Search research publications and outputs

  1. Article › Research › Not peer-reviewed
  2. Seeing the wood through the trees. Combining shape information from different landmark configurations

    Profico, A., Piras, P., Buzi, C., Del Bove, A., Melchionna, M., Senczuk, G., Varano, V., Veneziano, A., Raia, P. & Manzi, G., 27 Nov 2019, (E-pub ahead of print)

    Article in Hystrix

  3. Article › Research › Peer-reviewed
  4. 'Palaeoshellomics' reveals the use of freshwater mother-of-pearl in prehistory

    Sakalauskaite, J., Andersen, S. H., Biagi, P., Borrello, M. A., Cocquerez, T., Colonese, A. C., Dal Bello, F., Girod, A., Heumüller, M., Koon, H., Mandili, G., Medana, C., Penkman, K. E., Plasseraud, L., Schlichtherle, H., Taylor, S., Tokarski, C., Thomas, J., Wilson, J., Marin, F. & 1 others, Demarchi, B., 7 May 2019

    Article in eLife

  5. 3D Modeling of craniofacial ontogeny and sexual dimorphism in children

    Smith, O. A. M., Nashed, Y. S. G., Duncan, C., Pears, N., Profico, A. & O'Higgins, P., 26 Dec 2020, (E-pub ahead of print)

    Article in Anatomical Record

  6. A Dynamic 6,000-Year Genetic History of Eurasia's Eastern Steppe

    Jeong, C., Wang, K., Taylor, W. T. T., Miller, B. K., Bemmann, J. H., Stahl, R., Chiovelli, C., Knolle, F., Ulziibayar, S., Khatanbaatar, D., Erdenebaatar, D., Erdenebat, U., Ochir, A., Ankhsanaa, G., Vanchigdash, C., Ochir, B., Munkhbayar, C., Tumen, D., Kovalev, A., Kradin, N. & 12 others, Bazarov, B. A., Miyagashev, D. A., Konovalov, P. B., Zhambaltarova, E., Miller, A. V., Haak, W., Schiffels, S., Krause, J., Boivin, N., Erdene, M., Hendy, J. & Warinner, C., 12 Nov 2020

    Article in Cell

  7. A Major Change in Rate of Climate Niche Envelope Evolution during Hominid History

    Mondanaro, A., Melchionna, M., Di Febbraro, M., Castiglione, S., Holden, P. B., Edwards, N. R., Carotenuto, F., Maiorano, L., Modafferi, M., Serio, C., Diniz-Filho, J. A. F., Rangel, T., Rook, L., O'Higgins, P., Spikins, P., Profico, A. & Raia, P., 20 Nov 2020

    Article in iScience

  8. A Mesolithic settlement site at Howick, Northumberland: a preliminary report

    Waddington, C., Bailey, G., Bayliss, A., Boomer, I., Milner, N., Shiel, R., Stevenson, T. & Pedersen, K., 2003

    Article in Archaeologia Aeliana

  9. A Vinča potscape: formal chronological models for the use and development of Vinča ceramics in south-east Europe

    Whittle, A., Bayliss, A., Barclay, A., Gaydarska, B., Bánffy, E., Borić, D., Draşovean, F., Jakucs, J., Marić, M., Orton, D. C., Pantović, I., Schier, W., Tasić, N. & Vander Linden, M., 30 Dec 2016

    Article in Documenta Praehistorica

  10. A chrono-cultural reassessment of El Cuco rock-shelter: a new sequence for the Late Middle Paleolithic in the Cantabrian Region (northern Iberia)

    Gutiérrez-Zugasti, I., Ríos-Garaizar, J., Marín-Arroyo, A. B., Rasines del Río, P., Maroto, J., Jones, J. R., Bailey, G. & Richards, M. P., 21 Jul 2017

    Article in Quaternary International

  11. A drowned Mesolithic shell midden complex at Hjarnø Vesterhoved,Denmark and its wider significance

    Moe Astrup, P., Benjamin, J., Stankiewicz, F., Woo, K., McCarthy, J., Wiseman, C., Baggaley, P., Jerbic, K., Fowler, M., Skriver, C. & Bailey, G., 19 Mar 2021, (E-pub ahead of print)

    Article in Quaternary Science Reviews

  12. A large handaxe from Wadi Dabsa and early hominin adaptations within the Arabian Peninsula

    Foulds, F., Shuttleworth, A., Sinclair, A., Alsharekh, A., Al Ghamdi, S., Inglis, R. H. & Bailey, G., 7 Dec 2017

