Yi Li

Search results

• 2023

  Whole genome structural predictions reveal hidden diversity in putative oxidative enzymes of the lignocellulose-degrading ascomycete Parascedosporium putredinis NO1

  Scott, C., Leadbeater, D. R., Oates, N. C., James, S., Newling, K., Li, Y., McGregor, N. G. S., Bird, S. & Bruce, N. C., 9 Oct 2023, (E-pub ahead of print) In: Microbiology spectrum. 21 p.

  Research output: Contribution to journal › Article › peer-review

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• 2022

  A functionally conserved STORR gene fusion in Papaver species that diverged 16.8 million years ago

  Catania, T. M., Li, Y., Winzer, T. H., Harvey, D., Meade, F. G., Caridi, A., Leech, A., Larson, T., Ning, Z., Chang, J., Van De Peer, Y. & Graham, I. A., 7 Jun 2022, In: Nature Communications. 13, 11 p., 3150.

  Research output: Contribution to journal › Article › peer-review

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• Allele-aware chromosome-level genome assembly of Artemisia annua reveals the correlation between ADS expansion and artemisinin yield

  Liao, B., Shen, X., Xiang, L., Guo, S., Chen, S., Meng, Y., Liang, Y., Ding, D., Bai, J., Zhang, D., Czechowski, T., Li, Y., Yao, H., Ma, T., Howard, C., Sun, C., Liu, H., Liu, J., Pei, J. & Gao, J. & 10 others, Wang, J., Qiu, X., Huang, Z., Li, H., Yuan, L., Wei, J., Graham, I. A., Xu, J., Zhang, B. & Chen, S., 4 Aug 2022, In: Molecular plant. 15, 8, p. 1310-1328 19 p.

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• Artemisia annua L. plants lacking Bornyl diPhosphate Synthase reallocate carbon from monoterpenes to sesquiterpenes except artemisinin

  Czechowski, T., Branigan, C. A., Rae, A. M., Rathbone, D. A., Larson, T., Harvey, D., Catania, T. M., Zhang, D., Li, Y., Salmon, M., Bowles, D. J., O'Maille, P. & Graham, I. A., 12 Oct 2022, In: Frontiers in Plant Science. 13, 16 p., 1000819.

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• Author correction (erratum) to 'A functionally conserved STORR gene fusion in Papaver species that diverged 16.8 million years ago': This corrects the article A functionally conserved STORR gene fusion in Papaver species that diverged 16.8 million years ago' in volume 13, 3150.

  Catania, T. M., Li, Y., Winzer, T. H., Harvey, D., Meade, F. G., Caridi, A., Leech, A., Larson, T. R., Ning, Z., Chang, J., Van De Peer, Y. & Graham, I. A., 29 Jun 2022, In: Nature Communications. 13, p. 3755 13.

  Research output: Contribution to journal › Article › peer-review

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• Gene discovery and virus induced gene silencing reveal branched pathways to major classes of bioactive diterpenoids in Euphorbia peplus

  Czechowski, T., Forestier, E. C. F., Swamidatta, S., Gilday, A. D., Cording, A., Larson, T., Harvey, D., Li, Y., He, Z., King, A. J., Brown, G. D. & Graham, I. A., 18 May 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 21, 7 p., e2203890119.

  Research output: Contribution to journal › Article › peer-review

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• 2021

  A chromosome-level Amaranthus cruentus genome assembly highlights gene family evolution and biosynthetic gene clusters that may underpin the nutritional value of this traditional crop

  Ma, X., Vaistij, F. E., Li, Y., Jansen van Rensburg, W. S., Harvey, S. E., Bairu, M. W., Venter, S. L., Mavengahama, S., Ning, Z., Graham, I. A., Van Deynze, A., Van de Peer, Y. & Denby, K., Jul 2021, In: The Plant journal. 107, 2, p. 613-628

  Research output: Contribution to journal › Article › peer-review

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• A model investigation of the impact of lower hybrid wave scattering angle on current drive profile in EAST and Alcator C-Mod

  Baek, S. G., Biswas, B., Wallace, G. M., Bonoli, P. T., Ding, B. J., Li, M. H., Li, Y. C., Wang, Y. F., Wang, M., Wu, C. B., Yan, G. H., Chen, J., Zhai, X., Garofalo, A. M., Choi, W., Poli, F. & Shiraiwa, S., 20 Sept 2021, In: Nuclear Fusion. 61, 10, 16 p., 106034.

