Search research publications and outputs

  1. 2014
  2. Side by Side Comparison of Chemical Compounds Generated by Aqueous Pretreatments of Maize Stover, Miscanthus and Sugarcane Bagasse

    Gómez, L. D., Vanholme, R., Bird, S., Goeminne, G., Trindade, L. M., Polikarpov, I., Simister, R., Morreel, K., Boerjan, W. & McQueen Mason, S. J., Dec 2014

    Article in BioEnergy Research

  3. The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond

    Prigent, S., Collet, G., Dittami, S. M., Delage, L., Ethis de Corny, F., Dameron, O., Eveillard, D., Thiele, S., Cambefort, J., Boyen, C., Siegel, A. & Tonon, T., Oct 2014

    Article in The Plant journal

  4. Genome and metabolic network of "Candidatus Phaeomarinobacter ectocarpi" Ec32, a new candidate genus of Alphaproteobacteria frequently associated with brown algae

    Dittami, S. M., Barbeyron, T., Boyen, C., Cambefort, J., Collet, G., Delage, L., Gobet, A., Groisillier, A., Leblanc, C., Michel, G., Scornet, D., Siegel, A., Tapia, J. E. & Tonon, T., 25 Jul 2014

    Article in Frontiers in genetics

  5. Mannitol metabolism in brown algae involves a new phosphatase family

    Groisillier, A., Shao, Z., Michel, G., Goulitquer, S., Bonin, P., Krahulec, S., Nidetzky, B., Duan, D., Boyen, C. & Tonon, T., 1 Feb 2014

    Article in Journal of Experimental Botany

  6. An essential role for LPA signalling in telencephalon development

    Geach, T. J., Faas, L., Devader, C., Gonzalez-Cordero, A., Brunsdon, H., tabler, J., Isaacs, H. V. & Dale, L., Feb 2014

    Article in Development

  7. Phytoextraction as a tool for green chemistry

    Hunt, A. J., Anderson, C., Bruce, N. C., Garcia, A. M., Graedel, T., Hodson, M. E., Meech, J., Nassar, N., Parker, H. L., Rylott, L., Sotiriou, K., Zhang, Q. & Clark, J. H., Feb 2014

    Article in Green Processing and Synthesis

  8. Evaluating the composition and processing potential of novel sources of Brazilian biomass for sustainable biorenewables production

    Lima, M. A., Gomez, L. D., Steele-King, C. G., Simister, R., Bernardinelli, O. D., Carvalho, M. A., Rezende, C. A., Labate, C. A., Deazevedo, E. R., McQueen-Mason, S. J., Polikarpov, I. & McQueen Mason, S. J., 18 Jan 2014

    Article in Biotechnology for biofuels

  9. Chondrus crispus - A present and historical model organism for red seaweeds

    Collén, J., Cornish, M. L., Craigie, J., Ficko-Blean, E., Hervé, C., Krueger-Hadfield, S. A., Leblanc, C., Michel, G., Potin, P., Tonon, T. & Boyen, C., 2014

    Article in Advances in Botanical Research

  10. Effect of a mutagenized acyl‐ACP thioesterase FATA allele from sunflower with improved activity in tobacco leaves and Arabidopsis seeds.

    Moreno-Pérez, A. J., Venegas‐Calerón, M., Vaistij, F. E., Salas, J. J., Larson, T. R., Garcés, R., Graham, I. A. & Martínez-Force, E., 2014

    Article in Planta

  11. 2013
  12. Identification of crop cultivars with consistently high lignocellulosic sugar release requires the use of appropriate statistical design and modelling.

    Oakey, H., Shafiei, R., Comadran, J., Uzrek, N., Cullis, B., Gomez, L., Whitehead, C., McQueen Mason, S. J., Waugh, R. & Halpin, C., 21 Dec 2013

    Article in Biotechnology for biofuels

  13. Different stress responsive strategies to drought and heat in two durum wheat cultivars with contrasting water use efficiency

    Aprile, A., Havlickova, L., Panna, R., Marè, C., Borrelli, G. M., Marone, D., Perrotta, C., Rampino, P., De Bellis, L., Curn, V., Mastrangelo, A. M., Rizza, F. & Cattivelli, L., 22 Nov 2013

    Article in BMC Genomics

  14. An inhibitor of oil body mobilization in Arabidopsis.

    Brown, L-A., Larson, T., Graham, I. A., Hawes, C., Paudyal, R., Warriner, S. & Baker, A., Nov 2013

