Search research publications and outputs

  1. 2022
  2. Patterns and consequences of age-linked change in local relatedness in animal societies

    Ellis, S., Johnstone, R. A., Cant, M. A., Franks, D. W., Weiss, M. N., Alberts, S. C., Balcomb, K. C., Benton, C. H., Brent, L. J. N., Crockford, C., Davidian, E., Delahay, R. J., Ellifrit, D. K., Honer, O., Meniri, M., McDonald, R. A., Nichols, H. J., Thompson, F. J., Vigilant, L., Wittig, R. M. & 1 others, Croft, D. P., 1 Aug 2022, (Accepted/In press)

    Article in Nature Ecology and Evolution

  3. Identification and characterization of in vitro expanded hematopoietic stem cells

    Che, J., Bode, D., Kucinski, I., Cull, A. H., Bain, F., Becker, H. J., Jassinskaja, M., Barile, M., Boyd, G., Belmonte, M., Zeng, A. G. X., Igarashi, K. J., Rubio-Lara, J., Shepherd, M. S., Clay, A., Dick, J. E., Wilkinson, A. C., Nakauchi, H., Yamazaki, S., Göttgens, B. & 1 others, Kent, D. G., 27 Jul 2022, (Accepted/In press)

    Article in EMBO Reports

  4. Exploiting breakdown in nonhost effector-target interactions to boost host disease resistance

    McLellan, H., Harvey, S. E., Steinbrenner, J., Armstrong, M. R., He, Q., Clewes, R., Pritchard, L., Wang, W., Wang, S., Nussbaumer, T., Dohai, B., Luo, Q., Kumari, P., Duan, H., Roberts, A., Boevink, P. C., Neumann, C., Champouret, N., Hein, I., Falter-Braun, P. & 3 others, Beynon, J., Denby, K. & Birch, P. RJ., 25 Jul 2022, (Accepted/In press)

    Article in Proceedings of the National Academy of Sciences of the United States of America

  5. Ancestral Sequence Reconstruction for Exploring Alkaloid Evolution

    Lichman, B. R., 23 Jun 2022, Catharanthus roseus: Methods and Protocols. Springer, p. 165-179 15 p. (Methods in molecular biology; vol. 2505).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  6. What are mycorrhizal traits?

    Chaudhary, V. B., Holland, E. P., Charman-Anderson, S., Guzman, A., Bell-Dereske, L., Cheeke, T. E., Corrales, A., Duchicela, J., Egan, C., Gupta, M. M., Hannula, S. E., Hestrin, R., Hoosein, S., Kumar, A., Mhretu, G., Neuenkamp, L., Soti, P., Xie, Y. & Helgason, T., 7 Jun 2022, (E-pub ahead of print)

    Article in Trends in Ecology & Evolution

  7. Non-destructive chemical sensing within bulk soil using 1000 biosensors per gram of matrix

    Fulk, E. M., Gao, X., Chieh Lu, L., Redeker, K. R., Masiello, C. A. & Silberg, J. J., 6 Jun 2022, (Accepted/In press)

    Article in ACS Synthetic Biology

  8. Escherichia coli Chromosome Copy Number Measurement Using Flow Cytometry Analysis

    Hawkins, M. S., 31 May 2022, (E-pub ahead of print) Chromosome Architecture. 2nd ed. p. 145-153 (Methods in Molecular Biology; vol. 2476).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  9. Allele-aware chromosome-level genome assembly of Artemisia annua reveals the correlation between ADS expansion and artemisinin yield

    Liao, B., Shen, X., Xiang, L., Guo, S., Chen, S., Meng, Y., Liang, Y., Ding, D., Bai, J., Zhang, D., Czechowski, T., Li, Y., Yao, H., Ma, T., Howard, C., Sun, C., Liu, H., Liu, J., Pei, J., Gao, J. & 10 others, Wang, J., Qiu, X., Huang, Z., Li, H., Yuan, L., Wei, J., Graham, I. A., Xu, J., Zhang, B. & Chen, S., 27 May 2022, (Accepted/In press)

    Article in Molecular plant

  10. TIME FOR COFFEE regulates phytochrome A-mediated hypocotyl growth through dawn-phased signaling

    Wang, Y., Su, C., Yu, Y., He, Y., Wei, H., Li, N., Li, H., Duan, J., Li, B., Li, J., Davis, S. J. & Wang, L., 6 May 2022, (Accepted/In press)

    Article in The Plant Cell

  11. Innovative vaccine approaches—a Keystone Symposia report

    Cable, J., Rappuoli, R., Klemm, E. J., Kang, G., Mutreja, A., Wright, G. J., Pizza, M., Castro, S. A., Hoffmann, J. P., Alter, G., Carfi, A., Pollard, A. J., Krammer, F., Gupta, R. K., Wagner, C. E., Machado, V., Modjarrad, K., Corey, L., Gilbert, P. B., Dougan, G. & 14 others, Lurie, N., Bjorkman, P. J., Chiu, C., Nemes, E., Gordon, S. B., Steer, A. C., Rudel, T., Blish, C. A., Sandberg, J. T., Brennan, K., Klugman, K. P., Stuart, L. M., Madhi, S. A. & Karp, C. L., May 2022

    Article in Annals of the New York Academy of Sciences

  12. At high stocking rates, cattle do not functionally replace wild herbivores in shaping understory community composition

    Wells, HBM., Porensky, LM., Veblen, KE., Riginos, C., Stringer, LC., Dougill, AJ., Namoni, M., Ekadeli, J. & Young, TP., 30 Apr 2022

    Article in ECOLOGICAL APPLICATIONS

  13. Leaders of war: modelling the evolution of conflict among heterogeneous groups

    Sankey, DWE., Hunt, KL., Croft, DP., Franks, DW., Green, PA., Thompson, FJ., Johnstone, RA. & Cant, MA., 4 Apr 2022

    Article in Philosophical Transactions of the Royal Society B: Biological Sciences

  14. ETS transcription factor ELF3 (ESE-1) is a cell cycle regulator in benign and malignant prostate

    Archer, L. K., Frame, F. M., Walker, H. F., Droop, A. P., McDonald, G. L. K., Kucko, S., Berney, D. M., Mann, V. M., Simms, M. S. & Maitland, N. J., 3 Apr 2022, (Accepted/In press)

    Article in FEBS open bio

  15. Meta-analysis of diazotrophic signatures across terrestrial ecosystems at the continental scale

    Zhu, C., Friman, V-P., Li, L., Xu, Q., Guo, J., Guo, S., Shen, Q. & Ling, N., 1 Apr 2022, (E-pub ahead of print)

    Article in Environmental Microbiology

  16. Plant metabolic gene clusters in the multi-omics era

    Zhan, C., Shen, S., Yang, C., Liu, Z., Fernie, A., Graham, I. A. & Luo, J., 30 Mar 2022, (E-pub ahead of print)

    Review article in TRENDS IN PLANT SCIENCE

  17. Multi-omic based production strain improvement (MOBpsi) for bio-manufacturing of toxic chemicals

    Webb, J. P., Paiva, A. C., Rossoni, L., Alstrom-Moore, A., Springthorpe, V., Vaud, S., Yeh, V., Minde, D-P., Langer, S., Walker, H., Hounslow, A., Nielsen, D. R., Larson, T., Lilley, K., Stephens, G., Thomas, G. H., Bonev, B. B., Kelly, D. J., Conradie, A. & Green, J., 11 Mar 2022, (E-pub ahead of print)

    Article in Metabolic engineering

  18. Parallel evolution of Pseudomonas aeruginosa phage resistance and virulence loss in response to phage treatment in vivo and in vitro

    Castledine, M., Padfield, D., Sierocinski, P., Pascual, J. S., Hughes, A., Makinen, L., Friman, V-P., Pirnay, J-P., Merabishvili, M., De Vos, D. & Buckling, A., 21 Feb 2022, (Accepted/In press)

    Article in eLife

  19. GCH1 Deficiency Activates Brain Innate Immune Response and Impairs Tyrosine Hydroxylase Homeostasis

    Larbalestier, H., Keatinge, M., Watson, L., White, E., Gowda, S., Wei, W., Koler, K., Semenova, S. A., Elkin, A. M., Rimmer, N., Sweeney, S. T., Mazzolini, J., Sieger, D., Hide, W., McDearmid, J., Panula, P., MacDonald, R. B. & Bandmann, O., 26 Jan 2022

    Article in Journal of neuroscience

  20. Inflammatory Caspases: Toward a Unified Model for Caspase Activation by Inflammasomes

    Ross, C., Chan, A. H., von Pein, J. B., Maddugoda, M. P., Boucher, D. & Schroder, K., 26 Jan 2022, (E-pub ahead of print)

    Review article in Annual review of immunology

  21. Variability for cell-wall and yield components in commercial sugarcane (Saccharum spp.) progeny: contrasts with parental lines and energy cane

    García, J. M., Silva, M. P., Simister, R., McQueen Mason, S. J., Erazzú, L. E., Gomez, L. D. & Acevedohttps://orcid.org/0000-0002-6415-7504, A., 17 Jan 2022

    Article in Journal of Crop Improvement

  22. Surface Shave: Revealing the Apical-Restricted Uroglycome

    Wang, C. Y., Bergström, E., Southgate, J. & Thomas-Oates, J., 5 Jan 2022, (E-pub ahead of print)

    Article in Journal of Proteome Research

  23. 2021
  24. Chromatin dynamics during entry to quiescence and compromised functionality in cancer cells

    Dobbs, G. & Coverley, D. A., 5 Dec 2021, (Accepted/In press) Nuclear Architecture-Springer .

    Research output: Chapter in Book/Report/Conference proceedingChapter

  25. Investigating molecular crowding during cell division and hyperosmotic stress in budding yeast with FRET

    Lecinski, S., Shepherd, J. W., Frame, L., Hayton, I., MacDonald, C. & Leake, M. C., 30 Nov 2021, New Methods and Sensors for Membrane and Cell Volume Research. Model, M. A. & Levitan, I. (eds.). Academic Press Inc., p. 75-118 44 p. (Current Topics in Membranes; vol. 88).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  26. Mechanical, chemical, biological: Moving towards closed-loop bio-based recycling in a circular economy of sustainable textiles

    McQueen Mason, S. J., 9 Oct 2021, (Accepted/In press).

    Research output: Contribution to conferencePaperpeer-review

  27. LRRC15 mediates an accessory interaction with the SARS-CoV-2 spike protein

    Shilts, J., Crozier, T. W. M., Teixeira-Silva, A., Gabaev, I., Greenwood, E. J. D., Watson, S. J., Ortmann, B. M., Gawden-Bone, C. M., Pauzaite, T., Hoffmann, M., Nathan, J. A., Pohlmann, S., Lehner, P. J. & Wright, G. J., 25 Sep 2021, (bioRxiv).

    Research output: Working paperPreprint

  28. Building crannogs in the 9th–12th centuries AD in northern Scotland: an old tradition in a new landscape

    Stratigos, M. J. & Noble, G., 16 Sep 2021, Proceedings of RURALIA XIII Stirling, Scotland, September 2019. Leiden: Sidestone Press, p. 179-188 10 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)peer-review

  29. The Scottish Bladder Cancer Quality Performance Indicators Influencing Outcomes, Prognosis, and Surveillance (Scot BC Quality OPS) Clinical Project

    Mariappan, P., Ahmad, I., Amer, T., Dyrskjøt Andersen, L., Baker, S. C., Bhatt, J., Brown, M., Bryan, R., Catto, J. W. F., Chahal, R., Chapman, A., Chaudhry, A., DeSouza, J., Dimitropoulos, K., Dreyer, B., Gourley, C., Gray, J., Hamid, S., Hanchanale, V., Harrison, E. & 32 others, Hasan, R., Hendry, D., Hollins, G., Hussain, S. A., Johnson, M., Johnston, A., Jones, R., Kandaswamy, G. V., Kelly, J., Khan, R., Kotwal, S., Kumar, P., Kumar, V., Laing, K., Lord-McKenzie, T., MacLennan, S., Makaroff, L., Mitchell, I. D. C., Morrison, D., Nair, R., Nandwani, G. M., Norrie, J., Ramsey, S., Scowcroft, H., Sharpe, C., Simpson, H., Sridhar, A. N., Thomas, B. G., Thurairaja, R., Trail, M., Van Hemelrijck, M. & Vasdev, N., 18 Aug 2021

    Article in European urology focus

  30. Use of Sargassum compost in soil amelioration for mangrove seedling production

    Webber, M., Trench, C., Maddix, G-M. & Tonon, T., 31 May 2021.

    Research output: Contribution to conferencePosterpeer-review

  31. Validation of IMS-MS as a screening tool to identify type II kinase inhibitors of FGFR1 kinase

    Beeston, H., Klein, T., Norman, R., Tucker, J. A., Anderson, M., Ashcroft, A. E. & Holdgate, G., 26 May 2021, (E-pub ahead of print)

    Article in Rapid Communications in Mass Spectrometry

  32. GCRF African SWIFT White Paper Policy Brief: The future of African weather forecasting

    Youds, L., Parker, DJ., Adefisan, EA., Antwi-Agyei, P., Bain, CL., Black, ECL., Blyth, AM., Dougill, AJ., Hirons, LC., Indasi, VS., Lamptey, BL., Marshall, F., Marsham, JH., Stein, THM., Taylor, CM., Todd, MC., Visman, EL. & Woolnough, SJ., 13 May 2021, University of Leeds;.

