Search research publications and outputs

  1. 2020
  2. Diversity of endogenous Avian Leukosis Virus subgroup E (ALVE) insertions in indigenous chickens

    Mason, A. S., Miedzinska, K., Kebede, A., Bamidele, O., Al-Jumaili, A. S., Dessie, T., Hanotte, O. & Smith, J., 26 May 2020, (Accepted/In press)

    Article in Genetics Selection Evolution

  3. Making messy data work for conservation

    Dobson, ADM., Milner-Gulland, EJ., Aebischer, N. J., Beale, C. M., Brozovic, R., Coals, P., Critchlow, R., Dancer, A., Greve, M., Hinsley, A., Ibbett, H., Johnston, A., Kuiper, T., Le Comber, S., Mahood, S. P., Moore, J. F., Nilsen, E. B., Pocock, M. J. O., Quinn, A., Travers, H. & 3 others, Wilfred, P., Wright, J. & Keane, A., 22 May 2020

    Article in One Earth

  4. The evolutionary origins of the cat attractant nepetalactone in catnip

    Lichman, B. R., Godden, G., Hamilton, J., Palmer, L., Kamileen, M. O., Zhao, D., Vaillancourt, B., Wood, J. C., Sun, M., Kinser, T. J., Henry, L. K., Rodriguez-Lopez, C., Dudareva, N., Soltis, D. E., Soltis, P., Buell, C. R. & O'Connor, S. E., 13 May 2020

    Article in Science Advances

  5. Single-cell analyses reveal aberrant pathways for megakaryocyte-biased hematopoiesis in myelofibrosis and identify mutant clone-specific targets

    Psaila, B., Wang, G., Rodriguez Meira, A., Li, R., Heuston, E. F., Murphy, L., Yee, D., Hitchcock, I. S., Sousos, N., O'Sullivan, J., Anderson, S., Senis, Y. A., Weinberg, O. K., Calicchio, M. L., Iskander, D., Royston, D., Milojkovic, D., Roberts, I., Bodine, D. M., Thongjuea, S. & 1 others, Mead, A. J., 7 May 2020

    Article in Molecular Cell

  6. PRMT7 regulates RNA-binding capacity and protein stability in Leishmania parasites

    Ferreira, T. R., Dowle, A. A., Parry, E., Alves-Ferreira, E. V. C., Hogg, K., Kolokousi, F., Larson, T. R., Plevin, M. J., Cruz, A. K. & Walrad, P. B., 4 May 2020

    Article in Nucleic Acids Research

  7. Assessment of Algerian Maize Populations for Saccharification and Nutritive Value

    López-Malvar, A., Djemel, A., Gomez, L. D., Santiago, R. & Revilla, P., 2 May 2020

    Article in Agronomy

  8. Two speeds of increasing milk feeds for very preterm or very low-birthweight infants: the SIFT RCT

    Dorling, J., Hewer, O., Hurd, M., Bari, V., Bosiak, B., Bowler, U., King, A., Linsell, L., Murray, D., Omar, O., Partlett, C., Rounding, C., Townend, J., Abbott, J., Berrington, J., Boyle, E., Embleton, N., Johnson, S., Leaf, A., McCormick, K. & 9 others, McGuire, W., Patel, M., Roberts, T., Stenson, B., Tahir, W., Monahan, M., Richards, J., Rankin, J. & Juszczak, E., 1 Apr 2020

    Article in Health technology assessment (Winchester, England)

  9. B-cell Zone Reticular Cell Microenvironments Shape CXCL13 Gradient Formation

    Coles, M. C., O'Toole, P. J., Lacey, C. J. N., Cosgrove, J., Novkovic, M., Albrecht, S., Zhou, Z., Pikor, N. B., Onder, L., Morbe, U., Cupovic, J., Miller, H., Alden, K. J., Thuery, A. L. M. I., Pinter, R., Jarrett, S., Taylor, E., Venetz, D., Heller, M., Uguccioni, M. & 11 others, Legler, D. F., Coatesworth, A., Polak, W. G., Cupedo, T., Manoury, B., Thelen, M., Stein, J. V., Wolf, M., Leake, M. C., Timmis, J. & Ludewig, B., 13 Mar 2020, (Accepted/In press)

