C2D2 Consolidator 3a - York Computational Immunology Lab: Advancing Immunology Through Computational Modelling

Research output

Research output per year 2014 2014 2015 2016

• 4 Article
• 2 Conference contribution
• 1 Comment/debate

Research output per year

Research output per year

Search results

• 2016

  Extending and Applying Spartan to Perform Temporal Sensitivity Analyses for Predicting Changes in Influential Biological Pathways in Computational Models

  Alden, K. J., Timmis, J., Andrews, P., Veiga-Fernandes, H. & Coles, M. C., 2016, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
• 2015

  The rise in computational systems biology approaches for understanding NF-κB signaling dynamics

  Williams, R. A., Timmis, J. & Qwarnstrom, E., 14 Jul 2015, In: Science Signaling. 8, 385, fs13.

  Research output: Contribution to journal › Comment/debate › peer-review

• Using argument notation to engineer biological simulations with increased confidence

  Alden, K. J., Andrews, P. S., Polack, F. A. C., Veiga-Fernandes, H., Coles, M. C. & Timmis, J., 6 Mar 2015, (E-pub ahead of print) In: Interface. 12, 104, 11 p., 20141059.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
• 2014

  Applying spartan to Understand Parameter Uncertainty in Simulations

  Alden, K. J., Read, M. N., Andrews, P. S., Timmis, J. & Coles, M. C., Dec 2014, In: R Journal. 6, 2, p. 63-80 18 p.

  Research output: Contribution to journal › Article › peer-review

• Easing Parameter Sensitivity Analysis of Netlogo Simulations using SPARTAN

  Alden, K. J., Timmis, J. & Coles, M. C., 2014, The 14th International Conference on the Synthesis and Simulation of Living Systems. MIT Press , p. 622-628 7 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Modelling biological behaviours with the unified modelling language: an immunological case study and critique

  Read, M. N., Andrews, PAUL. S., Timmis, J. & Kumar, V., 6 Oct 2014, In: Interface. 11, 99, 20140704.

  Research output: Contribution to journal › Article › peer-review

• Novel Approaches to the Visualization and Quantification of Biological Simulations by Emulating Experimental Techniques

  Butler, J. A., Alden, K. J., Viega-Fernandes, H., Timmis, J. & Coles, M. C., 2014, Artificial Life 14: Proceedings of the Fourteenth International Conference on the Synthesis and Simulation of Living Systems. Sayama, H., Rieffel, J., Risi, S., Doursat, R. & Lipson, H. (eds.). MIT Press , p. 614-621 7 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution