Search research publications and outputs

  1. 2019
  2. Insights into microbial community structure and diversity in oil palm waste compost

    Khalid, N. A., Rajandas, H., Parimannan, S., Croft, L. J., Loke, S., Chong, C. S., Bruce, N. C. & Yahya, A., 1 Oct 2019

    Article in 3 Biotech

  3. 2018
  4. 2016
  5. Genetic diversity of eight millet genera assessed by using molecular and morphological markers

    Dvořáková, Z., Čepková, P. H., Viehmannová, I., Havlicková, L. & Janovská, D., 29 Feb 2016

    Article in Crop and Pasture Science

  6. The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea

    Olsen, J. L., Rouzé, P., Verhelst, B., Lin, Y-C., Bayer, T., Collen, J., Dattolo, E., De Paoli, E., Dittami, S., Maumus, F., Michel, G., Kersting, A., Lauritano, C., Lohaus, R., Töpel, M., Tonon, T., Vanneste, K., Amirebrahimi, M., Brakel, J., Boström, C. & 15 others, Chovatia, M., Grimwood, J., Jenkins, J. W., Jueterbock, A., Mraz, A., Stam, W. T., Tice, H., Bornberg-Bauer, E., Green, P. J., Pearson, G. A., Procaccini, G., Duarte, C. M., Schmutz, J., Reusch, T. B. H. & Van de Peer, Y., 18 Feb 2016

    Article in Nature

  7. Host-microbe interactions as a driver of acclimation to salinity gradients in brown algal cultures

    Dittami, S. M., Duboscq-Bidot, L., Perennou, M., Gobet, A., Gobet, A., Corre, E., Boyen, C. & Tonon, T., Jan 2016

    Article in The ISME Journal

  8. 2015
  9. Lignocellulose degradation mechanisms across the Tree of Life

    Cragg, S. M., Beckham, G. T., Bruce, N. C., Bugg, T. D. H., Distel, D. L., Dupree, P., Etxabe, A. G., Goodell, B. S., Jellison, J., McGeehan, J. E., McQueen-Mason, S. J., Schnorr, K., Walton, P. H., Watts, J. E. M. & Zimmer, M., Dec 2015

    Review article in Current Opinion in Chemical Biology

  10. Identification of QTL markers contributing to plant growth, oil yield and fatty acid composition in the oilseed crop Jatropha curcas L

    King, A. J., Montes, L., Clarke, J. G., Iztep, J., Perez, C. A. A., Jongschaap, R. E. E., Visser, R. G. F., van Loo, E. & Graham, I. A., 25 Sep 2015

    Article in Biotechnology for biofuels

  11. Morphinan biosynthesis in opium poppy requires a P450-oxidoreductase fusion protein

    Winzer, T. H., Kern, M. F., King, A. J., Larson, TR., Teodor, R. I., Donninger, S., Li, Y., Dowle, A., Cartwright, J., Bates, R., David, A., Thomas, J., Walker, C., Bowser, T. & Graham, I. A., 17 Jul 2015

    Article in Science

  12. Effect of Brassica napus cultivar on cellulosic ethanol yield

    Wood, I. P., Wellner, N., Elliston, A., Wilson, D. R., Bancroft, I. & Waldron, K. W., 11 Jul 2015

    Article in Biotechnology for biofuels

  13. Expression of fungal acetyl xylan esterase in Arabidopsis thaliana improves saccharification of stem lignocellulose.

    Pawar, P. M-A., Derba-Maceluch, M., Chong, S-L., Gomez, L. D., Miedes, E., Ratke, C., Gaertner, C., Mouille, G., McQueen Mason, S. J., Molina, A., Sellstedt, A., Tenkanen, M. & Mellerowicz, E., 11 May 2015

    Article in Plant biotechnology journal

  14. Marine systems biology

    Tonon, T. & Eveillard, D., May 2015

    Editorial in Frontiers in genetics

  15. Monoclonal antibodies directed to fucoidan preparations from brown algae

    Torode, T. A., Marcus, S. E., Jam, M., Tonon, T., Blackburn, R. S., Hervé, C. & Knox, J. P., 18 Feb 2015