  Research output: Contribution to journal › Article › peer-review

• A multi-omics approach to lignocellulolytic enzyme discovery reveals a new ligninase activity from Parascedosporium putredinis NO1

  Oates, N. C., Abood, A., Schirmacher, A., Alessi, A. M., Bird, S. M., Bennett, J., Leadbeater, D. R., Li, Y., Dowle, A., Liu, S., Tymokhin, V. I., Ralph, J., McQueen Mason, S. J. & Bruce, N. C., 26 Apr 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 18, 10 p., e2008888118.

  Research output: Contribution to journal › Article › peer-review

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• Characterisation of the enzyme transport path between shipworms and their bacterial symbionts

  Pesante, G., Sabbadin, F., Elias, L., Steele-King, C., Shipway, J. R., Dowle, A., Li, Y., Busse-Wicher, M., Dupree, P., Besser, K., Cragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 1 Nov 2021, In: BMC Biology. 19, 233, 18 p.

  Research output: Contribution to journal › Article › peer-review

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• Genome structural evolution in Brassica crops

  He, Z., Ji, R., Havlickova, L., Wang, L., Li, Y., Lee, H. T., Song, J., Koh, C., Yang, J., Zhang, M., Parkin, I. A. P., Wang, X., Edwards, D., King, G. J., Zou, J., Liu, K., Snowdon, R. J., Banga, S. S., Machackova, I. & Bancroft, I., Jun 2021, In: Nature Plants. 7, 6, p. 757-765

  Research output: Contribution to journal › Article › peer-review

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• 2020

  Mechanistic strategies of microbial communities regulating lignocellulose deconstruction in a UK salt marsh

  Leadbeater, D. R., Oates, N. C., Bennett, J., Li, Y., Dowle, A., Taylor, J. D., Sanchez Alponti, J., Setchfield, A., Alessi, A. M., Helgason, T., McQueen Mason, S. J. & Bruce, N. C., 2 Nov 2020, (Accepted/In press) In: Microbiome.

  Research output: Contribution to journal › Article › peer-review

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• Over 100 million years of enzyme evolution underpinning the production of morphine in the Papaveraceae family of flowering plants

  Li, Y., Winzer, T. H., He, Z. & Graham, I. A., 9 Mar 2020, In: Plant Communications. 1, 2, 48 p., 100029.

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• Selection of a subspecies-specific diterpene gene cluster implicated in rice disease resistance

  Zhan, C., Lei, L., Liu, Z., Zhou, S., Yang, C., Zhu, X., Guo, H., Zhang, F., Peng, M., Zhang, M., Li, Y., Yang, Z., Sun, Y., Shi, Y., Li, K., Liu, L., Shen, S., Wang, X., Li, Y. & Czechowski, T. & 9 others, Hasegawa, M., Graham, I. A., Tohge, T., Qu, L., Liu, X., Fernie, A. R., Chen, L.-L., Yuan, M. & Luo, J., 7 Dec 2020, In: Nature Plants. 6, p. 1447–1454 8 p.

  Research output: Contribution to journal › Article › peer-review

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• 2019

  Structure of Papaver somniferum O-Methyltransferase 1 Reveals Initiation of Noscapine Biosynthesis with Implications for Plant Natural Product Methylation

  Cabry, M. P., Offen, W. A., Saleh, P., Li, Y., Winzer, T., Graham, I. A. & Davies, G. J., 3 May 2019, In: ACS Catalysis. 9, 5, p. 3840–3848 9 p.