    Article in Antiquity

  13. A multidisciplinary approach for investigating dietary and medicinal habits of the Medieval population of Santa Severa (7th-15th centuries, Rome, Italy)

    Gismondi, A., Baldoni, M., Gnes, M., Scorrano, G., D'Agostino, A., Di Marco, G., Calabria, G., Petrucci, M., Müldner, G., Von Tersch, M., Nardi, A., Enei, F., Canini, A., Rickards, O., Alexander, M. & Martínez-Labarga, C., 28 Jan 2020

    Article in PLoS ONE

  14. A multidisciplinary approach to investigate the osteobiography of the Roman Imperial population from Muracciola Torresina (Palestrina, Rome, Italy)

    Baldoni, M., Gismondi, A., Alexander, M. M., D'Agostino, A., Tibaldi, D., Di Marco, G., Scano, G., Canini, A., Caserta, E., Richards, O. & Martinez-Labarga, C., Oct 2019

    Article in Journal of Archaeological Science Reports

  15. A new model for ancient DNA decay based on paleogenomic meta-analysis

    Kistler, L., Ware, R., Smith, O., Collins, M. & Allaby, R. G., 9 May 2017

    Article in Nucleic Acids Research

  16. A new, fast method to search for morphological convergence with shape data

    Castiglione, S., Serio, C., Tamagnini, D., Melchionna, M., Mondanaro, A., Di Febbraro, M., Profico, A., Piras, P., Barattolo, F. & Raia, P., 27 Dec 2019

    Article in PLoS ONE

  17. A re-evaluation of manner of death at Roman Herculaneum following the AD 79 eruption of Vesuvius

    Martyn, R., Craig, O. E., Ellingham, S. TD., Islam, M., Fattore, L., Sperduti, A., Bondioli, L. & Thompson, T., 23 Jan 2020, (E-pub ahead of print)

    Article in Antiquity

  18. A tale of two tells: dating the Çatalhöyük West Mound

    Orton, D. C., Anvari, J., Gibson, C., Last, J., Bogaard, A., Rosenstock, E. & Biehl, P., 27 Jun 2018, (E-pub ahead of print)

    Article in Antiquity

  19. A unified protocol for simultaneous extraction of DNA and proteins from archaeological dental calculus

    Fagernäs, Z., García-Collado, M. I., Hendy, J., Hofman, C. A., Speller, C., Velsko, I. & Warinner, C., Jun 2020

    Article in Journal of archaeological science

  20. ARIADNE: A Research Infrastructure for Archaeology

    Meghini, C., Scopigno, R., Richards, J. D., Wright, H. E., Geser, G., Cuy, S., Fihn, J., Fanini, B., Hollander, H., Niccolucci, F., Felicetti, A., Ronzino, P., Nurra, F., Papatheodoridou, C., Gavrilis, D., Theodoridou, M., Doerr, M., Tudhope, D., Binding, C. & Vlachidis, A., 11 Aug 2017

    Article in ACM Journal on Computing and Cultural Heritage

  21. Aboriginal artefacts on the continental shelf reveal ancient drowned cultural landscapes in northwest Australia

    Benjamin, J., O'Leary, M., McDonald, J., Wiseman, C., McCarthy, J., Beckett, E., Morrison, P., Leach, J., Hacker, J., Baggaley, P., Jerbic, K., Fowler, M., Fairweather, J., Jeffries, P., Ulm, S. & Bailey, G., 1 Jul 2020

    Article in PLoS ONE

  22. An Integrated Approach to the Taxonomic Identification of Prehistoric Shell Ornaments

    Demarchi, B., O'Connor, S., De Lima Ponzoni, A., De Almeida Rocha Ponzoni, R., Sheridan, A., Penkman, K. E. H., Hancock, Y. & Wilson, J. C., 17 Jun 2014

    Article in PLoS ONE

  23. Ancient DNA reveals the timing and persistence of organellar genetic bottlenecks over 3,000 years of sunflower domestication and improvement

    Wales, N., Akman, M., Watson, R. H. B., Sánchez Barreiro, F., Smith, B. D., Gremillion, K. J., Gilbert, M. T. P. & Blackman, B. K., 9 Jan 2018, (E-pub ahead of print)