    Article in PLoS ONE

  16. Residual biomass saccharification in processing tomato is affected by cultivar and nitrogen fertilization

    Ercolano, M. R., Gomez, L. D., Andolfi, A., Simister, R., Troise, C., Angelino, G., Borrelli, C., McQueen-Mason, S. J., Evidente, A., Frusciante, L. & Caruso, G., Jan 2015

    Article in Biomass & bioenergy

  17. 2014
  18. Side by Side Comparison of Chemical Compounds Generated by Aqueous Pretreatments of Maize Stover, Miscanthus and Sugarcane Bagasse

    Gómez, L. D., Vanholme, R., Bird, S., Goeminne, G., Trindade, L. M., Polikarpov, I., Simister, R., Morreel, K., Boerjan, W. & McQueen Mason, S. J., Dec 2014

    Article in BioEnergy Research

  19. The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond

    Prigent, S., Collet, G., Dittami, S. M., Delage, L., Ethis de Corny, F., Dameron, O., Eveillard, D., Thiele, S., Cambefort, J., Boyen, C., Siegel, A. & Tonon, T., Oct 2014

    Article in The Plant journal

  20. Genome and metabolic network of "Candidatus Phaeomarinobacter ectocarpi" Ec32, a new candidate genus of Alphaproteobacteria frequently associated with brown algae

    Dittami, S. M., Barbeyron, T., Boyen, C., Cambefort, J., Collet, G., Delage, L., Gobet, A., Groisillier, A., Leblanc, C., Michel, G., Scornet, D., Siegel, A., Tapia, J. E. & Tonon, T., 25 Jul 2014

    Article in Frontiers in genetics

  21. Mannitol metabolism in brown algae involves a new phosphatase family

    Groisillier, A., Shao, Z., Michel, G., Goulitquer, S., Bonin, P., Krahulec, S., Nidetzky, B., Duan, D., Boyen, C. & Tonon, T., 1 Feb 2014

    Article in Journal of Experimental Botany

  22. Evaluating the composition and processing potential of novel sources of Brazilian biomass for sustainable biorenewables production

    Lima, M. A., Gomez, L. D., Steele-King, C. G., Simister, R., Bernardinelli, O. D., Carvalho, M. A., Rezende, C. A., Labate, C. A., Deazevedo, E. R., McQueen-Mason, S. J., Polikarpov, I. & McQueen Mason, S. J., 18 Jan 2014

    Article in Biotechnology for biofuels

  23. Chondrus crispus - A present and historical model organism for red seaweeds

    Collén, J., Cornish, M. L., Craigie, J., Ficko-Blean, E., Hervé, C., Krueger-Hadfield, S. A., Leblanc, C., Michel, G., Potin, P., Tonon, T. & Boyen, C., 2014

    Article in Advances in Botanical Research

  24. Effect of a mutagenized acyl‐ACP thioesterase FATA allele from sunflower with improved activity in tobacco leaves and Arabidopsis seeds.

    Moreno-Pérez, A. J., Venegas‐Calerón, M., Vaistij, F. E., Salas, J. J., Larson, T. R., Garcés, R., Graham, I. A. & Martínez-Force, E., 2014

    Article in Planta

  25. 2013
  26. Identification of crop cultivars with consistently high lignocellulosic sugar release requires the use of appropriate statistical design and modelling.

    Oakey, H., Shafiei, R., Comadran, J., Uzrek, N., Cullis, B., Gomez, L., Whitehead, C., McQueen Mason, S. J., Waugh, R. & Halpin, C., 21 Dec 2013

    Article in Biotechnology for biofuels

  27. Different stress responsive strategies to drought and heat in two durum wheat cultivars with contrasting water use efficiency

    Aprile, A., Havlickova, L., Panna, R., Marè, C., Borrelli, G. M., Marone, D., Perrotta, C., Rampino, P., De Bellis, L., Curn, V., Mastrangelo, A. M., Rizza, F. & Cattivelli, L., 22 Nov 2013

    Article in BMC Genomics

  28. An inhibitor of oil body mobilization in Arabidopsis.

    Brown, L-A., Larson, T., Graham, I. A., Hawes, C., Paudyal, R., Warriner, S. & Baker, A., Nov 2013