    Article in Nature Communications

  10. Paradoxical activation of the protein kinase-transcription factor ERK5 by ERK5 kinase inhibitors

    Lochhead, P., Tucker, J. A., Tatum, N., Wang, J., Oxley, D., Kidger, A., Johnson, V., Cassidy, M., Gray, N., Noble, M. E. M. & Cook, S., 13 Mar 2020

    Article in Nature Communications

  11. Longitudinal cytokine profiling identifies GRO-α and EGF as potential biomarkers of disease progression in Essential Thrombocythemia

    Øbro, N. F., Grinfeld, J., Belmonte, M., Irvine, M., Shepherd, M. S., Rao, T. N., Karow, A., Riedel, L. M., Harris, O. B., Baxter, E. J., Nangalia, J., Godfrey, A., Harrison, C. N., Li, J., Skoda, R. C., Campbell, P. J., Green, A. R. & Kent, D. G., 3 Mar 2020, (Accepted/In press)

    Article in HemaSphere

  12. Emerging illegal wildlife trade issues: a global horizon scan

    Esmail, N., Wintle, B. C., 't Sas-Rolfes, M., Athanas, A., Beale, C. M., Bending, Z., Dai, R., Fabinyi, M., Gluszek, S., Haenlein, C., Harrington, L. A., Hinsley, A., Karivki, K., Lam, J., Markus, M., Paudel, K., Shukhova, S., Sutherland, W. J., Verissimo, D., Wang, Y. & 5 others, Waugh, J., Wetton, J. H., Workman, C., Wright, J. & Milner-Gulland, E., 29 Feb 2020, (Accepted/In press)

    Article in Conservation Letters

  13. Older LGBT+ health inequalities in the UK: setting a research agenda

    Westwood, S., Willis, P., Fish, J., Hafford-Letchfield, T., Semlyen, J., King, A., Beach, B., Almack, K., Kneale, D., Toze, M. & Becares, L., 21 Feb 2020

    Review article in Journal of Epidemiology & Community Health

  14. Anti-Trypanosomal Proteasome Inhibitors Cure Hemolymphatic and Meningoencephalic Murine Infection Models of African Trypanosomiasis

    Rao, S. P. S., Lakshminarayana, S. B., Jiricek, J., Kaiser, M., Ritchie, R., Myburgh, E., Supek, F., Tuntland, T., Nagle, A., Molteni, V., Mäser, P., Mottram, J. C., Barrett, M. P. & Diagana, T. T., 17 Feb 2020

    Article in Tropical medicine and infectious disease

  15. The quail genome: insights into social behaviour, seasonal biology and infectious disease response

    Mason, A. S., Morris, K. M., Boitard, S., Hindle, M. M., Burt, D. W., Danner, A. F., Eory, L., Forrest, H. L., Gourichon, D., Gros, J., Hillier, L., Jaffredo, T., Khoury, H., Lansford, R., Leterrier, C., Loudon, A., Meddle, S. L., Minvielle, F., Minx, P., Pitel, F. & 8 others, Seiler, J. P., Shimmura, T., Tomlinson, C., Vignal, A., Webster, R. G., Yoshimura, T., Warren, W. C. & Smith, J., 12 Feb 2020

    Article in BMC Biology

  16. Prevalent pH Controls the Capacity of Galdieria maxima to Use Ammonia and Nitrate as a Nitrogen Source

    Davis, S. J., Iovinella, M., Carbone, D. A., Cioppa, D., Innangi, M., Esposito, S. & Ciniglia, C., 11 Feb 2020

    Article in Plant Physiology and Metabolism

  17. Mechanism of homodimeric cytokine receptor activation and dysregulation by oncogenic mutations

    Wilmes, S., Hafer, M., Vuorio, J., Tucker, J. A., Winkelmann, H., Lochte, S., Stanly, T. A., Pulgar Prieto, K. D., Poojari, C., Sharma, V., Richter, C. P., Kurre, R., Hubbard, S. R., Garcia, K. C., Moraga, I., Vattulainen, I., Hitchcock, I. S. & Piehler, J., 7 Feb 2020

    Article in Science

  18. Trypanosoma brucei ATR Links DNA Damage Signaling during Antigenic Variation with Regulation of RNA Polymerase I-Transcribed Surface Antigen

    Black, J. A., Crouch, K., Lemgruber, L., Lapsley, C., Dickens, N. J., Tosi, L. R. O., Mottram, J. C. & McCulloch, R., 21 Jan 2020