    Article in Evolutionary applications

  24. Ancient DNA suggests modern wolves trace their origin to a late Pleistocene expansion from Beringia

    Loog, L., Thalmann, O., Sinding, M-H. S., Schuenemann, V. J., Perri, A., Germonpré, M., Bocherens, H., Witt, K. E., Samaniego Castruita, J. A., Velasco, M. S., Lundstrøm, I. K. C., Sonet, G., Wales, N., Frantz, L., Schroeder, H., Budd, J., Jimenez, E-L., Fedorov, S., Gasparyan, B., Kandel, A. W. & 16 others, Lázničková‐Galetová, M., Napierala, H., Uerpmann, H-P., Nikolskiy, P. A., Pavlova, E. Y., Pitulko, V. V., Herzig, K-H., Malhi, R. S., Willerslev, E., Hansen, A. J., Dobney, K., Gilbert, M. T. P., Krause, J., Larson, G., Eriksson, A. & Manica, A., 16 Dec 2019, (E-pub ahead of print)

    Article in Molecular Ecology

  25. Ancient Plant Genomics in Archaeology, Herbaria, and the Environment: Annual Review of Plant Biology

    Kistler, L., Bieker, V. C., Martin, M. D., Pedersen, M. W., Madrigal, J. R. & Wales, N., 30 Apr 2020

    Article in Annual Review of Plant Biology

  26. Ancient amino acids from fossil feathers in amber

    McCoy, V. E., Gabbott, S. E., Penkman, K., Collins, M. J., Presslee, S., Holt, J., Grossman, H., Wang, B., Solórzano Kraemer, M. M., Delclòs, X. & Peñalver, E., 23 Apr 2019

    Article in Scientific Reports

  27. Ancient cattle genomics, origins, and rapid turnover in the Fertile Crescent

    Verdugo, M. P., Mullin, V. E., Scheu, A., Mattiangeli, V., Daly, K. G., Maisano Delser, P., Hare, A. J., Burger, J., Collins, M. J., Kehati, R., Hesse, P., Fulton, D., Sauer, E. W., Mohaseb, F. A., Davoudi, H., Khazaeli, R., Lhuillier, J., Rapin, C., Ebrahimi, S., Khasanov, M. & 21 others, Vahidi, S. M. F., MacHugh, D. E., Ertuğrul, O., Koukouli-Chrysanthaki, C., Sampson, A., Kazantzis, G., Kontopoulos, I., Bulatovic, J., Stojanović, I., Mikdad, A., Benecke, N., Linstädter, J., Sablin, M., Bendrey, R., Gourichon, L., Arbuckle, B. S., Mashkour, M., Orton, D., Horwitz, L. K., Teasdale, M. D. & Bradley, D. G., 12 Jul 2019

    Article in Science

  28. Ancient genomes indicate population replacement in Early Neolithic Britain

    Brace, S., Diekmann, Y., Booth, T. J., van Dorp, L., Faltyskova, Z., Rohland, N., Mallick, S., Olalde, I., Ferry, M., Michel, M., Oppenheimer, J., Broomandkhoshbacht, N., Stewardson, K., Martiniano, R., Walsh, S., Kayser, M., Charlton, S., Hellenthal, G., Armit, I., Schulting, R. & 7 others, Craig, O. E., Sheridan, A., Parker Pearson, M., Stringer, C., Reich, D., Thomas, M. G. & Barnes, I., 15 Apr 2019

    Article in Nature Ecology and Evolution

  29. Ancient genomes reveal complex patterns of population movement, interaction, and replacement in sub-Saharan Africa

    Wang, K., Goldstein, S., Bleasdale, M., Clist, B., Clist, B., Bostoen, K., Bakwa-Lufu, P., Buck, L. T., Buck, L. T., Crowther, A., Crowther, A., Dème, A., McIntosh, R. J., Mercader, J., Mercader, J., Ogola, C., Power, R. C., Power, R. C., Sawchuk, E., Sawchuk, E. & 16 others, Robertshaw, P., Wilmsen, E. N., Wilmsen, E. N., Petraglia, M., Petraglia, M., Petraglia, M., Ndiema, E., Manthi, F. K., Krause, J., Roberts, P., Roberts, P., Boivin, N., Boivin, N., Boivin, N., Boivin, N. & Schiffels, S., 12 Jun 2020