    Article in New Phytologist

  29. Photosynthetic entrainment of the Arabidopsis thaliana circadian clock

    Haydon, M. J., Mielczarek, O., Robertson, F. C., Hubbard, K. E. & Webb, A. A. R., 31 Oct 2013

    Article in Nature

  30. Genetic diversity of yacon (Smallanthus sonchifolius (Poepp. & Endl.) H. Robinson) and its wild relatives as revealed by ISSR markers

    Svobodová, E., Dvořáková, Z., Čepková, P. H., Viehmannová, I., Havlíčková, L., Cusimamani, E. F., Russo, D. & Meza Zela, G., Oct 2013

    Article in Biochemical systematics and ecology

  31. Linkage mapping in the oilseed crop Jatropha curcas L. reveals a locus controlling the biosynthesis of phorbol esters which cause seed toxicity.

    King, A. J., Montes, L., Clarke, J. G., Affleck, J., Li, Y., Witsenboer, H., van der Vossen, E., van der Linde, P., Tripathi, Y., Tavares, E., Shukla, P., Rajasekaran, T., van Loo, E. & Graham, I. A., Oct 2013

    Article in Plant biotechnology journal

  32. Structural characterization of a unique marine animal family 7 cellobiohydrolase suggests a mechanism of cellulase salt tolerance

    Kern, M., McGeehan, J. E., Streeter, S. D., Martin, R. N. A., Besser, K., Elias, L., Eborall, W., Malyon, G. P., Payne, C. M., Himmel, M. E., Schnorr, K., Beckham, G. T., Cragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 3 Jun 2013

    Article in Proceedings of the National Academy of Sciences of the United States of America

  33. Metabolic regulation of circadian clocks

    Haydon, M. J., Hearn, T. J., Bell, L. J., Hannah, M. A. & Webb, A. A. R., May 2013

    Literature review in Seminars in cell & developmental biology

  34. Key role for a glutathione transferase in multiple-herbicide resistance in grass weeds

    Cummins, I., Wortley, D. J., Sabbadin, F., He, Z., Coxon, C. R., Straker, H. E., Sellars, J. D., Knight, K., Edwards, L., Hughes, D., Kaundun, S. S., Hutchings, S-J., Steel, P. G. & Edwards, R., 9 Apr 2013

    Article in Proceedings of the National Academy of Sciences of the United States of America

  35. Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida

    Collén, J., Porcel, B., Carré, W., Ball, S. G., Chaparro, C., Tonon, T., Barbeyron, T., Michel, G., Noel, B., Valentin, K., Elias, M., Artiguenave, F., Arun, A., Aury, J-M., Barbosa-Neto, J. F., Bothwell, J. H., Bouget, F-Y., Brillet, L., Cabello-Hurtado, F., Capella-Gutiérrez, S. & 38 others, Charrier, B., Cladière, L., Cock, J. M., Coelho, S. M., Colleoni, C., Czjzek, M., Da Silva, C., Delage, L., Denoeud, F., Deschamps, P., Dittami, S. M., Gabaldón, T., Gachon, C. M. M., Groisillier, A., Hervé, C., Jabbari, K., Katinka, M., Kloareg, B., Kowalczyk, N., Labadie, K., Leblanc, C., Lopez, P. J., McLachlan, D. H., Meslet-Cladiere, L., Moustafa, A., Nehr, Z., Nyvall Collén, P., Panaud, O., Partensky, F., Poulain, J., Rensing, S. A., Rousvoal, S., Samson, G., Symeonidi, A., Weissenbach, J., Zambounis, A., Wincker, P. & Boyen, C., 26 Mar 2013

    Article in Proceedings of the National Academy of Sciences of the United States of America

  36. Disrupting the cynnamil alcohol dehydrogenase 1 gene (BdCAD1) leads to altered lignification and improved saccharification in Brachypodium distachyon.

    M.B d'Yvoire, O. Bouchabke-Coussa, W.Voorend, S. Antelme, L. Cezard, F. Legee, P. Lebris, S. Legay, Whitehead, C. B., McQueen Mason, S. J., Gomez, L. D., L. Jouanin, C. Lapierre & R. Sibout, Feb 2013

    Article in Plant Journal

  37. 2012
  38. The Ectocarpus Genome and Brown Algal Genomics. The Ectocarpus Genome Consortium.

