Search research publications and outputs

  1. 2022
  2. Application of stranded pelagic sargassum biomass as compost for seedling production in the context of mangrove restoration

    Trench, C., Thomas, S-L., Thorney, D., Maddix, G-M., Francis, P., Small, H., Machado, C. B., Webber, D., Tonon, T. & Webber, M., 6 Sep 2022

    Article in Frontiers in Environmental Science

  3. Effects of CRISPR/Cas9 generated drooping leaf (dl) alleles on midrib and carpel formations in Oryza sativa Nipponbare

    Janthabut, T., Tristianto, C., Sakulkoo, J., Sunvittayakul, P., Suttangkakul, A., Gomez, L. D., Vuttipongchaikij, S. & Sakulsingharoj, C., 22 Aug 2022

    Article in Planta

  4. Allele-aware chromosome-level genome assembly of Artemisia annua reveals the correlation between ADS expansion and artemisinin yield

    Liao, B., Shen, X., Xiang, L., Guo, S., Chen, S., Meng, Y., Liang, Y., Ding, D., Bai, J., Zhang, D., Czechowski, T., Li, Y., Yao, H., Ma, T., Howard, C., Sun, C., Liu, H., Liu, J., Pei, J., Gao, J., & 10 othersWang, J., Qiu, X., Huang, Z., Li, H., Yuan, L., Wei, J., Graham, I. A., Xu, J., Zhang, B. & Chen, S., 4 Aug 2022

    Article in Molecular plant

  5. Flexible and digestible wood caused by viral-induced alteration of cell wall composition

    Allen, H., Zeef, L., Morreel, K., Goeminne, G., Kumar, M., Gomez, L. D., Dean, A. P., Eckmann, A., Casiraghi, C., McQueen-Mason, S. J., Boerjan, W. & Turner, S. R., 17 Jun 2022, (E-pub ahead of print)

    Article in Current Biology

  6. Biochemical and Elemental Composition of Pelagic Sargassum Biomass Harvested across the Caribbean

    Tonon, T., Botelho MacHado, C., Webber, M., Webber, D., Smith, J., Pilsbury, A., Ciceron, F., Herrera-Rodriguez, L., Jimenez, E. M., Suarez, J. V., Ahearn, M., Gonzalez, F. & Allen, M., 11 Mar 2022

    Article in Phycology

  7. 2021
  8. Impact on Arabidopsis growth and stress resistance of depleting the Maf1 repressor of RNA polymerase III

    Blayney, J., Geary, J., Chrisp, R., Violet, J., Barratt, L., Tavukcu, L., Paine, K., Graham, I. A., Denby, K., White, B. & Vaistij, F. E., 15 Dec 2021, (Accepted/In press)

    Article in Gene

  9. Characterisation of the enzyme transport path between shipworms and their bacterial symbionts

    Pesante, G., Sabbadin, F., Elias, L., Steele-King, C., Shipway, J. R., Dowle, A., Li, Y., Busse-Wicher, M., Dupree, P., Besser, K., Cragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 1 Nov 2021

    Article in BMC Biology

  10. A model investigation of the impact of lower hybrid wave scattering angle on current drive profile in EAST and Alcator C-Mod

    Baek, S. G., Biswas, B., Wallace, G. M., Bonoli, P. T., Ding, B. J., Li, M. H., Li, Y. C., Wang, Y. F., Wang, M., Wu, C. B., Yan, G. H., Chen, J., Zhai, X., Garofalo, A. M., Choi, W., Poli, F. & Shiraiwa, S., 20 Sep 2021

    Article in Nuclear Fusion

  11. Secreted pectin monooxygenases drive plant infection by pathogenic oomycetes

    Sabbadin, F., Urresti, S., Henrissat, B., Avrova, A. O., Welsh, L. R. J., Lindley, P., Csukai, M., Squires, J. N., Walton, P. H., Davies, G. J., Bruce, N. C., Whisson, S. C. & McQueen Mason, S. J., 13 Aug 2021, (E-pub ahead of print)

    Article in Science

  12. Genome structural evolution in Brassica crops

    He, Z., Ji, R., Havlickova, L., Wang, L., Li, Y., Lee, H. T., Song, J., Koh, C., Yang, J., Zhang, M., Parkin, I. A. P., Wang, X., Edwards, D., King, G. J., Zou, J., Liu, K., Snowdon, R. J., Banga, S. S., Machackova, I. & Bancroft, I., 27 May 2021

    Article in Nature Plants

  13. A chromosome-level Amaranthus cruentus genome assembly highlights gene family evolution and biosynthetic gene clusters that may underpin the nutritional value of this traditional crop

