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Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing

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Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing. / Bancroft, I.; Morgan, C.; Fraser, F.; Higgins, J.; Wells, R.; Clissold, L.; Trick, M.; Baker, D.; Long, Y.; Meng, J.; Wang, X.; Liu, S.

In: Nature Biotechnology, Vol. 29, No. 8, 01.08.2011, p. 762-766.

Research output: Contribution to journalArticlepeer-review

Harvard

Bancroft, I, Morgan, C, Fraser, F, Higgins, J, Wells, R, Clissold, L, Trick, M, Baker, D, Long, Y, Meng, J, Wang, X & Liu, S 2011, 'Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing', Nature Biotechnology, vol. 29, no. 8, pp. 762-766. https://doi.org/10.1038/nbt.1926

APA

Bancroft, I., Morgan, C., Fraser, F., Higgins, J., Wells, R., Clissold, L., Trick, M., Baker, D., Long, Y., Meng, J., Wang, X., & Liu, S. (2011). Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing. Nature Biotechnology, 29(8), 762-766. https://doi.org/10.1038/nbt.1926

Vancouver

Bancroft I, Morgan C, Fraser F, Higgins J, Wells R, Clissold L et al. Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing. Nature Biotechnology. 2011 Aug 1;29(8):762-766. https://doi.org/10.1038/nbt.1926

Author

Bancroft, I. ; Morgan, C. ; Fraser, F. ; Higgins, J. ; Wells, R. ; Clissold, L. ; Trick, M. ; Baker, D. ; Long, Y. ; Meng, J. ; Wang, X. ; Liu, S. / Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing. In: Nature Biotechnology. 2011 ; Vol. 29, No. 8. pp. 762-766.

Bibtex - Download

@article{d6aeb056a4574bc1a6d42465351d1456,
title = "Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing",
abstract = "Polyploidy complicates genomics-based breeding of many crops, including wheat, potato, cotton, oat and sugarcane. To address this challenge, we sequenced leaf transcriptomes across a mapping population of the polyploid crop oilseed rape (Brassica napus) and representative ancestors of the parents of the population. Analysis of sequence variation and transcript abundance enabled us to construct twin single nucleotide polymorphism linkage maps of B. napus, comprising 23,037 markers. We used these to align the B. napus genome with that of a related species, Arabidopsis thaliana, and to genome sequence assemblies of its progenitor species, Brassica rapa and Brassica oleracea. We also developed methods to detect genome rearrangements and track inheritance of genomic segments, including the outcome of an interspecific cross. By revealing the genetic consequences of breeding, cost-effective, high-resolution dissection of crop genomes by transcriptome sequencing will increase the efficiency of predictive breeding even in the absence of a complete genome sequence.",
author = "I. Bancroft and C. Morgan and F. Fraser and J. Higgins and R. Wells and L. Clissold and M. Trick and D. Baker and Y. Long and J. Meng and X. Wang and S. Liu",
year = "2011",
month = aug,
day = "1",
doi = "10.1038/nbt.1926",
language = "English",
volume = "29",
pages = "762--766",
journal = "Nature Biotechnology",
issn = "1087-0156",
publisher = "Nature Publishing Group",
number = "8",

}

RIS (suitable for import to EndNote) - Download

TY - JOUR

T1 - Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing

AU - Bancroft, I.

AU - Morgan, C.

AU - Fraser, F.

AU - Higgins, J.

AU - Wells, R.

AU - Clissold, L.

AU - Trick, M.

AU - Baker, D.

AU - Long, Y.

AU - Meng, J.

AU - Wang, X.

AU - Liu, S.

PY - 2011/8/1

Y1 - 2011/8/1

N2 - Polyploidy complicates genomics-based breeding of many crops, including wheat, potato, cotton, oat and sugarcane. To address this challenge, we sequenced leaf transcriptomes across a mapping population of the polyploid crop oilseed rape (Brassica napus) and representative ancestors of the parents of the population. Analysis of sequence variation and transcript abundance enabled us to construct twin single nucleotide polymorphism linkage maps of B. napus, comprising 23,037 markers. We used these to align the B. napus genome with that of a related species, Arabidopsis thaliana, and to genome sequence assemblies of its progenitor species, Brassica rapa and Brassica oleracea. We also developed methods to detect genome rearrangements and track inheritance of genomic segments, including the outcome of an interspecific cross. By revealing the genetic consequences of breeding, cost-effective, high-resolution dissection of crop genomes by transcriptome sequencing will increase the efficiency of predictive breeding even in the absence of a complete genome sequence.

AB - Polyploidy complicates genomics-based breeding of many crops, including wheat, potato, cotton, oat and sugarcane. To address this challenge, we sequenced leaf transcriptomes across a mapping population of the polyploid crop oilseed rape (Brassica napus) and representative ancestors of the parents of the population. Analysis of sequence variation and transcript abundance enabled us to construct twin single nucleotide polymorphism linkage maps of B. napus, comprising 23,037 markers. We used these to align the B. napus genome with that of a related species, Arabidopsis thaliana, and to genome sequence assemblies of its progenitor species, Brassica rapa and Brassica oleracea. We also developed methods to detect genome rearrangements and track inheritance of genomic segments, including the outcome of an interspecific cross. By revealing the genetic consequences of breeding, cost-effective, high-resolution dissection of crop genomes by transcriptome sequencing will increase the efficiency of predictive breeding even in the absence of a complete genome sequence.

UR - http://www.scopus.com/inward/record.url?scp=79961199174&partnerID=8YFLogxK

U2 - 10.1038/nbt.1926

DO - 10.1038/nbt.1926

M3 - Article

AN - SCOPUS:79961199174

VL - 29

SP - 762

EP - 766

JO - Nature Biotechnology

JF - Nature Biotechnology

SN - 1087-0156

IS - 8

ER -