    Article in New Phytologist

  15. Photosynthetic entrainment of the Arabidopsis thaliana circadian clock

    Haydon, M. J., Mielczarek, O., Robertson, F. C., Hubbard, K. E. & Webb, A. A. R., 31 Oct 2013

    Article in Nature

  16. Genetic diversity of yacon (Smallanthus sonchifolius (Poepp. & Endl.) H. Robinson) and its wild relatives as revealed by ISSR markers

    Svobodová, E., Dvořáková, Z., Čepková, P. H., Viehmannová, I., Havlíčková, L., Cusimamani, E. F., Russo, D. & Meza Zela, G., Oct 2013

    Article in Biochemical systematics and ecology

  17. Linkage mapping in the oilseed crop Jatropha curcas L. reveals a locus controlling the biosynthesis of phorbol esters which cause seed toxicity.

    King, A. J., Montes, L., Clarke, J. G., Affleck, J., Li, Y., Witsenboer, H., van der Vossen, E., van der Linde, P., Tripathi, Y., Tavares, E., Shukla, P., Rajasekaran, T., van Loo, E. & Graham, I. A., Oct 2013

    Article in Plant biotechnology journal

  18. Structural characterization of a unique marine animal family 7 cellobiohydrolase suggests a mechanism of cellulase salt tolerance

    Kern, M., McGeehan, J. E., Streeter, S. D., Martin, R. N. A., Besser, K., Elias, L., Eborall, W., Malyon, G. P., Payne, C. M., Himmel, M. E., Schnorr, K., Beckham, G. T., Cragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 3 Jun 2013

    Article in Proceedings of the National Academy of Sciences of the United States of America

  19. Metabolic regulation of circadian clocks

    Haydon, M. J., Hearn, T. J., Bell, L. J., Hannah, M. A. & Webb, A. A. R., May 2013

    Literature review in Seminars in cell & developmental biology

  20. Key role for a glutathione transferase in multiple-herbicide resistance in grass weeds

    Cummins, I., Wortley, D. J., Sabbadin, F., He, Z., Coxon, C. R., Straker, H. E., Sellars, J. D., Knight, K., Edwards, L., Hughes, D., Kaundun, S. S., Hutchings, S-J., Steel, P. G. & Edwards, R., 9 Apr 2013

    Article in Proceedings of the National Academy of Sciences of the United States of America

  21. Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida

    Collén, J., Porcel, B., Carré, W., Ball, S. G., Chaparro, C., Tonon, T., Barbeyron, T., Michel, G., Noel, B., Valentin, K., Elias, M., Artiguenave, F., Arun, A., Aury, J-M., Barbosa-Neto, J. F., Bothwell, J. H., Bouget, F-Y., Brillet, L., Cabello-Hurtado, F., Capella-Gutiérrez, S. & 38 others, Charrier, B., Cladière, L., Cock, J. M., Coelho, S. M., Colleoni, C., Czjzek, M., Da Silva, C., Delage, L., Denoeud, F., Deschamps, P., Dittami, S. M., Gabaldón, T., Gachon, C. M. M., Groisillier, A., Hervé, C., Jabbari, K., Katinka, M., Kloareg, B., Kowalczyk, N., Labadie, K., Leblanc, C., Lopez, P. J., McLachlan, D. H., Meslet-Cladiere, L., Moustafa, A., Nehr, Z., Nyvall Collén, P., Panaud, O., Partensky, F., Poulain, J., Rensing, S. A., Rousvoal, S., Samson, G., Symeonidi, A., Weissenbach, J., Zambounis, A., Wincker, P. & Boyen, C., 26 Mar 2013

    Article in Proceedings of the National Academy of Sciences of the United States of America

  22. Disrupting the cynnamil alcohol dehydrogenase 1 gene (BdCAD1) leads to altered lignification and improved saccharification in Brachypodium distachyon.

    M.B d'Yvoire, O. Bouchabke-Coussa, W.Voorend, S. Antelme, L. Cezard, F. Legee, P. Lebris, S. Legay, Whitehead, C. B., McQueen Mason, S. J., Gomez, L. D., L. Jouanin, C. Lapierre & R. Sibout, Feb 2013

    Article in Plant Journal

  23. 2012
  24. The Ectocarpus Genome and Brown Algal Genomics. The Ectocarpus Genome Consortium.

