Search research publications and outputs

  1. 2022
  2. The effects of prenatal smoke exposure on language development- a systematic review

    Peixinho, J., Toseeb, U., Mountford, H. S., Bermudez, I. & Newbury, D. F., 6 May 2022, (E-pub ahead of print)

    Article in Infant and child development

  3. Lake and crannog: A 2500-year palaeoenvironmental record of continuity and change in NE Scotland

    Jones, S., Stratigos, M. J., López-Costas, O., Martínez-Cortizas, A., Mighall, T. & Noble, G., 1 Jun 2022

    Article in Quaternary Science Reviews

  4. Dataset of high-throughput ligand screening against the RNA Packaging Signals regulating Hepatitis B Virus nucleocapsid formation

    Abulwerdi, F., Fatehi Chenar, F., Manfield, I., Le Grice, S., Schneekloth, Jr., J. S., Twarock, R., Stockley, P. G. & Patel, N., 29 Apr 2022, (E-pub ahead of print)

    Article in Data in Brief

  5. Parallel Optimisation of Potency and Pharmacokinetics Leading to the Discovery of a Pyrrole Carboxamide ERK5 Chemical Tool

    Miller, D. C., Reuillon, T., Molyneux, L., Blackburn, T. J., Cook, S., Edwards, N., Endicott, J. A., Golding, B. T., Griffin, R. J., Hardcastle, I. R., Heptinstall, A. B., Lochhead, P., Martin, M. P., Martin, N., Myers, S. M., Newell, D. R., Noble, R., Rigoreau, L. J. M., Thomas, H., Tucker, J. A. & 6 others, Wang, L-Z., Waring, M. J., Wong, A-C., Wedge, S., Noble, M. & Cano, C., 25 Apr 2022, (E-pub ahead of print)

    Article in JOURNAL OF MEDICINAL CHEMISTRY

  6. Sodium accumulation in breast cancer predicts malignancy and treatment response

    James, A. D., Leslie, T. K., Kaggie, J. D., Wiggins, L., Patten, L., Murphy O'Duinn, J., Langer, S., Labarthe, M-C., Riemer, F., Baxter, G., McLean, M. A., Gilbert, F. J., Kennerley, A. J. & Brackenbury, W. J., 25 Apr 2022, (E-pub ahead of print)

    Article in British journal of cancer

  7. A systematic map of demographic data from elephant populations across Africa: implications for poaching and population analyses

    Hauenstein, S., Jassoy, N., Mupepele, A-C., Carroll, T., Kshatriya, M., Beale, C. M. & Dormann, C. F., 19 Apr 2022, (E-pub ahead of print)

    Letter in Mammal Review

  8. Large scale, single-cell FRET-based glucose uptake measurements within heterogeneous populations

    Wollman, A. J. M., Kioumourtzoglou, D., Ward, R., Gould, G. W. & Bryant, N. J., 15 Apr 2022

    Article in iScience

  9. The Leishmania donovani Ortholog of the Glycosylphosphatidylinositol Anchor Biosynthesis Cofactor PBN1 Is Essential for Host Infection

    Roberts, A., Nagar, R., Brandt, C., Harcourt, K., Clare, S., Ferguson, M. A. J. & Wright, G. J., 14 Apr 2022, (Accepted/In press)

    Article in MBio

  10. Critical roles for EGFR and EGFR-HER2 clusters in EGF binding of SW620 human carcinoma cells

    Wollman, A., Fournier, C., Llorente-Garcia, I., Harriman, O., Payne-Dwyer, A. L., Shashkova, S., Zhou, P., Liu, T-C., Quaret, D., Wilding, J., Kusumi, A., Bodmer, W. & Leake, M. C., 11 Apr 2022, (Accepted/In press)

    Article in Journal of the Royal Society Interface

  11. In silico Docking Analysis for Blocking JUNO‐IZUMO1 Interaction Identifies Two Small Molecules that Block in vitro Fertilization