  Research output: Contribution to journal › Article › peer-review

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• Study of backward terahertz radiation from intense picosecond laser-solid interactions using a multichannel calorimeter system

  Liu, H., Liao, G. Q., Zhang, Y. H., Zhu, B. J., Zhang, Z., Li, Y. T., Scott, G. G., Rusby, D., Armstrong, C., Zemaityte, E., Bradford, P., Woolsey, N., Huggard, P., McKenna, P. & Neely, D., 22 Jan 2019, (E-pub ahead of print) In: High Power Laser Science and Engineering. 7, 7 p.

  Research output: Contribution to journal › Article › peer-review

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• 2018

  An ancient family of lytic polysaccharide monooxygenases with roles in arthropod development and biomass digestion

  Sabbadin, F., Hemsworth, G. R., Ciano, L., Henrissat, B., Dupree, P., Tryfona, T., Marques, R. D. S., Sweeney, S. T., Besser, K., Elias, L., Pesante, G., Li, Y., Dowle, A. A., Bates, R., Gomez, L. D., Simister, R., Davies, G. J., Walton, P. H., Bruce, N. C. & McQueen-Mason, S. J., 22 Feb 2018, In: Nature Communications. 9, 1, 12 p., 756.

  Research output: Contribution to journal › Article › peer-review

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• Defining functional diversity for lignocellulose degradation in a microbial community using multi-omics studies

  Alessi, A., Bird, S., Oates, N. C., Li, Y., Dowle, A. A., Novotny, E., deAzevedo, E., Bennett, J. P., Polikarpov, I., Young, J. P. W., McQueen Mason, S. J. & Bruce, N. C., 18 Jun 2018, In: Biotechnology for biofuels. 11, 166, 16 p.

  Research output: Contribution to journal › Article › peer-review

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• Hemocyanin facilitates lignocellulose digestion by wood-boring marine crustaceans

  Besser, K., Malyon, G. P., Eborall, W. S., Paro da Cunha, G., Goncalves Filgueiras, J., Dowle, A., Cruz Garcia, L., Page, S. J., Dupree, R., Kern, M. F., Gomez, L. D., Li, Y., Elias, L., Sabbadin, F., Mohamad, S. E., Pesante, G., Steele-King, C. G., Ribeiro de Azevedo, E., Polikarpov, I. & Dupree, P. & 3 others, Cragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 3 Dec 2018, In: Nature Communications. 9, 1, 14 p., 5125.

  Research output: Contribution to journal › Article › peer-review

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• MOTHER-OF-FT-AND-TFL1 represses seed germination under far-red light by modulating phytohormone responses in Arabidopsis thaliana

  Vaistij, F. E., Barros Galvão, T., Cole, A., Gilday, A. D., He, Z., Li, Y., Harvey, D., Larson, T. R. & Graham, I. A., 14 Aug 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 33, p. 8442-8447 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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• The opium poppy genome and morphinan production.

  Guo, L., Winzer, T. H., Yang, X., Li, Y., Ning, Z., He, Z., Teodor, R. I., Lu, Y., Bowser, T., Graham, I. A. & Ye, K., 19 Oct 2018, In: Science. 362, 6412, p. 343-347 5 p.

  Research output: Contribution to journal › Article › peer-review

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• Uncovering the molecular mechanisms of lignocellulose digestion in shipworms

  Sabbadin, F., Pesante, G., Elias, L., Besser, K., Li, Y., Steele-King, C. G., Stark, M., Rathbone, D. A., Dowle, A., Bates, R., Shipway, J. R., Cragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 7 Mar 2018, In: Biotechnology for biofuels. 11, 59

  Research output: Contribution to journal › Article › peer-review

  Open Access

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• 2017

  Genome sequence and genetic diversity of European ash trees

  Sollars, E., Harper, A. L., Kelly, L., Sambles, C., Ramirez-Gonzalez, R., Swarbreck, D., Kaithakottil, G., Cooper, E., Uauy, C., Havlickova, L., Worswick, G., Studholme, D., Zohren, J., Salmon, D., Clavijo, B., Li, Y., He, Z., Fellgett, A., McKinney, L. & Nielsen, L. & 10 others, Douglas, G., Kjaer, E., Downie, A., Boshier, D., Lee, S., Clark, J., Grant, M., Bancroft, I., Caccamo, M. & Buggs, R., 12 Jan 2017, In: Nature. 541, 7636, p. 212-216 5 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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• Mannitol biosynthesis in algae: more widespread and diverse than previously thought

