The York Research Database

Genomic signatures of vegetable and oilseed allopolyploid Brassica juncea and genetic loci controlling the accumulation of glucosinolates

Bancroft, I. & He, Z., 15 Aug 2021, (Accepted/In press)

Article in Plant biotechnology journal

Validation of a novel associative transcriptomics pipeline in Brassica oleracea: Identifying candidates for vernalisation response

Woodhouse, S., He, Z., Woolfenden, H., Steuernagel, B., Haerty, W., Bancroft, I., Irwin, J. A., Morris, R. J. & Wells, R., 13 Jul 2021

Article in BMC Genomics

Genome structural evolution in Brassica crops

He, Z., Ji, R., Havlickova, L., Wang, L., Li, Y., Lee, H. T., Song, J., Koh, C., Yang, J., Zhang, M., Parkin, I. A. P., Wang, X., Edwards, D., King, G. J., Zou, J., Liu, K., Snowdon, R. J., Banga, S. S., Machackova, I. & Bancroft, I., 27 May 2021

Article in Nature Plants

A high-contiguity Brassica nigra genome localizes active centromeres and defines the ancestral Brassica genome

Sampath, P., Koh, C. S., Jin, L., Buchwaldt, M., Higgins, E. E., Zheng, C., Sankoff, D., Robinson, S. J., Kagale, S., Navabi, Z-K., Tang, L., Horner, K. N., He, Z., Bancroft, I., Chalhoub, B., Sharpe, A. G. & Parkin, I. A. P., 10 Aug 2020

Article in Nature Plants

Validation of an Associative Transcriptomics platform in the polyploid crop species Brassica juncea by dissection of the genetic architecture of agronomic and quality traits

Harper, A. L., He, Z., Langer, S., Havlickova, L., Wang, L., Fellgett, A., Gupta, V., Pradhan, A. K. & Bancroft, I., 22 Jul 2020, (E-pub ahead of print)

Article in The Plant journal

Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C

Mifsud, B., Tavares-Cadete, F., Young, A. N., Sugar, R., Schoenfelder, S., Ferreira, L., Wingett, S. W., Andrews, S., Grey, W., Ewels, P. A., Herman, B., Happe, S., Higgs, A., Leproust, E., Follows, G. A., Fraser, P., Luscombe, N. M. & Osborne, C. S., 4 May 2015

Article in Nature genetics

The genomic and phenotypic diversity of Schizosaccharomyces pombe

Jeffares, D. C., Rallis, C., Rieux, A., Speed, D., Převorovský, M., Mourier, T., Marsellach, F. X., Iqbal, Z., Lau, W., Cheng, T. M. K., Pracana, R., Mülleder, M., Lawson, J. L. D., Chessel, A., Bala, S., Hellenthal, G., O'Fallon, B., Keane, T., Simpson, J. T., Bischof, L. & 22 others, Tomiczek, B., Bitton, D. A., Sideri, T., Codlin, S., Hellberg, J. E. E. U., Van Trigt, L., Jeffery, L., Li, J. J., Atkinson, S., Thodberg, M., Febrer, M., McLay, K., Drou, N., Brown, W., Hayles, J., Salas, R. E. C., Ralser, M., Maniatis, N., Balding, D. J., Balloux, F., Durbin, R. & Bähler, J., 9 Feb 2015

Article in Nature genetics

Genome-wide association study identifies multiple susceptibility loci for diffuse large B cell lymphoma

Cerhan, J. R., Berndt, S. I., Vijai, J., Ghesquières, H., McKay, J., Wang, S. S., Wang, Z., Yeager, M., Conde, L., de Bakker, P. I. W., Nieters, A., Cox, D., Burdett, L., Monnereau, A., Flowers, C. R., De Roos, A. J., Brooks-Wilson, A. R., Lan, Q., Severi, G., Melbye, M. & 102 others, Gu, J., Jackson, R. D., Kane, E., Teras, L. R., Purdue, M. P., Vajdic, C. M., Spinelli, J. J., Giles, G. G., Albanes, D., Kelly, R. S., Zucca, M., Bertrand, K. A., Zeleniuch-Jacquotte, A., Lawrence, C., Hutchinson, A., Zhi, D., Habermann, T. M., Link, B. K., Novak, A. J., Dogan, A., Asmann, Y. W., Liebow, M., Thompson, C. A., Ansell, S. M., Witzig, T. E., Weiner, G. J., Veron, A. S., Zelenika, D., Tilly, H., Haioun, C., Molina, T. J., Hjalgrim, H., Glimelius, B., Adami, H-O., Bracci, P. M., Riby, J., Smith, M. T., Holly, E. A., Cozen, W., Hartge, P., Morton, L. M., Severson, R. K., Tinker, L. F., North, K. E., Becker, N., Benavente, Y., Boffetta, P., Brennan, P., Foretova, L., Maynadie, M., Staines, A., Lightfoot, T., Crouch, S., Smith, A. G., Roman, E., Diver, W. R., Offit, K., Zelenetz, A., Klein, R. J., Villano, D. J., Zheng, T., Zhang, Y., Holford, T. R., Kricker, A., Turner, J., Southey, M. C., Clavel, J., Virtamo, J., Weinstein, S., Riboli, E., Vineis, P., Kaaks, R., Trichopoulos, D., Vermeulen, R. C. H., Boeing, H., Tjonneland, A., Angelucci, E., Di Lollo, S., Rais, M., Birmann, B. M., Laden, F., Giovannucci, E., Kraft, P., Huang, J., Ma, B., Ye, Y., Chiu, B. C. H., Sampson, J., Liang, L., Park, J-H., Chung, C. C., Weisenburger, D. D., Chatterjee, N., Fraumeni, J. F., Slager, S. L., Wu, X., de Sanjose, S., Smedby, K. E., Salles, G., Skibola, C. F., Rothman, N. & Chanock, S. J., Nov 2014

Article in Nature genetics

Pathogens and host immunity in the ancient human oral cavity

Warinner, C., Rodrigues, J. F. M., Vyas, R., Trachsel, C., Shved, N., Grossmann, J., Radini, A., Hancock, Y., Tito, R. Y., Fiddyment, S., Speller, C., Hendy, J., Charlton, S., Luder, H. U., Salazar-García, D. C., Eppler, E., Seiler, R., Hansen, L. H., Castruita, J. A. S., Barkow-Oesterreicher, S. & 12 others, Teoh, K. Y., Kelstrup, C. D., Olsen, J. V., Nanni, P., Kawai, T., Willerslev, E., von Mering, C., Lewis, C. M., Collins, M. J., Gilbert, M. T. P., Rühli, F. & Cappellini, E., Apr 2014

Article in Nature genetics