Search research publications and outputs

  1. 2022
  2. Integrated miRNA/cytokine/chemokine profiling reveals severity-associated step changes and principal correlates of fatality in COVID-19

    Wilson, J. C., Kealy, D. J., James, S. R., Plowman, T., Newling, K., Jagger, C., Filbey, K., Mann, E., Konkel, J., Menon, M., Knight, S., Simpson, A., Collaborative Group, CIRCO., Prihartadi, A., Forshaw, G., Todd, N., Yates, D., Grainger, J., Hussell, T., Kaye, P. & 2 others, Signoret, N. Y. M. & Lagos, D., 21 Jan 2022

    Article in iScience

  3. TLR2, TLR4 and Protein kinase R (PKR) induced Type I Interferon sustains infection of Leishmania donovani in macrophages

    Torres Dias, B., Goundry, A., Vivarini, A. C., Costa, T. F. R., Mottram, J. C., Gazos Lopes, U. & Lima, A. P. C. A., 6 Jan 2022, (Accepted/In press)

    Article in Frontiers in immunology

  4. 2021
  5. Impact on Arabidopsis growth and stress resistance of depleting the Maf1 repressor of RNA polymerase III

    Blayney, J., Geary, J., Chrisp, R., Violet, J., Barratt, L., Tavukcu, L., Paine, K., Vaistij, F. E., Graham, I. A., Denby, K. & White, B., 15 Dec 2021, (Accepted/In press)

    Article in Gene

  6. Transformations to Regenerative Food Systems- An outline of the FixOurFood project

    Doherty, B., Bryant, M., Denby, K., Fazey, I. R. A., Bridle, S., Hawkes, C., Cain, M., Banwart, S., Collins, L., Pickett, K., Allen, M., Ball, P. D., Gardner, G. E., Carmen, E., Sinclair, M., Kluczkovski, A., Ehgartner, U., Morris, B., James, A., Yap, C. & 2 others, Om, S. & Connolly, A., 12 Dec 2021, (E-pub ahead of print)

    Article in Nutrition Bulletin

  7. Anthropogenic pressures coincide with Neotropical biodiversity hotspots in a flagship butterfly group

    Doré, M., Willmott, K., Leroy, B., Chazot, N., Mallet, J., Freitas, A. V. L., Hall, J. P. W., Lamas, G., Dasmahapatra, K. K., Fontaine, C. & Elias, M., 9 Dec 2021, (E-pub ahead of print)

    Article in Diversity and Distributions

  8. A Non-Canonical Function of Arabidopsis ERECTA Proteins in Gibberellin Signaling

    Davis, S. J., 3 Dec 2021, 51 p. (bioRxiv).

    Research output: Working paperPreprint

  9. Identification of individual root-knot nematodes using low coverage long-read sequencing

    Sellers, G. S., Jeffares, D. C., Lawson, B., Prior, T. & Lunt, D. H., 1 Dec 2021

    Article in PLOS one

  10. Search for in-band transitions in the candidate superdeformed band in Si 28

    Morris, L., Jenkins, D. G., Harakeh, M. N., Isaak, J., Kobayashi, N., Tamii, A., Adachi, S., Adsley, P., Aoi, N., Bracco, A., Brown, A., Carpenter, M. P., Carroll, J. J., Courtin, S., Crespi, F. C. L., Davies, P. J., Fruet, G., Fang, Y. D., Fujita, H., Gey, G. & 22 others, Hoang, T. H., Ichige, N., Ideguchi, E., Inoue, A., Iwamoto, C., Koike, T., Raju, M. K., Liu, M. L., Montanari, D., Von Neumann-Cosel, P., Noji, S., Ong, H. J., Savran, D., Schmitt, J. M., Sullivan, C., Wasilewska, B., Weinert, M., Werner, V., Yamamoto, Y., Zegers, R. G. T., Zhou, X. H. & Zhu, S., 30 Nov 2021

    Article in Physical Review C

  11. Chromosome segregation in Archaea: SegA– and SegB–DNA complex structures provide insights into segrosome assembly

    Yen, C-Y., Lin, M-G., Chen, B-W., Ng, I. W. L., Read, N., Kabli, A., Wu, C-T., Shen, Y-Y., Chen, C-H., Barilla, D., Sun, Y-J. & Hsiao, C-D., 29 Nov 2021

    Article in Nucleic Acids Research

  12. Candidates for Balancing Selection in Leishmania donovani Complex Parasites

    Grace, C. A., Forrester, S. J., Costa Silva, V., Carvalho, K. S. S., Kilford, H., Chew, Y. P., James, S., Costa, D. L., Mottram, J. C., Costa, C. H. N. & Jeffares, D., 22 Nov 2021, (Accepted/In press)

    Article in Molecular Biology and Evolution

  13. The Rpd3-complex regulates expression of multiple cell surface recycling factors in yeast

    Amoiradaki, K., Bunting, K. R., Paine, K., Ayre, J., Hogg, K., Laidlaw, K. M. E. & MacDonald, C., 19 Nov 2021, (E-pub ahead of print)

    Article in International Journal of Molecular Sciences

  14. Glial Nrf2 signaling mediates the neuroprotection exerted by Gastrodia elata Blume in Lrrk2-G2019S Parkinson's disease