    Stepanenko, N., Wolk, O., Bianchi, E., Wright, G. J., Schachter-Safrai, N., Makedonski, K., Ouro, A., Ben-Meir, A., Buganim, Y. & Goldblum, A., 5 Apr 2022, (E-pub ahead of print)

    Article in Frontiers in cell and developmental biology

  12. Quantification and assessment of methane emissions from offshore oil and gas facilities on the Norwegian continental shelf

    Foulds, A., Allen, G., Shaw, J. T., Bateson, P., Barker, P. A., Huang, L., Pitt, J. R., Lee, J. D., Wilde, S. E., Dominutti, P., Purvis, R. M., Lowry, D., France, J. L., Fisher, R. E., Fiehn, A., Pühl, M., Bauguitte, S. J. B., Conley, S. A., Smith, M. L., Lachlan-Cope, T. & 2 others, Pisso, I. & Schwietzke, S., 4 Apr 2022

    Article in Atmospheric Chemistry and Physics

  13. Reference-Grade Genome and Large Linear Plasmid of Streptomyces rimosus: Pushing the Limits of Nanopore Sequencing

    Slemc, L., Jakše, J., Filisetti, A., Baranasic, D., Rodríguez-García, A., Del Carratore, F., Marino, S. M., Zucko, J., Starcevic, A., Šala, M., Pérez-Bonilla, M., Sánchez-Hidalgo, M., González, I., Reyes, F., Genilloud, O., Springthorpe, V., Goranovič, D., Kosec, G., Thomas, G. H., Lucrezia, D. D. & 2 others, Petković, H. & Tome, M., 4 Apr 2022

    Article in Microbiology spectrum

  14. CRISPR/Cas9-based precision tagging of essential genes in bloodstream form African trypanosomes

    Kovářová, J., Novotná, M., Faria, J., Rico, E., Wallace, C., Zoltner, M., Field, M. C. & Horn, D., 1 Apr 2022, (E-pub ahead of print)

    Article in MOLECULAR AND BIOCHEMICAL PARASITOLOGY

  15. Dysregulation of Hepatitis B Virus Nucleocapsid Assembly in vitro by RNA-binding Small Ligands

    Patel, N., Abulwerdi, F., Fatehi Chenar, F., Manfield, I., Le Grice, S., Schneekloth, Jr., J. S., Twarock, R. & Stockley, P. G., 24 Mar 2022, (E-pub ahead of print)

    Article in Journal of Molecular Biology

  16. Prion-like domains drive CIZ1 assembly formation at the inactive X chromosome

    Sofi, S., Williamson, L., Turvey, G., Scoynes, C., Hurst, C., Godwin, J., Brockdorff, N., Ainscough, J. & Coverley, D. A., 15 Mar 2022, (E-pub ahead of print)

    Article in Journal of Cell Biology

  17. No evidence for trade-offs between bird diversity, yield and water table depth on oil palm smallholdings: implications for tropical peatland landscape restoration

    Warren-Thomas, E. M., Agus, F., Akbar, P. G., Crowson, M., Hamer, K. C., Hariyadi, B., Hodgson, J. A., Kartika, W. D., Lopes, M., Lucey, J. M., Mustaqim, D., Pettorelli, N., Saad, A., Sari, W., Sukma, G., Stringer, L., Ward, C. & Hill, J. K., 14 Mar 2022, (E-pub ahead of print)

    Article in Journal of Applied Ecology

  18. Biochemical and Elemental Composition of Pelagic Sargassum Biomass Harvested across the Caribbean

    Tonon, T., Botelho MacHado, C., Webber, M., Webber, D., Smith, J., Pilsbury, A., Ciceron, F., Herrera-Rodriguez, L., Jimenez, E. M., Suarez, J. V., Ahearn, M., Gonzalez, F. & Allen, M., 11 Mar 2022