    Research output: Working paper

  33. Utilizing the Untapped Potential of Indirect Encoding for Neural Networks with Meta Learning

    Katona, A., Machado, P., Lourenco, N., Franks, D. W. & Walker, J. A., 7 Apr 2021, EvoApplications 2021: Applications of Evolutionary Computation. Springer

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  34. Spatial integration of transcription and splicing in a dedicated compartment sustains monogenic antigen expression in African trypanosomes

    Faria, J., Luzak, V., Müller, L. S. M., Brink, B. G., Hutchinson, S., Glover, L., Horn, D. & Siegel, T. N., Mar 2021

    Article in Nature Microbiology

  35. Cropland trees need to be included for accurate model simulations of land-atmosphere heat fluxes, temperature, boundary layer height, and ozone

    Mishra, A. K., Sinha, B., Kumar, R., Barth, M., Hakkim, H., Kumar, V., Kumar, A., Datta, S., Guenther, A. & Sinha, V., 10 Jan 2021

    Article in Science of the Total Environment

  36. 2020
  37. Triggering Closure of a Sialic Acid TRAP Transporter Substrate Binding Protein through Binding of Natural or Artificial Substrates

    Peter, M. F., Gebhardt, C., Glaenzer, J., Schneberger, N., de Boer, M., Thomas, G. H., Cordes, T. & Hagelueken, G., 28 Dec 2020, (E-pub ahead of print)

    Article in Journal of Molecular Biology

  38. Competition Between Native and Non-native Plants

    Wandrag, L. & Catford, J., 20 Nov 2020, Plant invasions: the role of biotic interactions: The Role of Biotic Interactions. Traveset, A. & Richardson, D. M. (eds.). CABI, (CABI Invasives Series).

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)peer-review

  39. Environment, Economy and Subsistence: Landscape reconstruction

    Stratigos, M. J., 1 Nov 2020, Darkness Visible: The Sculptor's Cave, Covesea, from the Bronze Age to the Picts. Edinburgh: Society of Antiquaries of Scotland, p. 215-220 6 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)peer-review

  40. Benign Prostatic Hyperplasia- what do we know?

    Devlin, C. M., Simms, M. S. & Maitland, N. J., 7 Sep 2020, (E-pub ahead of print)

    Article in BJU International

  41. Deep convergence, shared ancestry and evolutionary novelty in the genetic architecture of heliconius mimicry

    Morris, J., Hanly, J. J., Martin, S. H., Van Belleghem, S. M., Salazar, C., Jiggins, C. D. & Dasmahapatra, K. K., 3 Sep 2020, (E-pub ahead of print)

    Article in Genetics

  42. Caste: Worker Polyethism in the Social Hymenoptera

    Robinson, E. J. H. & Jandt, J., 26 Jul 2020, Encyclopedia of Social Insects. Chris K., S. (ed.). Springer-Verlag

    Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary

  43. EGF signaling in bowel carcinoma cells utilizes higher order architectures of EGFR and HER2

    Wollman, A., Llorente-Garcia, I., Fournier, C., Harriman, O. L., Hargreaves, A., Shashkova, S., Ouaret, D., Zhou, P., Liu, T-C., Wilding, J., Kusumi, A., Bodmer, W. & Leake, M. C., 12 Jul 2020, bioRxiv, at Cold Spring Harbor Laboratory.

    Research output: Working paper

  44. The influence of feeding behaviour and temperature on the capacity of mosquitoes to transmit malaria

    Suh, E., Grossman, M. K., Waite, J. L., Dennington, N. L., Sherrard-Smith, E., Churcher, T. S. & Thomas, M. B., Jul 2020

    Article in Nature Ecology and Evolution

  45. p53-dependent polyploidisation after DNA damage in G2 phase

    Middleton, A., Suman, R., O'Toole, P. J., Akopyan, K. & Lindqvist, A., 10 Jun 2020, bioRxiv, at Cold Spring Harbor Laboratory, (bioRxiv).

    Research output: Working paperPreprint

  46. Arabidopsis XTH4 and XTH9 contribute to wood cell expansion and secondary wall formation

    Kushwah, S., Banasiak, A., Nishikubo, N., Derba-Maceluch, M., Majda, M., Endo, S., Kumar, V., Gomez, L. D., Gorzsas, A., McQueen Mason, S. J., Braam, J., Sundberg, B. & Mellerowicza, E. J., Apr 2020

    Article in Plant Physiology

  47. Restoration of blanket bog vegetation for biodiversity, carbon storage and water regulation

    Heinemeyer, A., Vallack, H. W., Morton, P., Pateman, R. M., Dytham, C., Philip, I., McClean, C. J., Bristow, C., Pearce-Higgins, J. W. & Lindsay, R., 24 Mar 2020, 252 p.

    Research output: Book/ReportCommissioned report

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