    Article in Science Advances

  30. Ancient goat genomes reveal mosaic domestication in the Fertile Crescent

    Daly, K., Maisano Delser, P., Mullin, V., Scheu, A., Mattiangeli, V., Teasdale, M. D., Hare, A., Burger, J., Pereira Verdugo, M., Collins, M. J., Kehati, R., Erek, C. M., Bar-Oz, G., Pompanon, F., Cumer, T., Çakirlar, C., Mohaseb, A. F., Decruyenaere, D., Davoudi, H., Çevik, Ö. & 20 others, Rollefson, G., Vigne, J-D., Roya, K., Fathi, H., Beizaee Doost, S., Rahimi Sorkhani, R., Vahdati, A. A., Sauer, E. W., Azizi Kharanaghi, H., Maziar, S., Gasparian, B., Pinhasi, R., Martin, L., Orton, D. C., Arbuckle, B. S., Benecke, N., Manica, A., Kolska Horwitz, L., Mashkour, M. & Bradley, D., 6 Jul 2018

    Article in Science

  31. Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe

    Frantz, L. A. F., Haile, J., Lin, A. T., Scheu, A., Geörg, C., Benecke, N., Alexander, M., Linderholm, A., Mullin, V. E., Daly, K. G., Battista, V. M., Price, M., Gron, K. J., Alexandri, P., Arbogast, R-M., Arbuckle, B., Bӑlӑşescu, A., Barnett, R., Bartosiewicz, L., Baryshnikov, G. & 80 others, Bonsall, C., Borić, D., Boroneanţ, A., Bulatović, J., Çakirlar, C., Carretero, J-M., Chapman, J., Church, M., Crooijmans, R., De Cupere, B., Detry, C., Dimitrijevic, V., Dumitraşcu, V., du Plessis, L., Edwards, C. J., Erek, C. M., Erim-Özdoğan, A., Ervynck, A., Fulgione, D., Gligor, M., Götherström, A., Gourichon, L., Groenen, M. A. M., Helmer, D., Hongo, H., Horwitz, L. K., Irving-Pease, E. K., Lebrasseur, O., Lesur, J., Malone, C., Manaseryan, N., Marciniak, A., Martlew, H., Mashkour, M., Matthews, R., Matuzeviciute, G. M., Maziar, S., Meijaard, E., McGovern, T., Megens, H-J., Miller, R., Mohaseb, A. F., Orschiedt, J., Orton, D., Papathanasiou, A., Pearson, M. P., Pinhasi, R., Radmanović, D., Ricaut, F-X., Richards, M., Sabin, R., Sarti, L., Schier, W., Sheikhi, S., Stephan, E., Stewart, J. R., Stoddart, S., Tagliacozzo, A., Tasić, N., Trantalidou, K., Tresset, A., Valdiosera, C., van den Hurk, Y., Van Poucke, S., Vigne, J-D., Yanevich, A., Zeeb-Lanz, A., Triantafyllidis, A., Gilbert, M. T. P., Schibler, J., Rowley-Conwy, P., Zeder, M., Peters, J., Cucchi, T., Bradley, D. G., Dobney, K., Burger, J., Evin, A., Girdland-Flink, L. & Larson, G., 27 Aug 2019

    Article in Proceedings of the National Academy of Sciences of the United States of America

  32. Ancient proteins from ceramic vessels at Çatalhöyük West reveal the hidden cuisine of early farmers

    Hendy, J. R., Colonese, A. C., Franz, I., Fernandes, R., Fischer, R., Orton, D. C., Lucquin, A. J. A., Spindler, L., Anvari, J., Stroud, E., Biehl, P., Speller, C. F., Boivin, N., Mackie, M., Rakownikow Jersie-Christensen, R., Olsen, J. V., Collins, M. J., Craig, O. E. & Rosenstock, E., 3 Oct 2018

    Article in Nature Communications

  33. Ancient proteins provide evidence of dairy consumption in eastern Africa

    Bleasdale, M., Richter, K. K., Janzen, A., Brown, S., Scott, A., Zech, J., Wang, K., Schiffels, S., Desideri, J., Besse, M., Reinold, J., Saad, M., Babiker, H., Power, R. C., Ndiema, E., Ogola, C., Manthi, F. K., Zahir, M., Petraglia, M., Trachsel, C. & 7 others, Nanni, P., Grossmann, J., Hendy, J., Crowther, A., Roberts, P., Goldstein, S. T. & Boivin, N., 27 Jan 2021

