Search research publications and outputs

  1. Preprint › Research
  2. Transcriptional Dynamics of the Salicylic Acid Response and its Interplay with the Jasmonic Acid Pathway

    Hickman, R., Pereira Mendes, M., Van Verk, M. C., Van Dijken, A. J. H., Di Sora, J., Denby, K., Pieterse, C. M. J. & Van Wees, S. CM., 24 Aug 2019, bioRxiv, at Cold Spring Harbor Laboratory.

    Research output: Working paperPreprint

  3. Review article › Research › Peer-reviewed
  4. Development and physiology of the brown alga Ectocarpus siliculosus: two centuries of research

    Charrier, B., Coelho, S. M., Le Bail, A., Tonon, T., Michel, G., Potin, P., Kloareg, B., Boyen, C., Peters, A. F. & Cock, J. M., 2008

    Review article in New Phytologist

  5. Lignocellulose degradation mechanisms across the Tree of Life

    Cragg, S. M., Beckham, G. T., Bruce, N. C., Bugg, T. D. H., Distel, D. L., Dupree, P., Etxabe, A. G., Goodell, B. S., Jellison, J., McGeehan, J. E., McQueen-Mason, S. J., Schnorr, K., Walton, P. H., Watts, J. E. M. & Zimmer, M., Dec 2015

    Review article in Current Opinion in Chemical Biology

  6. Plant metabolic gene clusters in the multi-omics era

    Zhan, C., Shen, S., Yang, C., Liu, Z., Fernie, A., Graham, I. A. & Luo, J., 30 Mar 2022, (E-pub ahead of print)

    Review article in TRENDS IN PLANT SCIENCE

  7. Toward systems biology in brown algae to explore acclimation and adaptation to the shore environment

    Tonon, T., Eveillard, D., Prigent, S., Bourdon, J., Potin, P., Boyen, C. & Siegel, A., Dec 2011

    Review article in Omics : a journal of integrative biology

  8. Valorisation strategies for cocoa pod husk and its fractions

    Lu, F., Rodriguez-Garcia, J., Van Damme, I., Westwood, N. J., Shaw, L., Robinson, J. S., Warren, G., Chatzifragkou, A., McQueen Mason, S., Gomez, L., Faas, L., Balcombe, K., Srinivasan, C., Picchioni, F., Hadley, P. & Charalampopoulos, D., 1 Dec 2018

    Review article in Current Opinion in Green and Sustainable Chemistry

  9. Working paper › Research
  10. The genome of Ectocarpus subulatus – a highly stress-tolerant brown alga

    Dittami et al. & Tonon, T., 24 Oct 2019, bioRxiv, at Cold Spring Harbor Laboratory.

    Research output: Working paper

  11. Other chapter contribution › Research
  12. The wound response of tomato plants: analysis of local and long-range signalling events

    Bowles, D. J., 1997, ESSAYS IN BIOCHEMISTRY, VOL 32, 1997. LONDON: Portland Press Ltd., p. 161-169 9 p.

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  13. Conference contribution › Research
  14. Automated enzyme classification by formal concept analysis

    Coste, F., Garet, G., Groisillier, A., Nicolas, J. & Tonon, T., 1 Jan 2014, Formal Concept Analysis - 12th International Conference, ICFCA 2014, Proceedings. Springer-Verlag, p. 235-250 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8478 LNAI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  15. Collisionless shock generation by a high-power laser

    Morita, T., Sakawa, Y., Kuramitsu, Y., Dono, S., Aoki, H., Tanji, H., Kato, T., Li, Y. T., Zhang, Y., Liu, X., Zhong, J. Y., Woolsey, N., Takabe, H. & Zhang, J., 2010, SIXTH INTERNATIONAL CONFERENCE ON INERTIAL FUSION SCIENCES AND APPLICATIONS, PARTS 1-4. BRISTOL: IOP Publishing Ltd., p. - 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  16. Chapter › Research
  17. Ancestral Sequence Reconstruction for Exploring Alkaloid Evolution

    Lichman, B. R., 23 Jun 2022, Catharanthus roseus: Methods and Protocols. Springer, p. 165-179 15 p. (Methods in molecular biology; vol. 2505).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  18. Formal Methods: Use and Relevance for the Development of Safety Critical Systems

    McDermid, J. A. & Bennett, P. A. (ed.), 1993, Safety Aspects of Computer Control. Oxford: Butterworth Heinemann, p. 96-153 58 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  19. Gene Mining for Environmental Studies and Applications: Examples from Marine Organisms