    Article in Cell reports

  19. 2019
  20. Postreproductive Killer Whale Grandmothers Improve the Survival of their Grandoffspring

    Nattrass, S., Croft, D. P., Ellis, S., Cant, M. A., Weiss, M. N., Wright, B., Stredulinsky, E., Doniol-Valcroze, T., Ford, J. K. B., Balcomb, K. C. & Franks, D. W., 26 Dec 2019

    Article in Proceedings of the National Academy of Sciences of the United States of America

  21. Robertkochia solimangrovi sp. nov., isolated from mangrove soil, and emended description of the genus Robertkochia

    Quan Lam, M., Vodovnik, M., Zorec, M., Chen, S. J., Mau Goh, K., Yahya, A., Salleh, M. M., Ibrahim, Z., Tokiman, L., McQueen Mason, S. J., Bruce, N. C. & Chong, C. S., 17 Dec 2019

    Article in International journal of systematic and evolutionary microbiology

  22. The Rib domain: Defining the remarkable structural malleability of a bacterial surface protein domain implicated in infection

    Whelan, F., Lafita, A., Griffiths, S. C., Cooper, R., Whittingham, J. L., Turkenburg, J. P., Manfield, I. W., St John, A. N., Paci, E., Bateman, A. & Potts, J. R., 9 Dec 2019

    Article in Proceedings of the National Academy of Sciences of the United States of America

  23. PAFway: pairwise associations between functional annotations in biological networks and pathways

    Mahjoub, M. & Ezer, D., 6 Dec 2019, (Submitted).

    Research output: Working paper

  24. Going to extremes: The Goldilocks/Lagom principle and data distribution

    Leese, H. J., Sathyapalan, T., Allgar, V., Brison, D. R. & Sturmey, R., 27 Nov 2019

    Article in BMJ Open

  25. Fine structure in the α decay of 223U

    Sun, M. D., Liu, Z., Huang, T. H., Zhang, W. Q., Andreyev, A. N., Ding, B., Wang, J. G., Liu, X. Y., Lu, H. Y., Hou, D. S., Gan, Z. G., Ma, L., Yang, H. B., Zhang, Z. Y., Yu, L., Jiang, J., Wang, K. L., Wang, Y. S., Liu, M. L., Li, Z. H. & 12 others, Li, J., Wang, X., Feng, A. H., Lin, C. J., Sun, L. J., Ma, N. R., Zuo, W., Xu, H. S., Zhou, X. H., Xiao, G. Q., Qi, C. & Zhang, F. S., 14 Nov 2019

    Article in Physics Letters B

  26. The Production and Fate of Volatile Organosulfur Compounds in Sulfidic and Ferruginous Sediment

    Wilkening, J., Turchyn, A. V., Redeker, K. R., Mills, J. V., Antler, G., Carrion, O. & Todd, J. D., 13 Nov 2019

    Article in Journal of Geophysical Research G: Biogeosciences

  27. The Evening Complex establishes repressive chromatin domains via H2A.Z deposition

    Tong, M., Lee, K., Ezer, D., Cortijo, S., Jung, J., Charoensawan, V., Box, M., Jaeger, K., Takahashi, N., Mas, P., Wigge, P. & Seo, P., 11 Nov 2019

    Article in Plant Physiology

  28. Divergent tree seedling communities indicate different trajectories of change among rainforest remnants

    Stride, G. L., Thomas, C., Benedick, S., Hodgson, J. A., Jelling, A., Senior, M. J. M. & Hill, J. K., 1 Nov 2019

    Article in Diversity and Distributions

  29. Genomic architecture and introgression shape a butterfly radiation

    Edelman, N., Frandsen, P., Miyagi, M., Clavijo, B., Davey, J. W., Dikow, R., García-Accinelli, G., Van Bellegham, S. M., Patterson, N., Neafsey, D. E., Challis, R. J., Kumar, S., Moreira, G. R. P., Salazar, C., Chouteau, M., Counterman, B. A., Papa, R., Blaxter, M., Reed, R. D., Dasmahapatra, K. K. & 9 others, Kronforst, M. R., Joron, M., Jiggins, C. D., McMillan, W. O., Di Palma, F., Blumberg, A. J., Wakeley, J., Jaffe, D. & Mallet, J., 1 Nov 2019