    Article in Phycology

  19. Expansion of the 4-(Diethylamino)benzaldehyde Scaffold to Explore the Impact on Aldehyde Dehydrogenase Activity and Antiproliferative Activity in Prostate Cancer

    Ibrahim, A. I. M., Batlle, E., Sneha, S., Jiménez, R., Pequerul, R., Parés, X., Rüngeler, T., Jha, V., Tuccinardi, T., Sadiq, M., Frame, F., Maitland, N. J., Farrés, J. & Pors, K., 10 Mar 2022

    Article in JOURNAL OF MEDICINAL CHEMISTRY

  20. The effect of lithium on the budding yeast Saccharomyces cerevisiae upon stress adaptation

    Reith, P., Braam, S., Welkenhuysen, N., Lecinski, S., Shepherd, J., MacDonald, C., Leake, M. C., Hohmann, S., Shashkova, S. & Cvijovic, M., 7 Mar 2022, (Accepted/In press)

    Article in Microorganisms

  21. Bioaugmentation of pilot-scale slow sand filters can achieve compliant levels for the micropollutant metaldehyde in a real water matrix

    Castro Gutiérrez, V., Pickering, L., Cambronero-Heinrichs, JC., Holden, B., Haley, J., Jarvis, P., Jefferson, B., Helgason, T., Moir, J. & Hassard, F., 1 Mar 2022

    Article in Water research

  22. Induction of APOBEC3-mediated genomic damage in urothelium implicates BK polyomavirus (BKPyV) as a hit-and-run driver for bladder cancer

    Baker, S. C., Mason, A. S., Slip, R., Skinner, K., Macdonald, A., Masood, O., Harris, R. S., Fenton, T. R., Periyasamy, M., Ali, S. & Southgate, J., 22 Feb 2022, (E-pub ahead of print)

    Article in Oncogene

  23. Systematic identification of genes encoding cell surface and secreted proteins that are essential for in vitro growth and infection in Leishmania donovani

    Roberts, A., Ong, H., Clare, S., Brandt, C., Harcourt, K., Franssen, S., Cotton, J., Muller-Sienerth, N. & Wright, G. J., 21 Feb 2022, (Accepted/In press)

    Article in PLOS PATHOGENS

  24. Comparison of model and ground observations finds snowpack and blowing snow both contribute to Arctic tropospheric reactive bromine

    Swanson, W. F., Holmes, C. D., Simpson, W. R., Confer, K., Marelle, L., Thomas, J. L., Jaeglé, L., Alexander, B., Zhai, S., Chen, Q., Wang, X. & Sherwen, T., 16 Feb 2022

    Article in Atmospheric Chemistry and Physics Discussions

  25. Programmable polymorphism of a virus-like particle

    Biela, A. P., Naskalska, A., Fatehi Chenar, F., Twarock, R. & Heddle, J. G., 7 Feb 2022

    Article in Communications Materials

  26. The effect of age, sex, and resource abundance on patterns of rake markings in resident killer whales (Orcinus orca)

    Grimes, C., Brent, L. JN., Weiss, M. N., Franks, D. W., Balcomb, K. C., Ellifrit, D. K., Ellis, S. & Croft, D. P., 24 Jan 2022, (E-pub ahead of print)

    Article in Marine Mammal Science

  27. Integrated miRNA/cytokine/chemokine profiling reveals severity-associated step changes and principal correlates of fatality in COVID-19

    Wilson, J. C., Kealy, D. J., James, S. R., Plowman, T., Newling, K., Jagger, C., Filbey, K., Mann, E., Konkel, J., Menon, M., Knight, S., Simpson, A., Collaborative Group, CIRCO., Prihartadi, A., Forshaw, G., Todd, N., Yates, D., Grainger, J., Hussell, T., Kaye, P. & 2 others, Signoret, N. Y. M. & Lagos, D., 21 Jan 2022

    Article in iScience

  28. Organochlorine contamination enriches virus-encoded metabolism and pesticide degradation associated auxiliary genes in soil microbiomes

