M., Da Silva, C., Just, J., Falentin, C., Koh, C. S., Le Clainche, I., Bernard, M., Bento, P., Noel, B. & Labadie, K. & 62 others, Alberti, A., Charles, M., Arnaud, D., Guo, H., Daviaud, C., Alamery, S., Jabbari, K., Zhao, M., Edger, P. P., Chelaifa, H., Tack, D., Lassalle, G., Mestiri, I., Schnel, N., Le Paslier, M. C., Fan, G., Renault, V., Bayer, P. E., Golicz, A. A., Manoli, S., Lee, T. H., Thi, V. H. D., Chalabi, S., Hu, Q., Fan, C., Tollenaere, R., Lu, Y., Battail, C., Shen, J., Sidebottom, C. H. D., Wang, X., Canaguier, A., Chauveau, A., Bérard, A., Deniot, G., Guan, M., Liu, Z., Sun, F., Lim, Y. P., Lyons, E., Town, C. D., Bancroft, I., Wang, X., Meng, J., Ma, J., Pires, J. C., King, G. J., Brunel, D., Delourme, R., Renard, M., Aury, J. M., Adams, K. L., Batley, J., Snowdon, R. J., Tost, J., Edwards, D., Zhou, Y., Hua, W., Sharpe, A. G., Paterson, A. H., Guan, C. & Wincker, P., 22 Aug 2014, In: Science. 345, 6199, p. 950-953 4 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Genome-Wide Association Study Dissects the Genetic Architecture of Seed Weight and Seed Quality in Rapeseed (Brassica napus L.)

  Li, F., Chen, B., Xu, K., Wu, J., Song, W., Bancroft, I., Harper, A. L., Trick, M., Liu, S., Gao, G., Wang, N., Yan, G., Qiao, J., Li, J., Li, H., Xiao, X., Zhang, T. & Wu, X., 1 Aug 2014, In: DNA Research. 21, 4

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Genome-wide investigation of genetic changes during modern breeding of Brassica napus

  Wang, N., Li, F., Chen, B., Xu, K., Yan, G., Qiao, J., Li, J., Gao, G., Bancroft, I., Meng, J., King, G. J. & Wu, X., 20 Aug 2014, In: TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 127, 8, p. 1817-29 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Steam explosion of oilseed rape straw: establishing key determinants of saccharification efficiency

  Wood, I. P., Elliston, A., Collins, S. R. A., Wilson, D., Bancroft, I. & Waldron, K. W., Jun 2014, In: BIORESOURCE TECHNOLOGY. 162, p. 175-183 9 p.

  Research output: Contribution to journal › Article › peer-review

• The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

  Liu, S., Liu, Y., Yang, X., Tong, C., Edwards, D., Parkin, I. A. P., Zhao, M., Ma, J., Yu, J., Huang, S., Wang, X., Wang, J., Lu, K., Fang, Z., Bancroft, I., Yang, T.-J., Hu, Q., Wang, X., Yue, Z. & Li, H. & 66 others, Yang, L., Wu, J., Zhou, Q., Wang, W., King, G. J., Pires, J. C., Lu, C., Wu, Z., Sampath, P., Wang, Z., Guo, H., Pan, S., Yang, L., Min, J., Zhang, D., Jin, D., Li, W., Belcram, H., Tu, J., Guan, M., Qi, C., Du, D., Li, J., Jiang, L., Batley, J., Sharpe, A. G., Park, B.-S., Ruperao, P., Cheng, F., Waminal, N. E., Huang, Y., Dong, C., Wang, L., Li, J., Hu, Z., Zhuang, M., Huang, Y., Huang, J., Shi, J., Mei, D., Liu, J., Lee, T.-H., Wang, J., Jin, H., Li, Z., Li, X., Zhang, J., Xiao, L., Zhou, Y., Liu, Z., Liu, X., Qin, R., Tang, X., Liu, W., Wang, Y., Zhang, Y., Lee, J., Kim, H. H., Denoeud, F., Xu, X., Liang, X., Hua, W., Wang, X., Wang, J., Chalhoub, B. & Paterson, A. H., 23 May 2014, In: Nature Communications. 5, 3930.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• The control of seed oil polyunsaturate content in the polyploid crop species Brassica napus

  Wells, R., Trick, M., Soumpourou, E., Clissold, L., Morgan, C., Werner, P., Gibbard, C., Clarke, M., Jennaway, R. & Bancroft, I., Feb 2014, In: Molecular Breeding. 33, 2, p. 349-362 14 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea

  Parkin, I. A., Koh, C., Tang, H., Robinson, S. J., Kagale, S., Clarke, W. E., Town, C. D., Nixon, J., Krishnakumar, V., Bidwell, S. L., Denoeud, F., Belcram, H., Links, M. G., Just, J., Clarke, C., Bender, T., Huebert, T., Mason, A. S., Pires, C. J. & Barker, G. & 12 others, Moore, J., Walley, P. G., Manoli, S., Batley, J., Edwards, D., Nelson, M. N., Wang, X., Paterson, A. H., King, G., Bancroft, I., Chalhoub, B. & Sharpe, A. G., 10 Jun 2014, In: Genome biology. 15, 6, R77.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Variation in the chemical composition of wheat straw: the role of tissue ratio and composition

  Collins, S. R., Wellner, N., Martinez Bordonado, I., Harper, A. L., Miller, C. N., Bancroft, I. & Waldron, K. W., 2014, In: Biotechnology for biofuels. 7, 1, p. 1-14

  Research output: Contribution to journal › Article › peer-review
• 2013

  Conserved microstructure of the Brassica B Genome of Brassica nigra in relation to homologous regions of Arabidopsis thaliana, B. rapa and B. oleracea

  Navabi, Z.-K., Huebert, T., Sharpe, A. G., O'Neill, C. M., Bancroft, I. & Parkin, I. A. P., 15 Apr 2013, In: BMC Genomics. 14, 1, 250.

  Research output: Contribution to journal › Article › peer-review

• Sequencing-based variant detection in the polyploid crop oilseed rape

  Wells, R., Trick, M., Fraser, F., Soumpourou, E., Clissold, L., Morgan, C., Pauquet, J. & Bancroft, I., 6 Aug 2013, In: BMC Plant Biology. 13, 1, 111.

  Research output: Contribution to journal › Article › peer-review