    Ma, X., Vaistij, F. E., Li, Y., Jansen van Rensburg, W. S., Harvey, S. E., Bairu, M. W., Venter, S. L., Mavengahama, S., Ning, Z., Graham, I. A., Van Deynze, A., Van de Peer, Y. & Denby, K., 7 May 2021, (E-pub ahead of print)

    Article in The Plant journal

  14. A novel protein from Ectocarpus sp. improves salinity and high temperature stress tolerance in Arabidopsis thaliana

    Rathor, P., Borza, T., Stone, S., Tonon, T., Yurgel, S., Potin, P. & Prithiviraj, B., 13 Feb 2021, (Accepted/In press)

    Article in International Journal of Molecular Sciences

  15. Design of experiments driven optimization of alkaline pretreatment and saccharification for sugarcane bagasse

    Mota, T. R., Oliveira, D. M., Simister, R., Whitehead, C. B., Lanot, A., Dos Santos, W. D., Rezende, C. A., McQueen Mason, S. J. & Gomez, L. D., 1 Feb 2021

    Article in BIORESOURCE TECHNOLOGY

  16. Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp

    Farhat, S., Le, P., Kayal, E., Noel, B., Bigeard, E., Corre, E., Maumus, F., Florent, I., Alberti, A., Aury, J-M., Barbeyron, T., Cai, R., Da Silva, C., Istace, B., Labadie, K., Marie, D., Mercier, J., Rukwavu, T., Szymczak, J., Tonon, T., & 7 othersAlves-de-Souza, C., Rouzé, P., Van de Peer, Y., Wincker, P., Rombauts, S., Porcel, B. M. & Guillou, L., 6 Jan 2021

    Article in BMC Biology

  17. 2020
  18. Selection of a subspecies-specific diterpene gene cluster implicated in rice disease resistance

    Zhan, C., Lei, L., Liu, Z., Zhou, S., Yang, C., Zhu, X., Guo, H., Zhang, F., Peng, M., Zhang, M., Li, Y., Yang, Z., Sun, Y., Shi, Y., Li, K., Liu, L., Shen, S., Wang, X., Li, Y., Czechowski, T., & 9 othersHasegawa, M., Graham, I. A., Tohge, T., Qu, L., Liu, X., Fernie, A. R., Chen, L-L., Yuan, M. & Luo, J., 7 Dec 2020

    Article in Nature Plants

  19. Overcoming the trade-off between grain weight and number in wheat by the ectopic expression of expansin in developing seeds leads to increased yield potential

    Calderini, D. F., Castillo, F. M. C., Arenas-M, A., Molero, G., Reynolds, M. P., Craze, M., Bowden, S., Milner, M. J., Wallington, E. J., Dowle, A., Gomez, L. D. & McQueen Mason, S. J., 4 Dec 2020, (E-pub ahead of print)

    Article in The New phytologist

  20. Low mannitol concentrations in Arabidopsis thaliana expressing Ectocarpus genes improve salt tolerance

    Rathor, P., Borza, T., Liu, Y., Qin, Y., Stone, S., Zhang, J., Hui, J. P. M., Berrue, F., Groisillier, A., Tonon, T., Yurgel, S., Potin, P. & Prithiviraj, B., 7 Nov 2020

    Article in Plants

  21. Association mapping identifies quantitative trait loci (QTL) for digestibility in rice straw

    Nguyen, D. T., Gomez, L. D., Harper, A. L., Halpin, C., Waugh, R., Simister, R., Whitehead, C., Oakley, H., Nguyen, H. T., Nguyen, T. V., Duong, T. X. & McQueen Mason, S. J., 8 Oct 2020

    Article in Biotechnology for biofuels

  22. PsAA9A, a C1-specific AA9 lytic polysaccharide monooxigenase from the white-rot basidiomycete Pycnoporus sanguineus

    Garrido, M. M., Landon, M., Sabbadin, F., Valacco, M. P., Couto, A., Bruce, N. C., Wirth, S. A. & Campos, E., 23 Sep 2020

    Article in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

  23. Cell wall remodeling under salt stress: Insights into changes in polysaccharides, feruloylation, lignification, and phenolic metabolism in maize

    Oliveira, D. M., Mota, T. R., Salatta, F. V., Sinzker, R. C., Končitíková, R., Kopečný, D., Simister, R., Silva, M., Goeminne, G., Morreel, K., Rencoret, J., Gutiérrez, A., Tryfona, T., Marchiosi, R., Dupree, P., Del Río, J. C., Boerjan, W., McQueen-Mason, S. J., Gomez, L. D., Ferrarese-Filho, O., & 1 othersDos Santos, W. D., 20 Aug 2020

    Article in Plant, Cell and Environment

  24. Isoprostanoid profiling of marine microalgae

    Vigor, C., Oger, C., Reversat, G., Rocher, A., Zhou, B., Linares-Maurizi, A., Guy, A., Bultel-Ponce, V., Galano, J-M., Vercauteren, J., Durand, T., Potin, P., Tonon, T. & Leblanc, C., 18 Jul 2020