  Tonon, T., McQueen Mason, S. J. & Li, Y., 6 Feb 2017, In: New Phytologist. 213, 4, p. 1573-1579 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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• Revealing the insoluble metasecretome of lignocellulosedegrading microbial communities

  Alessi, A., Bird, S., Bennett, J. P., Oates, N. C., Li, Y., Dowle, A., Polikarpov, I., Young, J. P. W., McQueen Mason, S. J. & Bruce, N. C., 24 May 2017, In: Scientific Reports. 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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• 2016

  Molecular markers for tolerance of European ash (Fraxinus excelsior) to dieback disease identified using Associative Transcriptomics

  Harper, A. L., McKinney, L. V., Nielsen, L. R., Havlickova, L., Li, Y., Trick, M., Fraser, F., Wang, L., Fellgett, A., Sollars, E. S. A., Janacek, S. H., Downie, J. A., Buggs, R. J. A., Kjær, E. D. & Bancroft, I., 13 Jan 2016, In: Scientific Reports. 6, 7 p., 19335.

  Research output: Contribution to journal › Article › peer-review

  Open Access

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• 2015

  Construction of Brassica A and C genome-based ordered pan-transcriptomes for use in rapeseed genomic research.

  He, Z., Cheng, F., Li, Y., Wang, X., Parkin, I. A. P., Chalhoub, B., Liu, S. & Bancroft, I., Sept 2015, In: Data in Brief. 4, p. 357-362 6 p.

  Research output: Contribution to journal › Article › peer-review

• Morphinan biosynthesis in opium poppy requires a P450-oxidoreductase fusion protein

  Winzer, T. H., Kern, M. F., King, A. J., Larson, T., Teodor, R. I., Donninger, S., Li, Y., Dowle, A., Cartwright, J., Bates, R., David, A., Thomas, J., Walker, C., Bowser, T. & Graham, I. A., 17 Jul 2015, In: Science. 349, 6245, p. 309-312

  Research output: Contribution to journal › Article › peer-review
• 2014

  Targeted mutation of Δ12 and Δ15 desaturase genes in hemp produce major alterations in seed fatty acid composition including a high oleic hemp oil.

  Bielecka, M., Kaminski, F., Adams, I., Poulson, H., Sloan, R., Li, Y., Larson, T. R., Winzer, T. & Graham, I. A., 2014, In: Plant biotechnology journal. 12, 5, p. 613-623 11 p.

  Research output: Contribution to journal › Article › peer-review
• 2013

  Linkage mapping in the oilseed crop Jatropha curcas L. reveals a locus controlling the biosynthesis of phorbol esters which cause seed toxicity.

  King, A. J., Montes, L., Clarke, J. G., Affleck, J., Li, Y., Witsenboer, H., van der Vossen, E., van der Linde, P., Tripathi, Y., Tavares, E., Shukla, P., Rajasekaran, T., van Loo, E. & Graham, I. A., Oct 2013, In: Plant biotechnology journal. 11, 8, p. 986-996 11 p.

  Research output: Contribution to journal › Article › peer-review

• Stochastic silencing phenotype of Arabidopsis morc6 mutants reveals a role in efficient RNA-directed DNA methylation

  Brabbs, T. R., He, Z., Hogg, K., Kamenski, A., Li, Y., Paszkiewicz, K. H., Moore, K. A., O'Toole, P. J., Graham, I. A. & Jones, L., 16 May 2013, In: The Plant journal. Early View, n/a, p. n/a 11 p.

  Research output: Contribution to journal › Article › peer-review
• 2012

  A Papaver somniferum 10-gene cluster for synthesis of the anticancer alkaloid noscapine.

  Winzer, T. H., Gazda, V., He, Z., Kaminski, F., Kern, M. F., Larson, T. R., Li, Y., Meade, F., Teodor, R. I., Vaistij, F. E., Walker, C., Bowser, T. & Graham, I. A., 29 Jun 2012, In: Science. 336, 6089, p. 1704-1708 5 p.