    Zheng, X., Jahn, M. T., Sun, M., Friman, V-P., Balcazar, J. L., Wang, J., Shi, Y., Gong, X., Hu, F. & Zhu, Y-G., 17 Jan 2022, (E-pub ahead of print)

    Article in The ISME Journal

  29. TLR2, TLR4 and Protein kinase R (PKR) induced Type I Interferon sustains infection of Leishmania donovani in macrophages

    Torres Dias, B., Goundry, A., Vivarini, A. C., Costa, T. F. R., Mottram, J. C., Gazos Lopes, U. & Lima, A. P. C. A., 6 Jan 2022, (Accepted/In press)

    Article in Frontiers in immunology

  30. 2021
  31. Impact on Arabidopsis growth and stress resistance of depleting the Maf1 repressor of RNA polymerase III

    Blayney, J., Geary, J., Chrisp, R., Violet, J., Barratt, L., Tavukcu, L., Paine, K., Vaistij, F. E., Graham, I. A., Denby, K. & White, B., 15 Dec 2021, (Accepted/In press)

    Article in Gene

  32. Transformations to Regenerative Food Systems- An outline of the FixOurFood project

    Doherty, B., Bryant, M., Denby, K., Fazey, I. R. A., Bridle, S., Hawkes, C., Cain, M., Banwart, S., Collins, L., Pickett, K., Allen, M., Ball, P. D., Gardner, G. E., Carmen, E., Sinclair, M., Kluczkovski, A., Ehgartner, U., Morris, B., James, A., Yap, C. & 2 others, Om, S. & Connolly, A., 12 Dec 2021, (E-pub ahead of print)

    Article in Nutrition Bulletin

  33. Anthropogenic pressures coincide with Neotropical biodiversity hotspots in a flagship butterfly group

    Doré, M., Willmott, K., Leroy, B., Chazot, N., Mallet, J., Freitas, A. V. L., Hall, J. P. W., Lamas, G., Dasmahapatra, K. K., Fontaine, C. & Elias, M., 9 Dec 2021, (E-pub ahead of print)

    Article in Diversity and Distributions

  34. Structural and molecular basis for Cardiovirus 2A protein as a viral gene expression switch

    Hill, C. H., Pekarek, L., Napthine, S., Kibe, A., Firth, A. E., Graham, S. C., Caliskan, N. & Brierley, I., 9 Dec 2021

    Article in Nature Communications

  35. A Non-Canonical Function of Arabidopsis ERECTA Proteins in Gibberellin Signaling

    Davis, S. J., 3 Dec 2021, 51 p. (bioRxiv).

    Research output: Working paperPreprint

  36. Identification of individual root-knot nematodes using low coverage long-read sequencing

    Sellers, G. S., Jeffares, D. C., Lawson, B., Prior, T. & Lunt, D. H., 1 Dec 2021

    Article in PLOS one

  37. Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids

    Bayer, P. E., Scheben, A., Golicz, A. A., Yuan, Y., Faure, S., Lee, H., Chawla, H. S., Anderson, R., Bancroft, I., Raman, H., Lim, Y. P., Robbens, S., Jiang, L., Liu, S., Barker, M. S., Schranz, M. E., Wang, X., King, G. J., Pires, J. C., Chalhoub, B. & 3 others, Snowdon, R. J., Batley, J. & Edwards, D., 30 Nov 2021

