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Linkage Mapping of Stem Saccharification Digestibility in Rice

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Linkage Mapping of Stem Saccharification Digestibility in Rice. / Liu, Bohan; Gómez, Leonardo D; Hua, Cangmei; Sun, Lili; Ali, Imran; Huang, Linli; Yu, Chunyan; Simister, Rachael; Steele-King, Clare; Gan, Yinbo; McQueen-Mason, Simon J.

In: PLoS ONE, Vol. 11, No. 7, e0159117, 12.07.2016.

Research output: Contribution to journalArticlepeer-review

Harvard

Liu, B, Gómez, LD, Hua, C, Sun, L, Ali, I, Huang, L, Yu, C, Simister, R, Steele-King, C, Gan, Y & McQueen-Mason, SJ 2016, 'Linkage Mapping of Stem Saccharification Digestibility in Rice', PLoS ONE, vol. 11, no. 7, e0159117. https://doi.org/10.1371/journal.pone.0159117

APA

Liu, B., Gómez, L. D., Hua, C., Sun, L., Ali, I., Huang, L., Yu, C., Simister, R., Steele-King, C., Gan, Y., & McQueen-Mason, S. J. (2016). Linkage Mapping of Stem Saccharification Digestibility in Rice. PLoS ONE, 11(7), [e0159117]. https://doi.org/10.1371/journal.pone.0159117

Vancouver

Liu B, Gómez LD, Hua C, Sun L, Ali I, Huang L et al. Linkage Mapping of Stem Saccharification Digestibility in Rice. PLoS ONE. 2016 Jul 12;11(7). e0159117. https://doi.org/10.1371/journal.pone.0159117

Author

Liu, Bohan ; Gómez, Leonardo D ; Hua, Cangmei ; Sun, Lili ; Ali, Imran ; Huang, Linli ; Yu, Chunyan ; Simister, Rachael ; Steele-King, Clare ; Gan, Yinbo ; McQueen-Mason, Simon J. / Linkage Mapping of Stem Saccharification Digestibility in Rice. In: PLoS ONE. 2016 ; Vol. 11, No. 7.

Bibtex - Download

@article{8eab9c61482b4be2894c2c36f5cb4386,
title = "Linkage Mapping of Stem Saccharification Digestibility in Rice",
abstract = "Rice is the staple food of almost half of the world population, and in excess 90% of it is grown and consumed in Asia, but the disposal of rice straw poses a problem for farmers, who often burn it in the fields, causing health and environmental problems. However, with increased focus on the development of sustainable biofuel production, rice straw has been recognized as a potential feedstock for non-food derived biofuel production. Currently, the commercial realization of rice as a biofuel feedstock is constrained by the high cost of industrial saccharification processes needed to release sugar for fermentation. This study is focused on the alteration of lignin content, and cell wall chemotypes and structures, and their effects on the saccharification potential of rice lignocellulosic biomass. A recombinant inbred lines (RILs) population derived from a cross between the lowland rice variety IR1552 and the upland rice variety Azucena with 271 molecular markers for quantitative trait SNP (QTS) analyses was used. After association analysis of 271 markers for saccharification potential, 1 locus and 4 pairs of epistatic loci were found to contribute to the enzymatic digestibility phenotype, and an inverse relationship between reducing sugar and lignin content in these recombinant inbred lines was identified. As a result of QTS analyses, several cell-wall associated candidate genes are proposed that may be useful for marker-assisted breeding and may aid breeders to produce potential high saccharification rice varieties.",
author = "Bohan Liu and G{\'o}mez, {Leonardo D} and Cangmei Hua and Lili Sun and Imran Ali and Linli Huang and Chunyan Yu and Rachael Simister and Clare Steele-King and Yinbo Gan and McQueen-Mason, {Simon J}",
note = "{\textcopyright} 2016, Liu et al.",
year = "2016",
month = jul,
day = "12",
doi = "10.1371/journal.pone.0159117",
language = "English",
volume = "11",
journal = "PLoS ONE",
issn = "1932-6203",
publisher = "Public Library of Science",
number = "7",

}

RIS (suitable for import to EndNote) - Download

TY - JOUR

T1 - Linkage Mapping of Stem Saccharification Digestibility in Rice

AU - Liu, Bohan

AU - Gómez, Leonardo D

AU - Hua, Cangmei

AU - Sun, Lili

AU - Ali, Imran

AU - Huang, Linli

AU - Yu, Chunyan

AU - Simister, Rachael

AU - Steele-King, Clare

AU - Gan, Yinbo

AU - McQueen-Mason, Simon J

N1 - © 2016, Liu et al.

PY - 2016/7/12

Y1 - 2016/7/12

N2 - Rice is the staple food of almost half of the world population, and in excess 90% of it is grown and consumed in Asia, but the disposal of rice straw poses a problem for farmers, who often burn it in the fields, causing health and environmental problems. However, with increased focus on the development of sustainable biofuel production, rice straw has been recognized as a potential feedstock for non-food derived biofuel production. Currently, the commercial realization of rice as a biofuel feedstock is constrained by the high cost of industrial saccharification processes needed to release sugar for fermentation. This study is focused on the alteration of lignin content, and cell wall chemotypes and structures, and their effects on the saccharification potential of rice lignocellulosic biomass. A recombinant inbred lines (RILs) population derived from a cross between the lowland rice variety IR1552 and the upland rice variety Azucena with 271 molecular markers for quantitative trait SNP (QTS) analyses was used. After association analysis of 271 markers for saccharification potential, 1 locus and 4 pairs of epistatic loci were found to contribute to the enzymatic digestibility phenotype, and an inverse relationship between reducing sugar and lignin content in these recombinant inbred lines was identified. As a result of QTS analyses, several cell-wall associated candidate genes are proposed that may be useful for marker-assisted breeding and may aid breeders to produce potential high saccharification rice varieties.

AB - Rice is the staple food of almost half of the world population, and in excess 90% of it is grown and consumed in Asia, but the disposal of rice straw poses a problem for farmers, who often burn it in the fields, causing health and environmental problems. However, with increased focus on the development of sustainable biofuel production, rice straw has been recognized as a potential feedstock for non-food derived biofuel production. Currently, the commercial realization of rice as a biofuel feedstock is constrained by the high cost of industrial saccharification processes needed to release sugar for fermentation. This study is focused on the alteration of lignin content, and cell wall chemotypes and structures, and their effects on the saccharification potential of rice lignocellulosic biomass. A recombinant inbred lines (RILs) population derived from a cross between the lowland rice variety IR1552 and the upland rice variety Azucena with 271 molecular markers for quantitative trait SNP (QTS) analyses was used. After association analysis of 271 markers for saccharification potential, 1 locus and 4 pairs of epistatic loci were found to contribute to the enzymatic digestibility phenotype, and an inverse relationship between reducing sugar and lignin content in these recombinant inbred lines was identified. As a result of QTS analyses, several cell-wall associated candidate genes are proposed that may be useful for marker-assisted breeding and may aid breeders to produce potential high saccharification rice varieties.

U2 - 10.1371/journal.pone.0159117

DO - 10.1371/journal.pone.0159117

M3 - Article

C2 - 27415441

VL - 11

JO - PLoS ONE

JF - PLoS ONE

SN - 1932-6203

IS - 7

M1 - e0159117

ER -