Search research publications and outputs

  1. 2017
  2. Bringing numerous methods for expression and promoter analysis to a public cloud computing service

    Polanski, K., Gao, B., Mason, S. A., Brown, P., Ott, S., Denby, K. & Wild, D. L. 6 Nov 2017

    Article in Bioinformatics

  3. Architecture and dynamics of the jasmonic acid gene regulatory network

    Hickman, R., Van Verk, M. C., Van Dijken, A. J. H., Pereira Mendes, M., Vroegop-Vos, I. A., Caarls, L., Steenbergen, M., Van der Nagel, I., Wesselink, G. J., Jironkin, A., Talbot, A., Rhodes, J., De Vries, M., Schuurink, R. C., Denby, K., Pieterse, C. M. J. & Van Wees, S. C. M. Aug 2017

    Article in The Plant Cell

  4. Harnessing Diversity from Ecosystems to Crops to Genes

    Buchanan-Wollaston, V., Wilson, Z., Tardieu, F., Beynon, J. & Denby, K. 30 Mar 2017

    Article in Food and Energy Security

  5. 2016
  6. 2015
  7. Jasmonate signalling drives time-of-day differences in susceptibility of Arabidopsis to the fungal pathogen Botrytis cinerea

    Ingle, R. A., Stoker, C., Stone, W., Adams, N., Smith, R., Grant, M., Carré, I., Roden, L. C. & Denby, K. J. 1 Dec 2015

    Article in Plant Journal

  8. Transcriptional dynamics driving MAMP-triggered immunity and pathogen effector-mediated immunosuppression in Arabidopsis leaves following infection with Pseudomonas syringae pv tomato DC3000

    Lewis, L. A. , Polanski, K. , de Torres-Zabala, M. , Jayaraman, S. , Bowden, L. , Moore, J. , Penfold, C. A. , Jenkins, D. J. , Hill, C. , Baxter, L. , Kulasekaran, S. , Truman, W. , Littlejohn, G. , Prusinska, J. , Mead, A. , Steinbrenner, J. , Hickman, R. , Rand, D. , Wild, D. L. , Ott, S. & 5 others Buchanan-Wollaston, V., Smirnoff, N., Beynon, J., Denby, K. & Grant, M. 1 Nov 2015

    Article in The Plant Cell

  9. Standards for plant synthetic biology: A common syntax for exchange of DNA parts

    Patron, N. J. , Orzaez, D. , Marillonnet, S. , Warzecha, H. , Matthewman, C. , Youles, M. , Raitskin, O. , Leveau, A. , Farré, G. , Rogers, C. , Smith, A. , Hibberd, J. , Webb, A. A. R. , Locke, J. , Schornack, S. , Ajioka, J. , Baulcombe, D. C. , Zipfel, C. , Kamoun, S. , Jones, J. D. G. & 38 others Kuhn, H., Robatzek, S., Van Esse, H. P., Sanders, D., Oldroyd, G., Martin, C., Field, R., O'Connor, S., Fox, S., Wulff, B., Miller, B., Breakspear, A., Radhakrishnan, G., Delaux, P. M., Loqué, D., Granell, A., Tissier, A., Shih, P., Brutnell, T. P., Quick, W. P., Rischer, H., Fraser, P. D., Aharoni, A., Raines, C., South, P. F., Ané, J. M., Hamberger, B. R., Langdale, J., Stougaard, J., Bouwmeester, H., Udvardi, M., Murray, J. A. H., Ntoukakis, V., Schäfer, P., Denby, K., Edwards, K. J., Osbourn, A. & Haseloff, J. 1 Oct 2015

    Article in The New phytologist

  10. Reassess the t test: Interact with all your data via ANOVA

    Brady, S. M., Burow, M., Busch, W., Carlborg, Õ., Denby, K. J., Glazebrook, J., Hamilton, E. S., Harmer, S. L., Haswell, E. S., Maloof, J. N., Springer, N. M. & Kliebenstein, D. J. 1 Aug 2015

    Article in The Plant Cell

  11. Time-series transcriptomics reveals that AGAMOUS-LIKE22 affects primary metabolism and developmental processes in drought-stressed arabidopsis