    Article in Plant biology

  38. Search for in-band transitions in the candidate superdeformed band in Si 28

    Morris, L., Jenkins, D. G., Harakeh, M. N., Isaak, J., Kobayashi, N., Tamii, A., Adachi, S., Adsley, P., Aoi, N., Bracco, A., Brown, A., Carpenter, M. P., Carroll, J. J., Courtin, S., Crespi, F. C. L., Davies, P. J., Fruet, G., Fang, Y. D., Fujita, H., Gey, G. & 22 others, Hoang, T. H., Ichige, N., Ideguchi, E., Inoue, A., Iwamoto, C., Koike, T., Raju, M. K., Liu, M. L., Montanari, D., Von Neumann-Cosel, P., Noji, S., Ong, H. J., Savran, D., Schmitt, J. M., Sullivan, C., Wasilewska, B., Weinert, M., Werner, V., Yamamoto, Y., Zegers, R. G. T., Zhou, X. H. & Zhu, S., 30 Nov 2021

    Article in Physical Review C

  39. Chromosome segregation in Archaea: SegA– and SegB–DNA complex structures provide insights into segrosome assembly

    Yen, C-Y., Lin, M-G., Chen, B-W., Ng, I. W. L., Read, N., Kabli, A., Wu, C-T., Shen, Y-Y., Chen, C-H., Barilla, D., Sun, Y-J. & Hsiao, C-D., 29 Nov 2021

    Article in Nucleic Acids Research

  40. Candidates for Balancing Selection in Leishmania donovani Complex Parasites

    Grace, C. A., Forrester, S. J., Costa Silva, V., Carvalho, K. S. S., Kilford, H., Chew, Y. P., James, S., Costa, D. L., Mottram, J. C., Costa, C. H. N. & Jeffares, D., 22 Nov 2021, (Accepted/In press)

    Article in Molecular Biology and Evolution

  41. The Rpd3-complex regulates expression of multiple cell surface recycling factors in yeast

    Amoiradaki, K., Bunting, K. R., Paine, K., Ayre, J., Hogg, K., Laidlaw, K. M. E. & MacDonald, C., 19 Nov 2021, (E-pub ahead of print)

    Article in International Journal of Molecular Sciences

  42. Glial Nrf2 signaling mediates the neuroprotection exerted by Gastrodia elata Blume in Lrrk2-G2019S Parkinson's disease

    Lin, Y-E., Lin, C-H., Ho, E-P., Ke, Y-C., Petridi, S., Elliott, C., Sheen, L-Y. & Chien, C-T., 15 Nov 2021, (E-pub ahead of print)

    Article in eLife

  43. Complex basis of hybrid female sterility and Haldane's rule in Heliconius butterflies: Z-linkage and epistasis

    Rosser, N. S., Edelman, N., Queste, L., Nelson, M., Seixas, F., Dasmahapatra, K. K. & Mallet, J., 14 Nov 2021, (E-pub ahead of print)

    Article in Molecular Ecology

  44. Targeted therapy for LIMD1-deficient non-small cell lung cancer subtypes

    Davidson, K., Grevitt, P., Contreras-Gerenas, M. F., Bridge, K. S., Hermida, M., Shah, K. M., Mardakheh, F. K., Stubbs, M., Burke, R., Casado, P., Cutillas, P. R., Martin, S. A. & Sharp, T. V., 11 Nov 2021

    Article in Cell death & disease

  45. Investigating molecular mechanisms of 2A-stimulated ribosomal pausing and frameshifting in Theilovirus

    Hill, C. H., Cook, G. M., Napthine, S., Kibe, A., Brown, K., Caliskan, N., Firth, A. E., Graham, S. C. & Brierley, I., 9 Nov 2021

    Article in Nucleic Acids Research

  46. Characterisation of the enzyme transport path between shipworms and their bacterial symbionts

    Pesante, G., Sabbadin, F., Elias, L., Steele-King, C., Shipway, J. R., Dowle, A., Li, Y., Busse-Wicher, M., Dupree, P., Besser, K., Cragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 1 Nov 2021

    Article in BMC Biology

  47. Cyanidiophyceae (Rhodophyta) tolerance to precious metals: metabolic response to Cl4K2Pd and AuCl4K

    Sirakov, M., Palmieri, M. P., Iovinella, M., Davis, S. J., Petriccione, M., Di Cicco, M. R., De Stefano, M. & Ciniglia, C., 29 Oct 2021, (Accepted/In press)

    Article in Plants

  48. Measurement of Compton scattering at MAMI for the extraction of the electric and magnetic polarizabilities of the proton

    (A2 Collaboration at MAMI), 29 Oct 2021, arXiv, 7 p.