    Article in Biomolecules

  25. Characterization of redox sensitive algal mannitol-1-phosphatases of the haloacid dehalogenase superfamily of proteins

    Le Strat, Y., Tonon, T., Le Blanc, C. & Groisillier, A., 1 Jul 2020, (Accepted/In press)

    Article in bioRxiv

  26. Global Transcriptomic Responses of Roseithermus sacchariphilus Strain RA in Media Supplemented with Beechwood Xylan

    Liew, K. J., Bruce, N. C., Sani, R. K., Chong, C. S., Yaakop, A. S., Shamsir, M. S. & Goh, K. M., 29 Jun 2020

    Article in Microorganisms

  27. Arabidopsis XTH4 and XTH9 contribute to wood cell expansion and secondary wall formation

    Kushwah, S., Banasiak, A., Nishikubo, N., Derba-Maceluch, M., Majda, M., Endo, S., Kumar, V., Gomez, L. D., Gorzsas, A., McQueen Mason, S. J., Braam, J., Sundberg, B. & Mellerowicza, E. J., Apr 2020

    Article in Plant Physiology

  28. The genome of Ectocarpus subulatus – a highly stress-tolerant brown alga

    Dittami, S. M., Corre, E., Brillet-Guéguen, L., Lipinska, A. P., Pontoizeau, N., Aite, M., Avia, K., Caron, C., Cho, C. H., Collén, J., Cormier, A., Delage, L., Doubleau, S., Frioux, C., Gobet, A., González-Navarrete, I., Groisillier, A., Hervé, C., Jollivet, D., KleinJan, H., & 16 othersLeblanc, C., Liu, X., Marie, D., Markov, G. V., Minoche, A. E., Monsoor, M., Pericard, P., Perrineau, M-M., Peters, A. F., Siegel, A., Siméon, A., Trottier, C., Yoon, H. S., Himmelbauer, H., Boyen, C. & Tonon, T., 11 Jan 2020, (E-pub ahead of print)

    Article in Marine Genomics

  29. 2019
  30. Robertkochia solimangrovi sp. nov., isolated from mangrove soil, and emended description of the genus Robertkochia

    Quan Lam, M., Vodovnik, M., Zorec, M., Chen, S. J., Mau Goh, K., Yahya, A., Salleh, M. M., Ibrahim, Z., Tokiman, L., McQueen Mason, S. J., Bruce, N. C. & Chong, C. S., 17 Dec 2019

    Article in International journal of systematic and evolutionary microbiology

  31. Designing xylan for improved sustainable biofuel production

    Oliveira, D. M., Mota, T. R., Salatta, F. V., Marchiosi, R., Gomez, L. D., McQueen-Mason, S. J., Ferrarese-Filho, O. & Dos Santos, W. D., 6 Nov 2019

    Article in Plant biotechnology journal

  32. Industry-Informed Workshops to Develop Graduate Skill Sets in the Circular Economy Using Systems Thinking

    Summerton, L., Clark, J. H., Hurst, G. A., Ball, P. D., Rylott, E. L., Carslaw, N., Creasey, J., Murray, J., Whitford, J., Dobson, B., Sneddon, H. F., Ross, J., Metcalf, P. & McElroy, C. R., 1 Nov 2019

    Article in JOURNAL OF CHEMICAL EDUCATION

  33. Mining the biomass deconstructing capabilities of rice yellow stem borer symbionts

    Singh, R., Bennett, J. P., Gupta, M., Sharma, M., Eqbal, D., Alessi, A., Dowle, A., McQueen Mason, S. J., Bruce, N. C. & Yazdani, S. S., 24 Oct 2019, (Accepted/In press)

    Article in Biotechnology for biofuels

  34. Anaerobic digestion of Crassulacean Acid Metabolism plants: Exploring alternative feedstocks for semi-arid lands

    Lueangwattanapong, K., Ammam, F., Mason, P. M., Whitehead, C., McQueen-Mason, S. J., Gomez, L. D., Smith, J. A. C. & Thompson, I. P., 14 Oct 2019, (E-pub ahead of print)

    Article in BIORESOURCE TECHNOLOGY

  35. Insights into microbial community structure and diversity in oil palm waste compost

    Khalid, N. A., Rajandas, H., Parimannan, S., Croft, L. J., Loke, S., Chong, C. S., Bruce, N. C. & Yahya, A., 1 Oct 2019

    Article in 3 Biotech

  36. cis-12-oxo-phytodienoic acid represses Arabidopsis thaliana seed germination in shade light conditions