    Cock, J. M., Sterck, L., Ahmed, S., Allen, A. E., Amoutzias, G., Anthouard, V., Artiguenave, F., Arun, A., Aury, J. M., Badger, J. H., Beszteri, B., Billiau, K., Bonnet, E., Bothwell, J. H., Bowler, C., Boyen, C., Brownlee, C., Carrano, C. J., Charrier, B., Cho, G. Y. & 64 others, Coelho, S. M., Collén, J., Le Corguillé, G., Corre, E., Dartevelle, L., Da Silva, C., Delage, L., Delaroque, N., Dittami, S. M., Doulbeau, S., Elias, M., Farnham, G., Gachon, C. M. M., Godfroy, O., Gschloessl, B., Heesch, S., Jabbari, K., Jubin, C., Kawai, H., Kimura, K., Kloareg, B., Küpper, F. C., Lang, D., Le Bail, A., Luthringer, R., Leblanc, C., Lerouge, P., Lohr, M., Lopez, P. J., Macaisne, N., Martens, C., Maumus, F., Michel, G., Miranda-Saavedra, D., Morales, J., Moreau, H., Motomura, T., Nagasato, C., Napoli, C. A., Nelson, D. R., Nyvall-Collén, P., Peters, A. F., Pommier, C., Potin, P., Poulain, J., Quesneville, H., Read, B., Rensing, S. A., Ritter, A., Rousvoal, S., Samanta, M., Samson, G., Schroeder, D. C., Scornet, D., Ségurens, B., Strittmatter, M., Tonon, T., Tregear, J. W., Valentin, K., Von Dassow, P., Yamagishi, T., Rouzé, P., Van de Peer, Y. & Wincker, P., 2 Oct 2012

    Article in Advances in Botanical Research

  39. Arabidopsis GT34 family contains five xyloglucan α-1,6-xylosyltransferases.

    McQueen Mason, S. J., Vuttipongchaikij S, Broclehurst D, Steele-King C, Ashford DA, & Gomez LD, Aug 2012

    Article in New Phytologist

  40. Towards deciphering dynamic changes and evolutionary mechanisms involved in the adaptation to low salinities in Ectocarpus (brown algae)

    Dittami, S. M., Gravot, A., Goulitquer, S., Rousvoal, S., Peters, A. F., Bouchereau, A., Boyen, C. & Tonon, T., Aug 2012

    Article in The Plant journal

  41. Role of Plant Laccases in Lignin Polymerization

    Berthet, S., Thevenin, J., Baratiny, D., Demont-Caulet, N., Debeaujon, I., Bidzinski, P., Leple, J. C., Huis, R., Hawkins, S., Gomez, L. D., Lapierre, C. & Jouanin, L., 14 Jun 2012

    Article in Advances in Botanical Research

  42. Reduced expression of FatA thioesterases in Arabidopsis affects the oil content and fatty acid composition of the seeds

    Moreno-Perez, AJ., Venegas-Caleron, M., Vaistij, F. E., Salas, JJ., Larson, TR., Garces, R., Graham, I. A. & Martinez-Force, E., Mar 2012

    Article in Planta

  43. Factors limiting the synthesis of virgin olive oil volatile esters

    Sanchez-Ortiz, A., Romero-Segura, C., Gazda, V., Graham, I. A., Sanz, C. & Perez, AG., 8 Feb 2012

    Article in Journal of Agricultural and Food Chemistry

  44. Tissue-Specific Whole Transcriptome Sequencing in Castor, Directed at Understanding Triacylglycerol Lipid Biosynthetic Pathways

    Brown, A. P., Kroon, J. T. M., Swarbreck, D., Febrer, M., Larson, T. R., Graham, I. A., Caccamo, M. & Slabas, A. R., 3 Feb 2012

    Article in PLoS ONE

  45. Rosiglitazone increases fatty acid Δ9-desaturation and decreases elongase activity index in human skeletal muscle in vivo

    Mai, K., Andres, J., Bobbert, T., Assmann, T., Biedasek, K., Diederich, S., Graham, I. A., Larson, T. R., Pfeiffer, AF. & Spranger, J., Jan 2012

    Article in Metabolism

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