    Article in Nature Communications

  34. Ancient proteins resolve the evolutionary history of Darwin's South American ungulates

    Welker, F., Collins, M. J., Thomas, J. A., Wadsley, M., Brace, S., Cappellini, E., Turvey, S. T., Reguero, M., Gelfo, J. N., Kramarz, A., Burger, J., Thomas-Oates, J., Ashford, D. A., Ashton, P. D., Rowsell, K., Porter, D. M., Kessler, B., Fischer, R., Baessmann, C., Kaspar, S. & 11 others, Olsen, J. V., Kiley, P., Elliott, J. A., Kelstrup, C. D., Mullin, V., Hofreiter, M., Willerslev, E., Hublin, J. J., Orlando, L., Barnes, I. & Macphee, R. D. E., 4 Jun 2015

    Article in Nature

  35. Archaeology, Heritage, and Social Value: Public Perspectives on European Archaeology

    Richards, J. D., Wright, H. E., Kajda, K., Marx, A., Marciniak, A., Salas Rossenbach, K., Pawleta, M., van den Dries, M., Boom, K., Guermandi, M. P., Criado-Boado, F., Barreiro, D., Synnestvedt, A., Kotsakis, K., Kasvikis, K., Theodoroudi, E., Luth, F., Issa, M. & Frase, I., 9 May 2017

    Article in European Journal of Archaeology

  36. Archaeology, Hydrogeology and Geomythology in the Stymphalos Valley

    Walsh, K. J., Brown, A. G., Gourley, R. B. & Scaife, R., 3 May 2017, (E-pub ahead of print)

    Article in Journal of Archaeological Science Reports

  37. Archaeometric study of mortars from the Pisa’s Cathedral Square (Italy)

    Lezzerini, M., Raneri, S., Pagnotta, S., Columbu, S. & Gallello, G., 22 May 2018, (E-pub ahead of print)

    Article in Measurement

  38. Archives of human-dog relationships: Genetic and stable isotope analysis of Arctic fur clothing

    Harris, A., Feuerborn, T., Sinding, M-H., Nottingham, J., Knudsen, R., Rey-Iglesia, A., Schmidt, A. L., Appelt, M., Grønnow, B., Alexander, M. M., Eriksson, G., Dalén, L., Hansen, A. J. & Lidén, K., 17 Jul 2020

    Article in Journal of Anthropological Archaeology

  39. Assessment of different screening methods for selecting palaeontological bone samples for peptide sequencing

    Presslee, S., Penkman, K., Fischer, R., Richards-Slidel, E., Southon, J., Hospitaleche, C. A., Collins, M. & MacPhee, R., 6 Jan 2021

    Article in JOURNAL OF PROTEOMICS

  40. Basin-scale sources and pathways of microplastic that ends up in the Galápagos Archipelago

    van Sebille, E., Delandmeter, P., Schofield, A. J., Hardesty, B. D., Jones, J. & Donnelly, A., 14 Oct 2019

    Article in Ocean Science

  41. Beyond faith: biomolecular evidence for changing urban economies in multi-faith medieval Portugal: A dietary revolution in late medieval Portugal

    Toso, A., Schifano, S., Oxborough, C., McGrath, K., Spindler, L., Castro, A., Evangelista, L., Filipe, V., Gonçalves, M. J., Marques, A., da Silva, I. M., Santos, R., Valente, M. J., McCleery, I. & Alexander, M. M., 10 Jun 2021

    Article in American Journal of Physical Anthropology

  42. Biodiversity Soup II: A bulk-sample metabarcoding pipeline emphasizing error reduction

    Yang, C., Bohmann, K., Wang, X., Cai, W., Wales, N., Ding, Z., Gopalakrishnan, S. & Yu, D. W., 1 May 2021, (E-pub ahead of print)

    Article in Methods in ecology and evolution

  43. Biomolecular insights into North African-related ancestry, mobility and diet in eleventh-century Al-Andalus

    Silva, M., Oteo-García, G., Martiniano, R., Guimarães, J., von Tersch, M., Madour, A., Shoeib, T., Fichera, A., Justeau, P., Foody, M. G. B., McGrath, K., Barrachina, A., Palomar, V., Dulias, K., Yau, B., Gandini, F., Clarke, D. J., Rosa, A., Brehm, A., Flaquer, A. & 13 others, Rito, T., Olivieri, A., Achilli, A., Torroni, A., Gómez-Carballa, A., Salas, A., Bryk, J., Ditchfield, P. W., Alexander, M., Pala, M., Soares, P. A., Edwards, C. J. & Richards, M. B., 13 Sep 2021

    Article in Scientific Reports

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