    Research output: Working paperPreprint

  49. Accuracy and Power Analysis of Social Networks Built From Count Data

    Hart, J. D. A., Franks, D. W., Brent, L. J. N. & Weiss, M. N., 16 Oct 2021, (E-pub ahead of print)

    Article in Methods in ecology and evolution

  50. Plasmid fitness costs are caused by specific genetic conflicts enabling resolution by compensatory mutation

    Hall, J. P. J., Wright, R., Harrison, E., Muddiman, K. J., Wood, A. J., Paterson, S. & Brockhurst, M., 13 Oct 2021

    Article in PLoS Biol.

  51. Early reduction in PD-L1 expression predicts faster treatment response in human cutaneous leishmaniasis

    Dey, N. S., Senaratne, S., Somaratne, V., Madarasinghe, N. P., Seneviratne, B., Forrester, S., Montes de Oca, M., Reis, L. C., Moulik, S., Walrad, P. B., Chatterjee, M., Goto, H., Wickremasinghe, R., Lagos, D., Kaye, P. M. & Ranasinghe, S., 5 Oct 2021, (E-pub ahead of print)

    Article in Journal of Clinical Investigation

  52. The genome of the zoonotic malaria parasite Plasmodium simium reveals adaptations to host switching

    Mourier, T., de Alvarenga, D. A. M., Kaushik, A., de Pina-Costa, A., Douvropoulou, O., Guan, Q., Guzmán-Vega, F. J., Forrester, S., de Abreu, F. V. S., Júnior, C. B., de Souza Junior, J. C., Moreira, S. B., Hirano, Z. M. B., Pissinatti, A., Ferreira-da-Cruz, M. D. F., de Oliveira, R. L., Arold, S. T., Jeffares, D. C., Brasil, P., de Brito, C. F. A. & 3 others, Culleton, R., Daniel-Ribeiro, C. T. & Pain, A., 1 Oct 2021

    Article in BMC Biology

  53. Ozone production and precursor emission from wildfires in Africa

    Lee, J. D., Squires, F. A., Sherwen, T., Wilde, S. E., Cliff, S. J., Carpenter, L. J., Hopkins, J. R., Bauguitte, S. J., Reed, C., Barker, P., Allen, G., Bannan, T. J., Matthews, E., Mehra, A., Percival, C., Heard, D. E., Whalley, L. K., Ronnie, G. V., Seldon, S., Ingham, T. & 4 others, Keller, C. A., Knowland, K. E., Nisbet, E. G. & Andrews, S., 23 Sep 2021

    Article in Environmental Science: Atmospheres

  54. Introduction of probiotic bacterial consortia promotes plant growth via impacts on the resident rhizosphere microbiome

    Hu, J., Yang, T., Friman, V-P., Kowalchuk, G. A., Hautier, Y., Li, M., Wei, Z., Xu, Y., Shen, Q. & Jousset, A., 21 Sep 2021, (Accepted/In press)

    Article in Proceedings of the Royal Society B

  55. Species Diversity and Phylogenetic Relationships of Olive Lace Bugs (Hemiptera: Tingidae) Found in South Africa

    Hlaka, V., Guilbert, É., Smit, C., van Noort, S., Allsopp, E., Langley, J. & van Asch, B., 15 Sep 2021

    Article in Insects

  56. R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements

    Ellis, D. A., Reyes-Martín, F., Rodríguez-López, M., Cotobal, C., Sun, X. M., Saintain, Q., Jeffares, D. C., Marguerat, S., Tallada, V. A. & Bähler, J., 31 Aug 2021

    Article in PLoS Genetics

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