Research output per year
Research output per year
Personal profile
Research interests
Carbohydrate chemistry, glycobiology, method development for X-ray crystallography and cryoEM.
Biography
Royal Society University Research Fellow in YSBL (University of York, UK), 2017-present
Postdoctoral research associate in YSBL (University of York, UK), 2013 - 2017
Short stages at IBS in 2009 (Grenoble, France) and Institut Pasteur in 2011 (Paris, France)
PhD in Biophysics in 2009, obtained summa cum laude (Bilbao, Spain)
Computer Engineer, graduated with honours in 2002 (San Sebastian, Spain)
External positions
Postdoctoral research assistant, Fundación Biofisica Bizkaia
29 May 2011 → 9 Apr 2013
Postdoctoral research assistant, University of the Basque Country
29 May 2009 → 28 May 2011
EMBO Short-term fellowship ASTF 309.00-2008, EUROPEAN MOLECULAR BIOLOGY ORGANISATION (EMBO)
5 Jan 2009 → 5 Mar 2009
Keywords
- QD Chemistry
- QA75 Electronic computers. Computer science
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Allosteric control of dynamin-related protein 1-catalyzed mitochondrial fission through a conserved disordered C-terminal Short Linear Motif
Pérez-Jover, I., Rochon, K., Hu, D., Mohan, P. M., Santos-Perez, I., Gisasola, J. O., Galvez, J. M. M., Agirre, J., Qi, X., Mears, J. A., Shnyrova, A. V. & Ramachandran, R., 13 Jul 2023, Research Square.Research output: Working paper › Preprint
Open Access -
Analysis and validation of overall N-glycan conformation in Privateer
Dialpuri, J. S., Bagdonas, H., Atanasova, M., Schofield, L. C., Hekkelman, M. L., Joosten, R. P. & Agirre, J., 1 Jun 2023, In: Acta crystallographica. Section D, Structural biology. D79, p. 462–472 11 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile -
The CCP4 suite: integrative software for macromolecular crystallography
Agirre, J., Atanasova, M., Bagdonas, H., Ballard, C. B., Baslé, A., Beilsten-Edmands, J., Borges, R. J., Brown, D. G., Burgos-Mármol, J. J., Berrisford, J. M., Bond, P. S., Caballero, I., Catapano, L., Chojnowski, G., Cook, A. G., Cowtan, K. D., Croll, T. I., Debreczeni, J. É., Devenish, N. E., Dodson, E. J., & 74 others, 1 Jun 2023, In: Acta crystallographica. Section D, Structural biology. 79, Pt 6, p. 449-461 13 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile
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A macromolecular structure building toolkit for machine learning and cloud applications
BBSRC (BIOTECHNOLOGY AND BIOLOGICAL SCIENCES RESEARCH COUNCIL)
1/05/23 → 30/04/26
Project: Research project (funded) › Research
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URF Renewal Enhancements - Years 1, 2 and 3
1/10/22 → 30/09/25
Project: Research project (funded) › Research
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CCP4-BCA Summer School 2023
Johan P. Turkenburg (Organiser), Jon Agirre (Organiser) & Paul Bond (Organiser)
19 Aug 2023 → 25 Aug 2023Activity: Participating in or organising an event › Conference participation
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CCP4, Research Complex at Harwell, Rutherford Appleton Laboratory, Harwell Oxford, Didcot OX11 0FA, England. (External organisation)
Jon Agirre (Chair)
Feb 2023 → …Activity: Membership › Board
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Proteins by Candlelight 2022
Jon Agirre (Organiser)
2022 → …Activity: Participating in or organising an event › Conference
Datasets
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R21223 - Integrative Structural Glycobiology
Agirre, J. (Creator), University of York, 19 Dec 2022
DOI: 10.15124/dec7921d-8d73-485e-9539-9983c534b2e1
Dataset
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Updated restraint dictionaries for carbohydrates in the pyranose form
Atanasova, M. (Creator), Nicholls, R. A. (Creator), Joosten, R. (Creator) & Agirre, J. (Creator), Zenodo, 7 Dec 2021
Dataset