    Dittami, S. M. & Tonon, T., 9 Jun 2014, Outstanding Marine Molecules: Chemistry, Biology, Analysis. Wiley, p. 435-456 22 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  20. Glutathione

    Foyer, C. H., Gomez, L. D. & Van Heerden, P. D., 12 Nov 2007, Antioxidants and Reactive Oxygen Species in Plants. Blackwell Publishing Ltd., p. 1-24 24 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  21. Glycosylation of Secondary Metabolites and Xenobiotics

    Vaistij, F. E., Lim, E-K., Edwards, R. & Bowles, D. J., 2009, PLANT-DERIVED NATURAL PRODUCTS: SYNTHESIS, FUNCTION, AND APPLICATION. Osbourn, A. & Lanzotti, V. (eds.). Springer, p. 209-228

    Research output: Chapter in Book/Report/Conference proceedingChapter

  22. Glycosylation of secondary metabolites and xenobiotics

    Vaistij, F. E., Edwards, R. & Bowles, D. J., 2008, Plant-derived natural products: synthesis, function and application. Lanzotti, V. & Osbourn, A. (eds.). Springer

    Research output: Chapter in Book/Report/Conference proceedingChapter

  23. Glycosyltransferases of Small Molecules: Their Roles in Plant Biology

    Bowles, D. J. & Lim, E-K., 2010, Encyclopedia of Life Sciences (ELS). Wiley

    Research output: Chapter in Book/Report/Conference proceedingChapter

  24. Poster › Research › Peer-reviewed
  25. Brown algal genes impart abiotic stress tolerance in Arabidopsis thaliania

    Rathor et al. , 2018.

    Research output: Contribution to conferencePosterpeer-review

  26. Microalgae Isoprostanoids Profiling: Species Choice and Growing Conditions Impact

    Vigor, C., Reversat, G., Rocher, A., Linares-Maurizi, A., Oger, C., Galano, J-M., Vercauteren, J., Durand, T., Leblanc, C., Potin, P. & Tonon, T., 20 Oct 2019.

    Research output: Contribution to conferencePosterpeer-review

  27. Molecular tools to engineer cyanobacteria for industrial biotechnology

    Madsen et al. , 2017.

    Research output: Contribution to conferencePosterpeer-review

  28. Use of Sargassum compost in soil amelioration for mangrove seedling production

    Webber, M., Trench, C., Maddix, G-M. & Tonon, T., 31 May 2021.

    Research output: Contribution to conferencePosterpeer-review

  29. Paper › Research › Peer-reviewed
  30. Mechanical, chemical, biological: Moving towards closed-loop bio-based recycling in a circular economy of sustainable textiles

    McQueen Mason, S. J., 9 Oct 2021, (Accepted/In press).

    Research output: Contribution to conferencePaperpeer-review

  31. Paper › Research › Not peer-reviewed
  32. Further investigations into post-completion error: the effects of interruption position and duration

    Li, S. Y. W., Cox, A. L., Blandford, A., Cairns, P., Young, R. M. & Abeles, A., 2006.

    Research output: Contribution to conferencePaper

  33. Editorial › Research › Peer-reviewed
  34. Marine systems biology

    Tonon, T. & Eveillard, D., May 2015

    Editorial in Frontiers in genetics

  35. Literature review › Research › Peer-reviewed
  36. Glycosyltransferases: managers of small molecules

    Bowles, D., Isayenkova, J., Lim, E. K. & Poppenberger, B., Jun 2005

    Literature review in CURRENT OPINION IN PLANT BIOLOGY

  37. Metabolic regulation of circadian clocks

    Haydon, M. J., Hearn, T. J., Bell, L. J., Hannah, M. A. & Webb, A. A. R., May 2013

    Literature review in Seminars in cell & developmental biology

  38. Phytoremediation of explosives

    Hannink, N. K., Rosser, S. J. & Bruce, N. C., 2002

    Literature review in Critical reviews in plant sciences

  39. The molecular basis of plant cell wall extension

    Darley, C. P., Forrester, A. M. & McQueen-Mason, S. J., 2001

    Literature review in Plant Molecular Biology

  40. Comment/debate › Research › Peer-reviewed
  41. Comment/debate › Research › Not peer-reviewed
  42. Untapped resources for medical research