  Research output: Contribution to journal › Article › peer-review
• 2011

  Profiling the developing Jatropha curcas L: Seed transcriptome by pyrosequencing

  King, A. J., Li, Y. & Graham, I. A., Sept 2011, In: BioEnergy Research. 4, 3, p. 211-221 11 p.

  Research output: Contribution to journal › Article › peer-review
• 2010

  Molecular insight into lignocellulose digestion by a marine isopod in the absence of gut microbes

  King, A. J., Cragg, S. M., Li, Y., Dymond, J., Guille, M. J., Bowles, D. J., Bruce, N. C., Graham, I. A. & McQueen-Mason, S. J., 23 Mar 2010, In: Proceedings of the National Academy of Sciences of the United States of America. 107, 12, p. 5345-5350 6 p.

  Research output: Contribution to journal › Article › peer-review

• The genetic map of Artemisia annua L. identifies multiple loci affecting yield of the antimalarial drug artemisinin

  Graham, I. A., Besser, K., Blumer, S., Branigan, C. A., Czechowski, T., Elias, L., Guterman, I., Harvey, D., Isaac, P. G., Khan, A. M., Larson, T. R., Li, Y., Pawson, T., Penfield, T., Rae, A. M., Rathbone, D. A., Reid, S., Ross, J., Smallwood, M. F. & Segura, V. & 4 others, Townsend, T., Vyas, D., Winzer, T. & Bowles, D., 15 Jan 2010, In: Science. 327, 5963, p. 328-331 4 p.

  Research output: Contribution to journal › Article › peer-review
• 2009

  Divergent Regulation of Terpenoid Metabolism in the Trichomes of Wild and Cultivated Tomato Species

  Besser, K., Welsby, N., Schauvinhold, I., Slocombe, S., Li, Y., Dixon, R. A., Broun, P. & Harper, A. L., Jan 2009, In: Plant Physiology. 149, 1, p. 499-514 16 p.

  Research output: Contribution to journal › Article › peer-review
• 2008

  High-Mach number collisionless shock and photo-ionized non-LTE plasma for laboratory astrophysics with intense lasers

  Takabe, H., Kato, T. N., Sakawa, Y., Kuramitsu, Y., Morita, T., Kadono, T., Shigemori, K., Otani, K., Nagatomo, H., Norimatsu, T., Dono, S., Endo, T., Miyanishi, K., Kimura, T., Shiroshita, A., Ozaki, N., Kodama, R., Fujioka, S., Nishimura, H. & Salzman, D. & 27 others, Loupias, B., Gregory, C., Koenig, M., Waugh, J. N., Woolsey, N. C., Kato, D., Li, Y.-T., Dong, Q.-L., Wang, S.-J., Zhang, Y., Zhao, J., Wang, F.-L., Wei, H.-G., Shi, J.-R., Zhao, G., Zhang, J.-Y., Wen, T.-S., Zhang, W.-H., Hu, X., Liu, S.-Y., Ding, Y. K., Zhang, L., Tang, Y.-J., Zhang, B.-H., Zheng, Z.-J., Sheng, Z.-M. & Zhang, J., Dec 2008, In: Plasma Physics and Controlled Fusion. 50, 12, p. - 15 p., 124057.

  Research output: Contribution to journal › Article › peer-review

• Social mobility and social capital in contemporary Britain

  Li, Y., Savage, M. & Warde, A., Sept 2008, In: Sociology: A Journal of the British Sociological Association. 59, 3, p. 391-411 21 p.

  Research output: Contribution to journal › Article › peer-review

• Transcriptomic and Reverse Genetic Analyses of Branched-Chain Fatty Acid and Acyl Sugar Production in Solanum pennellii and Nicotiana benthamiana

  Slocombe, S. P., Schauvinhold, I., McQuinn, R. P., Besser, K., Welsby, N. A., Harper, A. L., Aziz, N., Li, Y., Larson, T. R., Giovannoni, J., Dixon, R. A. & Broun, P., Dec 2008, In: Plant Physiology. 148, 4, p. 1830-1846 17 p.

