EchoBASE: an integrated post-genomic database for Escherichia coli

R V Misra; R S P Horler; W Reindl; I I Goryanin; G H Thomas

doi:10.1093/nar/gki028

EchoBASE: an integrated post-genomic database for Escherichia coli

R V Misra, R S P Horler, W Reindl, I I Goryanin, G H Thomas

Biology

Research output: Contribution to journal › Article › peer-review

Abstract

EchoBASE (http://www.ecoli-york.org) is a relational database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. Its aim is to collate information from a wide range of sources to provide clues to the functions of the approximately 1500 gene products that have no confirmed cellular function. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products. Experiments that can be held within EchoBASE include proteomics studies, microarray data, protein-protein interaction data, structural data and bioinformatics studies. EchoBASE also contains annotated information on 'orphan' enzyme activities from this microbe to aid characterization of the proteins that catalyse these elusive biochemical reactions.

Original language	English
Pages (from-to)	D329-D333
Number of pages	5
Journal	Nucleic Acids Research
Volume	33
DOIs	https://doi.org/10.1093/nar/gki028
Publication status	Published - 1 Jan 2005

Keywords

SEQUENCE
K-12
PREDICTION
O157-H7

Access to Document

10.1093/nar/gki028

Cite this

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abstract = "EchoBASE (http://www.ecoli-york.org) is a relational database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. Its aim is to collate information from a wide range of sources to provide clues to the functions of the approximately 1500 gene products that have no confirmed cellular function. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products. Experiments that can be held within EchoBASE include proteomics studies, microarray data, protein-protein interaction data, structural data and bioinformatics studies. EchoBASE also contains annotated information on 'orphan' enzyme activities from this microbe to aid characterization of the proteins that catalyse these elusive biochemical reactions.",

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T1 - EchoBASE: an integrated post-genomic database for Escherichia coli

AU - Misra, R V

AU - Horler, R S P

AU - Reindl, W

AU - Goryanin, I I

AU - Thomas, G H

PY - 2005/1/1

Y1 - 2005/1/1

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AB - EchoBASE (http://www.ecoli-york.org) is a relational database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. Its aim is to collate information from a wide range of sources to provide clues to the functions of the approximately 1500 gene products that have no confirmed cellular function. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products. Experiments that can be held within EchoBASE include proteomics studies, microarray data, protein-protein interaction data, structural data and bioinformatics studies. EchoBASE also contains annotated information on 'orphan' enzyme activities from this microbe to aid characterization of the proteins that catalyse these elusive biochemical reactions.

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KW - PREDICTION

KW - O157-H7

U2 - 10.1093/nar/gki028

DO - 10.1093/nar/gki028

M3 - Article

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JO - Nucleic Acids Research

JF - Nucleic Acids Research

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