    Bechtold, U. , Penfold, C. A. , Jenkins, D. J. , Legaie, R. , Moore, J. D. , Lawson, T. , Matthews, J. S. A. , Vialet-Chabrand, S. R. M. , Baxter, L. , Subramaniam, S. , Hickman, R. , Florance, H. , Sambles, C. , Salmon, D. L. , Feil, R. , Bowden, L. , Hill, C. , Baker, N. R. , Lunn, J. E. , Finkenstädt, B. & 9 others Mead, A., Buchanan-Wollaston, V., Beynon, J., Rand, D. A., Wild, D. L., Denby, K. J., Ott, S., Smirnoff, N. & Mullineaux, P. M. 1 Feb 2015

    Article in The Plant Cell

  12. Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity

    Atwell, S., Corwin, J. A., Soltis, N. E., Subedy, A., Denby, K. J. & Kliebenstein, D. J. 2015

    Article in Frontiers in Microbiology

  13. 2014
  14. Increased resistance to biotrophic pathogens in the arabidopsis constitutive induced resistance 1 mutant is EDS1 and PAD4-dependent and modulated by environmental temperature

    Carstens, M., McCrindle, T. K., Adams, N., Diener, A., Guzha, D. T., Murray, S. L., Parker, J. E., Denby, K. J. & Ingle, R. A. 10 Oct 2014

    Article in PloS One

  15. Wigwams: Identifying gene modules co-regulated across multiple biological conditions

    Polanski, K., Rhodes, J., Hill, C., Zhang, P., Jenkins, D. J., Kiddle, S. J., Jironkin, A., Beynon, J., Buchanan-Wollaston, V., Ott, S. & Denby, K. J. 1 Apr 2014

    Article in Bioinformatics

  16. 2013
  17. A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves

    Hickman, R., Hill, C., Penfold, C. A., Breeze, E., Bowden, L., Moore, J. D., Zhang, P., Jackson, A., Cooke, E., Bewicke-Copley, F., Mead, A., Beynon, J., Wild, D. L., Denby, K. J., Ott, S. & Buchanan-Wollaston, V. Jul 2013

    Article in Plant Journal

  18. Gene-for-gene tolerance to bacterial wilt in Arabidopsis

    Van Der Linden, L., Bredenkamp, J., Naidoo, S., Fouché-Weich, J., Denby, K. J., Genin, S., Marco, Y. & Berger, D. K. Apr 2013

    Article in MOLECULAR PLANT-MICROBE INTERACTIONS

  19. 2012
  20. Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants

    Baxter, L., Jironkin, A., Hickman, R., Moore, J., Barrington, C., Krusche, P., Dyer, N. P., Buchanan-Wollaston, V., Tiskin, A., Beynon, J., Denby, K. & Ott, S. Oct 2012

    Article in The Plant Cell

  21. Arabidopsis defense against Botrytis cinerea: Chronology and regulation deciphered by high-resolution temporal transcriptomic analysis

    Windram, O. , Madhou, P. , Mchattie, S. , Hill, C. , Hickman, R. , Cooke, E. , Jenkins, D. J. , Penfold, C. A. , Baxter, L. , Breeze, E. , Kiddle, S. J. , Rhodes, J. , Atwell, S. , Kliebenstein, D. J. , Kim, Y. S. , Stegle, O. , Borgwardt, K. , Zhang, C. , Tabrett, A. , Legaie, R. & 9 others Moore, J., Finkenstadt, B., Wild, D. L., Mead, A., Rand, D., Beynon, J., Ott, S., Buchanan-Wollaston, V. & Denby, K. J. Sep 2012

    Article in The Plant Cell

  22. MEDIATOR25 acts as an integrative hub for the regulation of jasmonate-responsive gene expression in Arabidopsis

    Çevik, V., Kidd, B. N., Zhang, P., Hill, C., Kiddle, S., Denby, K. J., Holub, E. B., Cahill, D. M., Manners, J. M., Schenk, P. M., Beynon, J. & Kazan, K. Sep 2012

    Article in Plant Physiology

  23. 2011
  24. Metabolomic approaches reveal that cell wall modifications play a major role in ethylene-mediated resistance against Botrytis cinerea

    Lloyd, A. J., William Allwood, J., Winder, C. L., Dunn, W. B., Heald, J. K., Cristescu, S. M., Sivakumaran, A., Harren, F. J. M., Mulema, J., Denby, K., Goodacre, R., Smith, A. R. & Mur, L. A. J. Sep 2011

    Article in Plant Journal

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