    Barros Galvão, T., Dave, A., Cole, A. F., Harvey, D., Langer, S., Larson, TR., Vaistij, F. E. & Graham, I. A., 20 Jul 2019, (E-pub ahead of print)

    Article in Journal of Experimental Botany

  37. Study of backward terahertz radiation from intense picosecond laser-solid interactions using a multichannel calorimeter system

    Liu, H., Liao, G. Q., Zhang, Y. H., Zhu, B. J., Zhang, Z., Li, Y. T., Scott, G. G., Rusby, D., Armstrong, C., Zemaityte, E., Bradford, P., Woolsey, N., Huggard, P., McKenna, P. & Neely, D., 22 Jan 2019, (E-pub ahead of print)

    Article in High Power Laser Science and Engineering

  38. 2018
  39. Low-oxygen response is triggered by an ATP-dependent shift in oleoyl-CoA in Arabidopsis

    Schmidt, R., Fulda, M., Paul, M., Anders, M., Plum, F., Weits, D., Kosmacz, M., Larson, T., Graham, I. A., Beemster, G., Licausi, F., Gelgenberger, P., Schippers, J. & van Dongen, J. T., 18 Dec 2018

    Article in Proceedings of the National Academy of Sciences of the United States of America

  40. Hemocyanin facilitates lignocellulose digestion by wood-boring marine crustaceans

    Besser, K., Malyon, G. P., Eborall, W. S., Paro da Cunha, G., Goncalves Filgueiras, J., Dowle, A., Cruz Garcia, L., Page, S. J., Dupree, R., Kern, M. F., Gomez, L. D., Li, Y., Elias, L., Sabbadin, F., Mohamad, S. E., Pesante, G., Steele-King, C. G., Ribeiro de Azevedo, E., Polikarpov, I., Dupree, P., & 3 othersCragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 3 Dec 2018

    Article in Nature Communications

  41. Isoprostanoids quantitative profiling of marine red and brown macroalgae

    Vigor, C., Reversat, G., Rocher, A., Oger, C., Galano, J-M., Vercauteren, J., Durand, T., Tonon, T., Leblanc, C. & Potin, P., 1 Dec 2018

    Article in Food Chemistry

  42. Plant–Rhizobium symbiosis, seed nutraceuticals, and waste quality for energy production of Vicia faba L. as affected by crop management

    Amalfitano, C., Gomez, L. D., Frendo, P., De Pascale, S., Pepe, O., Simister, R., Ventorino, V., Agrelli, D., Borrelli, C., McQueen-Mason, S. J. & Caruso, G., 1 Dec 2018

    Article in Chemical and Biological Technologies in Agriculture

  43. Functional and informatics analysis enables glycosyltransferase activity prediction

    Yang, M., Fehl, C., Lees, K. V., Lim, E-K., Offen, W. A., Davies, G. J., Bowles, D. J., Davidson, M. G., Roberts, S. J. & Davis, B. G., 12 Nov 2018, (E-pub ahead of print)

    Article in NATURE CHEMICAL BIOLOGY

  44. Response of cell wall composition and RNA-seq transcriptome to methyl-jasmonate in Brachypodium distachyon callus

    Hyde, L. S., Pellny, T. K., Freeman, J., Michaelson, L. V., Simister, R., McQueen Mason, S. J. & Mitchell, R. A. C., 1 Nov 2018

    Article in Planta

  45. The opium poppy genome and morphinan production.

    Guo, L., Winzer, T. H., Yang, X., Li, Y., Ning, Z., He, Z., Teodor, R. I., Lu, Y., Bowser, T., Graham, I. A. & Ye, K., 19 Oct 2018

    Article in Science

  46. A glycosyl transferase family 43 protein involved in xylan biosynthesis is associated with straw digestibility in Brachypodium distachyon

    Whitehead, C., Ostos Garrido, F. J., Reymond, M., Simister, R., Distelfeld, A., Atienza, S. G., Piston, F., Gomez, L. D. & Mcqueen-Mason, S. J., 25 Mar 2018, (E-pub ahead of print)

    Article in The New phytologist

  47. Uncovering the molecular mechanisms of lignocellulose digestion in shipworms

    Sabbadin, F., Pesante, G., Elias, L., Besser, K., Li, Y., Steele-King, C. G., Stark, M., Rathbone, D. A., Dowle, A., Bates, R., Shipway, J. R., Cragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 7 Mar 2018

    Article in Biotechnology for biofuels

  48. 2017
  49. Valorising faba bean residual biomass: Effect of farming system and planting time on the potential for biofuel production

    Gómez, L. D., Amalfitano, C., Andolfi, A., Simister, R., Somma, S., Ercolano, M. R., Borrelli, C., McQueen-Mason, S. J., Frusciante, L., Cuciniello, A. & Caruso, G., 1 Dec 2017

    Article in Biomass & bioenergy

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