  Research output: Contribution to journal › Article › peer-review
• 2006

  Arabidopsis ABA INSENSITIVE4 regulates lipid mobilization in the embryo and reveals repression of seed germination by the endosperm

  Penfield, S., Li, Y., Gilday, A. D., Graham, S. & Graham, I. A., Aug 2006, In: The Plant Cell. 18, 8, p. 1887-1899 13 p.

  Research output: Contribution to journal › Article › peer-review
• 2005

  Acyl-CoA elongase activity and gene from the marine microalga Pavlova lutheri (Haptophyceae).

  Tonon, T., Harvey, D., Larson, T. R., Li, Y. & Graham, I. A., Mar 2005, In: Journal of applied phycology. 17, 2, p. 111-118 8 p.

  Research output: Contribution to journal › Article › peer-review

• Fatty acid desaturases from the microalga Thalassiosira pseudonana

  Tonon, T., Sayanova, O., Michaelson, L. V., Qing, R., Harvey, D., Larson, T., Li, Y., Napier, J. A. & Graham, I. A., Jul 2005, In: FEBS Journal. 272, 13, p. 3401-3412 12 p.

  Research output: Contribution to journal › Article › peer-review

• Identification of a long-chain polyunsaturated fatty acid acyl-coenzyme a synthetase from the diatom Thalassiosira pseudonana

  Tonon, T., Qing, R., Harvey, D., Li, Y., Larson, T. R. & Graham, I. A., May 2005, In: Plant Physiology. 138, 1, p. 402-408 7 p.

  Research output: Contribution to journal › Article › peer-review

• Social capital and social trust in Britain

  Li, Y., Pickles, A. & Savage, M., 2005, In: European Sociological Review. 21, 2, p. 109 1 p.

  Research output: Contribution to journal › Article › peer-review

• 2004

  Identification of a fatty acid Delta 11-desaturase from the microalga Thalassiosira pseudonana

  Tonon, T., Harvey, D., Qing, R., Li, Y., Larson, T. R. & Graham, I. A., 9 Apr 2004, In: FEBS Letters. 563, 1-3, p. 28-34 7 p.

  Research output: Contribution to journal › Article › peer-review

• Phylogenetic analysis of the plant endo-beta-1,4-glucanase gene family

  Libertini, E., Li, Y. & McQueen-Mason, S. J., May 2004, In: Journal of molecular evolution. 58, 5, p. 506-515 10 p.

  Research output: Contribution to journal › Article › peer-review
• 2003

  Evolution of substrate recognition across a multigene family of glycosyltransferases in Arabidopsis

  Lim, E. K., Baldauf, S., Li, Y., Elias, L., Worrall, D., Spencer, S. P., Jackson, R. G., Taguchi, G., Ross, J. & Bowles, D. J., Mar 2003, In: GLYCOBIOLOGY. 13, 3, p. 139-145 7 p.

  Research output: Contribution to journal › Article › peer-review

• Isolation of two cDNAs encoding E2 ubiquitin-conjugating enzymes from Pavlova lutheri (Haptophyceae).

  Tonon, T., Harvey, D., Li, Y. & Graham, I. A., Sept 2003, In: Journal of applied phycology. 15, 5, p. 425-432 8 p.

  Research output: Contribution to journal › Article › peer-review

• Is trehalose-6-phosphate a regulator of sugar metabolism in plants?

  Eastmond, P. J., Li, Y. & Graham, I. A., Jan 2003, In: Journal of Experimental Botany. 54, 382, p. 533-537 5 p.

  Research output: Contribution to journal › Article › peer-review

• Regioselectivity of glucosylation of caffeic acid by a UDP-glucose : glucosyltransferase is maintained in planta

  Lim, E. K., Higgins, G. S., Li, Y. & Bowles, D. J., 1 Aug 2003, In: Biochemical journal. 373, p. 987-992 6 p.

  Research output: Contribution to journal › Article › peer-review