Extended survival of Pleistocene Siberian wolves into the early 20th century on the island of Honshū

Jonas Niemann*, Shyam Gopalakrishnan, Nobuyuki Yamaguchi, Jazmín Ramos-Madrigal, Nathan Wales, M. Thomas P. Gilbert, Mikkel Holger S. Sinding

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review


The Japanese or Honshū wolf was one the most distinct gray wolf subspecies due to its small stature and endemicity to the islands of Honshū, Shikoku, and Kyūshū. Long revered as a guardian of farmers and travellers, it was persecuted from the 17th century following a rabies epidemic, which led to its extinction in the early 20th century. To better understand its evolutionary history, we sequenced the nuclear genome of a 19th century Honshū wolf specimen to an average depth of coverage of 3.7✕. We find Honshū wolves were closely related to a lineage of Siberian wolves that were previously believed to have gone extinct in the Late Pleistocene, thereby extending the survival of this ancient lineage until the early 20th century. We also detected significant gene flow between Japanese dogs and the Honshū wolf, corroborating previous reports on Honshū wolf dog interbreeding.

Original languageEnglish
Article number101904
Number of pages8
Issue number1
Early online date7 Dec 2020
Publication statusPublished - 22 Jan 2021

Bibliographical note

©2020 The Author(s).


  • Biological Sciences
  • Evolutionary Biology
  • Genetics
  • Phylogenetics

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