    Article in Science

  30. Industry-Informed Workshops to Develop Graduate Skill Sets in the Circular Economy Using Systems Thinking

    Summerton, L., Clark, J. H., Hurst, G. A., Ball, P. D., Rylott, E. L., Carslaw, N., Creasey, J., Murray, J., Whitford, J., Dobson, B., Sneddon, H. F., Ross, J., Metcalf, P. & McElroy, C. R., 1 Nov 2019

    Article in JOURNAL OF CHEMICAL EDUCATION

  31. Climate-induced phenology shifts linked to range expansions in species with multiple reproductive cycles per year

    MacGregor, C. J., Thomas, C., Roy, D. B., Beaumont, M., James, B., Brereton, T., Bridle, J. R., Dytham, C., Fox, R., Gotthard, K., Hoffman, A., Martin, G., Middlebrook, I., Nylin, S., Platts, P. J., Rasteiro, R., Saccheri, I., Villoutreix, R., Wheat, C. & Hill, J. K., 24 Oct 2019

    Article in Nature Communications

  32. Mining the biomass deconstructing capabilities of rice yellow stem borer symbionts

    Singh, R., Bennett, J. P., Gupta, M., Sharma, M., Eqbal, D., Alessi, A., Dowle, A., McQueen Mason, S. J., Bruce, N. C. & Yazdani, S. S., 24 Oct 2019, (Accepted/In press)

    Article in Biotechnology for biofuels

  33. Elucidation of a sialic acid metabolism pathway in mucus-foraging Ruminococcus gnavus unravels mechanisms of bacterial adaptation to the gut

    Bell, A., Brunt, J., Crost, E., Vaux, L., Nepravishta, R., Owen, C. D., Latousakis, D., Xiao, A., Li, W., Chen, X., Walsh, M. A., Claesen, J., Angulo, J., Thomas, G. H. & Juge, N., 21 Oct 2019

    Article in Nature Microbiology

  34. Reviving rare chicken breeds using genetically engineered sterility in surrogate host birds

    Woodcock, M. E., Gheyas, A. A., Mason, A. S., Nandi, S., Taylor, L., Sherman, A., Smith, J., Burt, D. W., Hawken, R. & McGrew, M. J., 15 Oct 2019

    Article in Proceedings of the National Academy of Sciences of the United States of America

  35. RRM adjacent TARDBP mutations disrupt RNA binding and enhance TDP-43 proteinopathy

    Chen, H-J., Topp, S. D., Hui, H. S., Zacco, E., Katarya, M., McLoughlin, C., King, A. D., Smith, B. N., Troakes, C., Pastore, A. & Shaw, C. E., 11 Oct 2019

    Article in Brain

  36. CHC22 clathrin mediates traffic from early secretory compartments for human GLUT4 pathway biogenesis

    Camus, S. M., Camus, M. D., Figueras-Novoa, C., Boncompain, G., Sadacca, L. A., Esk, C., Bigot, A., Gould, G. W., Kioumourtzoglou, D., Perez, F., Bryant, N. J., Mukherjee, S. & Brodsky, F. M., 9 Oct 2019, (Accepted/In press)

    Article in Journal of Cell Biology

  37. Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny

    Cappellini, E., Welker, F., Pandolfi, L., Ramos-Madrigal, J., Samodova, D., Rüther, P. L., Fotakis, A. K., Lyon, D., Moreno-Mayar, J. V., Bukhsianidze, M., Rakownikow Jersie-Christensen, R., Mackie, M., Ginolhac, A., Ferring, R., Tappen, M., Palkopoulou, E., Dickinson, M. R., Stafford, T. W., Chan, Y. L., Götherström, A. & 23 others, Nathan, S. K. S. S., Heintzman, P. D., Kapp, J. D., Kirillova, I., Moodley, Y., Agusti, J., Kahlke, R. D., Kiladze, G., Martínez-Navarro, B., Liu, S., Sandoval Velasco, M., Sinding, M. H. S., Kelstrup, C. D., Allentoft, M. E., Orlando, L., Penkman, K., Shapiro, B., Rook, L., Dalén, L., Gilbert, M. T. P., Olsen, J. V., Lordkipanidze, D. & Willerslev, E., 3 Oct 2019

    Article in Nature

  38. Anthropogenic modifications to fire regimes in the wider Serengeti-Mara ecosystem

    Probert, J., Parr, K., Holdo, R. M., Anderson, T., Archibald, S., Courtney-Mustaphi, C. J., Dobson, A., Donaldson, J. E., Hempson, G. P., Hopcraft, G., Morrison, T. A. & Beale, C. M., 1 Oct 2019