    Lin, Y-E., Lin, C-H., Ho, E-P., Ke, Y-C., Petridi, S., Elliott, C., Sheen, L-Y. & Chien, C-T., 15 Nov 2021, (E-pub ahead of print)

    Article in eLife

  15. Complex basis of hybrid female sterility and Haldane's rule in Heliconius butterflies: Z-linkage and epistasis

    Rosser, N. S., Edelman, N., Queste, L., Nelson, M., Seixas, F., Dasmahapatra, K. K. & Mallet, J., 14 Nov 2021, (E-pub ahead of print)

    Article in Molecular Ecology

  16. Targeted therapy for LIMD1-deficient non-small cell lung cancer subtypes

    Davidson, K., Grevitt, P., Contreras-Gerenas, M. F., Bridge, K. S., Hermida, M., Shah, K. M., Mardakheh, F. K., Stubbs, M., Burke, R., Casado, P., Cutillas, P. R., Martin, S. A. & Sharp, T. V., 11 Nov 2021

    Article in Cell death & disease

  17. Investigating molecular mechanisms of 2A-stimulated ribosomal pausing and frameshifting in Theilovirus

    Hill, C. H., Cook, G. M., Napthine, S., Kibe, A., Brown, K., Caliskan, N., Firth, A. E., Graham, S. C. & Brierley, I., 9 Nov 2021

    Article in Nucleic Acids Research

  18. Cyanidiophyceae (Rhodophyta) tolerance to precious metals: metabolic response to Cl4K2Pd and AuCl4K

    Sirakov, M., Palmieri, M. P., Iovinella, M., Davis, S. J., Petriccione, M., Di Cicco, M. R., De Stefano, M. & Ciniglia, C., 29 Oct 2021, (Accepted/In press)

    Article in Plants

  19. Accuracy and Power Analysis of Social Networks Built From Count Data

    Hart, J. D. A., Franks, D. W., Brent, L. J. N. & Weiss, M. N., 16 Oct 2021, (E-pub ahead of print)

    Article in Methods in ecology and evolution

  20. Plasmid fitness costs are caused by specific genetic conflicts enabling resolution by compensatory mutation

    Hall, J. P. J., Wright, R., Harrison, E., Muddiman, K. J., Wood, A. J., Paterson, S. & Brockhurst, M., 13 Oct 2021

    Article in PLoS Biol.

  21. Early reduction in PD-L1 expression predicts faster treatment response in human cutaneous leishmaniasis

    Dey, N. S., Senaratne, S., Somaratne, V., Madarasinghe, N. P., Seneviratne, B., Forrester, S., Montes de Oca, M., Reis, L. C., Moulik, S., Walrad, P. B., Chatterjee, M., Goto, H., Wickremasinghe, R., Lagos, D., Kaye, P. M. & Ranasinghe, S., 5 Oct 2021, (E-pub ahead of print)

    Article in Journal of Clinical Investigation

  22. The genome of the zoonotic malaria parasite Plasmodium simium reveals adaptations to host switching

    Mourier, T., de Alvarenga, D. A. M., Kaushik, A., de Pina-Costa, A., Douvropoulou, O., Guan, Q., Guzmán-Vega, F. J., Forrester, S., de Abreu, F. V. S., Júnior, C. B., de Souza Junior, J. C., Moreira, S. B., Hirano, Z. M. B., Pissinatti, A., Ferreira-da-Cruz, M. D. F., de Oliveira, R. L., Arold, S. T., Jeffares, D. C., Brasil, P., de Brito, C. F. A. & 3 others, Culleton, R., Daniel-Ribeiro, C. T. & Pain, A., 1 Oct 2021

    Article in BMC Biology

  23. Ozone production and precursor emission from wildfires in Africa

    Lee, J. D., Squires, F. A., Sherwen, T., Wilde, S. E., Cliff, S. J., Carpenter, L. J., Hopkins, J. R., Bauguitte, S. J., Reed, C., Barker, P., Allen, G., Bannan, T. J., Matthews, E., Mehra, A., Percival, C., Heard, D. E., Whalley, L. K., Ronnie, G. V., Seldon, S., Ingham, T. & 4 others, Keller, C. A., Knowland, K. E., Nisbet, E. G. & Andrews, S., 23 Sep 2021

    Article in Environmental Science: Atmospheres

  24. Introduction of probiotic bacterial consortia promotes plant growth via impacts on the resident rhizosphere microbiome

    Hu, J., Yang, T., Friman, V-P., Kowalchuk, G. A., Hautier, Y., Li, M., Wei, Z., Xu, Y., Shen, Q. & Jousset, A., 21 Sep 2021, (Accepted/In press)

    Article in Proceedings of the Royal Society B

  25. R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements

    Ellis, D. A., Reyes-Martín, F., Rodríguez-López, M., Cotobal, C., Sun, X. M., Saintain, Q., Jeffares, D. C., Marguerat, S., Tallada, V. A. & Bähler, J., 31 Aug 2021

    Article in PLoS Genetics

  26. Bone Marrow Remodelling Supports Hematopoiesis in Response to Immune Thrombocytopenia Progression

    Herd, O., Rani, G. F., Hewitson, J. P., Hogg, K., Stone, A., Cooper, N., Kent, D. G., Genever, P. & Hitchcock, I. S., 24 Aug 2021, (E-pub ahead of print)

    Article in Blood Advances

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