    Perez-Escobar, O. A., Richardson, J. E., Howes, M-J. R., Lucas, E., Alvarez de Roman, N., Collemare, J., Graham, I. A., Gratzfeld, J., Kersey, P. J., Leitch, I. J., Paton, A., Hollingsworth, P. J. & Antonelli, A., 14 Aug 2020

    Comment/debate in Science

  43. Letter › Research › Peer-reviewed
  44. Eleven golden rules of quantitative RT-PCR

    Udvardi, M. K., Czechowski, T. & Scheible, W-R., Jul 2008

    Letter in The Plant Cell

  45. Nomenclature for members of the expansin superfamily of genes and proteins

    Kende, H., Bradford, K. J., Brummell, D. A., Cho, H. T., Cosgrove, D. J., Fleming, A. J., Gehring, C., Lee, Y., McQueen-Mason, S., Rose, J. K. C. & Voesenek, L. A. C. J., May 2004

    Letter in Plant Molecular Biology

  46. Article › Research › Peer-reviewed
  47. A DELLA in Disguise: SPATULA Restrains the Growth of the Developing Arabidopsis Seedling

    Josse, E-M., Gan, Y., Bou-Torrent, J., Stewart, K. L., Gilday, A. D., Jeffree, C. E., Vaistij, F. E., Martinez-Garcia, J. F., Nagy, F., Graham, I. A. & Halliday, K. J., Apr 2011

    Article in The Plant Cell

  48. A carrot leucine-rich-repeat protein that inhibits ice recrystallization

    Worrall, D., Elias, L., Ashford, D., Smallwood, M., Sidebottom, C., Lillford, P., Telford, J., Holt, C. & Bowles, D., 2 Oct 1998

    Article in Science

  49. A chromosome-level Amaranthus cruentus genome assembly highlights gene family evolution and biosynthetic gene clusters that may underpin the nutritional value of this traditional crop

    Ma, X., Vaistij, F. E., Li, Y., Jansen van Rensburg, W. S., Harvey, S. E., Bairu, M. W., Venter, S. L., Mavengahama, S., Ning, Z., Graham, I. A., Van Deynze, A., Van de Peer, Y. & Denby, K., 7 May 2021, (E-pub ahead of print)

    Article in The Plant journal

  50. A cytosolic acyltransferase contributes to triacylglycerol synthesis in sucrose-rescued Arabidopsis seed oil catabolism mutants.

    Hernandez, M. L., Whitehead, L., He, Z., Gazda, V., Gilday, A., Kozhevnikova, E., Vaistij, F. E., Larson, T. R. & Graham, I. A., 3 Jul 2012, (E-pub ahead of print)

    Article in Plant Physiology

  51. A glycosyl transferase family 43 protein involved in xylan biosynthesis is associated with straw digestibility in Brachypodium distachyon

    Whitehead, C., Ostos Garrido, F. J., Reymond, M., Simister, R., Distelfeld, A., Atienza, S. G., Piston, F., Gomez, L. D. & Mcqueen-Mason, S. J., 25 Mar 2018, (E-pub ahead of print)

    Article in The New phytologist

  52. A novel protein from Ectocarpus sp. improves salinity and high temperature stress tolerance in Arabidopsis thaliana

    Rathor, P., Borza, T., Stone, S., Tonon, T., Yurgel, S., Potin, P. & Prithiviraj, B., 13 Feb 2021, (Accepted/In press)

    Article in International Journal of Molecular Sciences

  53. Allele-aware chromosome-level genome assembly of Artemisia annua reveals the correlation between ADS expansion and artemisinin yield

    Liao, B., Shen, X., Xiang, L., Guo, S., Chen, S., Meng, Y., Liang, Y., Ding, D., Bai, J., Zhang, D., Czechowski, T., Li, Y., Yao, H., Ma, T., Howard, C., Sun, C., Liu, H., Liu, J., Pei, J., Gao, J. & 10 others, Wang, J., Qiu, X., Huang, Z., Li, H., Yuan, L., Wei, J., Graham, I. A., Xu, J., Zhang, B. & Chen, S., 4 Aug 2022

    Article in Molecular plant

  54. An Arabidopsis mutant impaired in coenzyme a biosynthesis is sugar dependent for seedling establishment

    Rubio, S., Larson, T. R., Gonzalez-Guzman, M., Alejandro, S., Graham, I. A., Serrano, R. & Rodriguez, P. L., Mar 2006

    Article in Plant Physiology

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