    Article in Global Change Biology

  39. Genome-wide selection footprints and deleterious variations in young Asian allotetraploid rapeseed

    Zou, J., Mao, L., Qiu, J., Wang, M., Jia, L., Wu, D., He, Z., Chen, M., Shen, Y., Shen, E., Huang, Y., Li, R., Hu, D., Shi, L., Wang, K., Zhu, Q-H., Ye, C., Bancroft, I., King, G. J., Meng, J. & 1 others, Fan, L., 1 Oct 2019

    Article in Plant biotechnology journal

  40. Neutrophil elastase promotes Leishmania donovani infection via interferon-β

    Torres Dias, B., Teixeira, K. L., Godinho, J. P., Faria, M. S., Calegari-Silva, T., Mukhtar, M. M., Gazos Lopes, U., Mottram, J. C. & Lima, A. P. C. A., 1 Oct 2019

    Article in The FASEB Journal

  41. The variable toxicity of silver ions in cell culture media

    Souter, P. M., Cunningham, J. C., Horner, A. & Genever, P. G., 1 Oct 2019

    Article in Toxicology in vitro

  42. Initial Soil Microbiome Composition and Functioning Predetermine Future Plant Health

    Wei, Z., Gu, Y., Friman, V-P., Kowalchuk, G., Xu, Y., Shen, Q. & Jousset, A., 25 Sep 2019

    Article in Science Advances

  43. Macrophage migration inhibitory factor (MIF) is essential for Type 2 effector cell immunity to an intestinal helminth parasite

    Filbey, K. J., Varyani, F., Harcus, Y., Hewitson, J. P., Smyth, D. J., McSorley, H. J., Ivens, A., Nylén, S., Rottenberg, M., Loser, S. & Maizels, R. M., 23 Sep 2019, (Accepted/In press)

    Article in Frontiers in immunology

  44. The Role of Silicon in Antiherbivore Phytohormonal Signalling

    Hall, C. R., Waterman, J. M., Vendegeer, R. K., Hartley, S. E. & Johnson, S. N., 18 Sep 2019

    Article in Frontiers in Plant Science

  45. Outcome measures in a combined exercise rehabilitation programme for adults with COPD and chronic heart failure: A preliminary stakeholder consensus event

    Jones, A. V., Evans, R. A., Man, W. D-C., Bolton, C. E., Breen, S., Doherty, P. J., Gardiner, N., Houchen-Wolloff, L., Hurst, J. R., Jolly, K., Maddocks, M., Quint, J. K., Revitt, O., Sherar, L. B., Taylor, R. S., Watt, A., Wingham, J., Yorke, J. & Singh, S. J., 16 Sep 2019

    Article in Chronic respiratory disease

  46. Identification of a novel orally bioavailable ERK5 inhibitor with selectivity over p38α and BRD4

    Tucker, J. A., Myers, S. M., Miller, D. C., Molyneux, L., Arasta, M., Bawn, R. H., Blackburn, T. J., Cook, S. J., Edwards, N., Endicott, J. A., Golding, B. T., Griffin, R. J., Hammonds, T., Hardcastle, I. R., Harnor, S. J., Heptinstall, A. B., Lochhead, P. A., Martin, M. P., Martin, N. C., Newell, D. R. & 10 others, Owen, P. J., Pang, L. C., Reuillon, T., Rigoreau, L. J. M., Thomas, H. D., Wang, L-Z., Wong, A-C., Noble, M. E. M., Wedge, S. R. & Cano, C., 15 Sep 2019

    Article in European Journal of Medicinal Chemistry

  47. Loss of Janus Associated Kinase1 alters urothelial cell functionand facilitates the development of bladder cancer

    Daza-Cajigal, V., Albuquerque, A., Pearson, J. F., Hinley, J. S., Mason, A. S., Stahlschmidt, J., Thrasher, A. J., Mishra, V., Southgate, J. & Burns, S. O., 10 Sep 2019

    Article in Frontiers in immunology

  48. Ancestral Admixture Is the Main Determinant of Global Biodiversity in Fission Yeast

    Tusso, S., Nieuwenhuis, B. P. S., Sedlazeck, F. J., Davey, J. W., Jeffares, D. C. & Wolf, J. B. W., 9 Sep 2019

    Article in Molecular Biology and Evolution

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