    Cock, J. M., Sterck, L., Ahmed, S., Allen, A. E., Amoutzias, G., Anthouard, V., Artiguenave, F., Arun, A., Aury, J. M., Badger, J. H., Beszteri, B., Billiau, K., Bonnet, E., Bothwell, J. H., Bowler, C., Boyen, C., Brownlee, C., Carrano, C. J., Charrier, B., Cho, G. Y. & 64 others, Coelho, S. M., Collén, J., Le Corguillé, G., Corre, E., Dartevelle, L., Da Silva, C., Delage, L., Delaroque, N., Dittami, S. M., Doulbeau, S., Elias, M., Farnham, G., Gachon, C. M. M., Godfroy, O., Gschloessl, B., Heesch, S., Jabbari, K., Jubin, C., Kawai, H., Kimura, K., Kloareg, B., Küpper, F. C., Lang, D., Le Bail, A., Luthringer, R., Leblanc, C., Lerouge, P., Lohr, M., Lopez, P. J., Macaisne, N., Martens, C., Maumus, F., Michel, G., Miranda-Saavedra, D., Morales, J., Moreau, H., Motomura, T., Nagasato, C., Napoli, C. A., Nelson, D. R., Nyvall-Collén, P., Peters, A. F., Pommier, C., Potin, P., Poulain, J., Quesneville, H., Read, B., Rensing, S. A., Ritter, A., Rousvoal, S., Samanta, M., Samson, G., Schroeder, D. C., Scornet, D., Ségurens, B., Strittmatter, M., Tonon, T., Tregear, J. W., Valentin, K., Von Dassow, P., Yamagishi, T., Rouzé, P., Van de Peer, Y. & Wincker, P., 2 Oct 2012

    Article in Advances in Botanical Research

  25. Arabidopsis GT34 family contains five xyloglucan α-1,6-xylosyltransferases.

    McQueen Mason, S. J., Vuttipongchaikij S, Broclehurst D, Steele-King C, Ashford DA, & Gomez LD, Aug 2012

    Article in New Phytologist

  26. Towards deciphering dynamic changes and evolutionary mechanisms involved in the adaptation to low salinities in Ectocarpus (brown algae)

    Dittami, S. M., Gravot, A., Goulitquer, S., Rousvoal, S., Peters, A. F., Bouchereau, A., Boyen, C. & Tonon, T., Aug 2012

    Article in The Plant journal

  27. Role of Plant Laccases in Lignin Polymerization

    Berthet, S., Thevenin, J., Baratiny, D., Demont-Caulet, N., Debeaujon, I., Bidzinski, P., Leple, J. C., Huis, R., Hawkins, S., Gomez, L. D., Lapierre, C. & Jouanin, L., 14 Jun 2012

    Article in Advances in Botanical Research

  28. Reduced expression of FatA thioesterases in Arabidopsis affects the oil content and fatty acid composition of the seeds

    Moreno-Perez, AJ., Venegas-Caleron, M., Vaistij, F. E., Salas, JJ., Larson, TR., Garces, R., Graham, I. A. & Martinez-Force, E., Mar 2012

    Article in Planta

  29. Factors limiting the synthesis of virgin olive oil volatile esters

    Sanchez-Ortiz, A., Romero-Segura, C., Gazda, V., Graham, I. A., Sanz, C. & Perez, AG., 8 Feb 2012

    Article in Journal of Agricultural and Food Chemistry

  30. Tissue-Specific Whole Transcriptome Sequencing in Castor, Directed at Understanding Triacylglycerol Lipid Biosynthetic Pathways

    Brown, A. P., Kroon, J. T. M., Swarbreck, D., Febrer, M., Larson, T. R., Graham, I. A., Caccamo, M. & Slabas, A. R., 3 Feb 2012

    Article in PLoS ONE

  31. Rosiglitazone increases fatty acid Δ9-desaturation and decreases elongase activity index in human skeletal muscle in vivo

    Mai, K., Andres, J., Bobbert, T., Assmann, T., Biedasek, K., Diederich, S., Graham, I. A., Larson, T. R., Pfeiffer, AF. & Spranger, J., Jan 2012

    Article in Metabolism

  32. 2011
  33. Toward systems biology in brown algae to explore acclimation and adaptation to the shore environment

    Tonon, T., Eveillard, D., Prigent, S., Bourdon, J., Potin, P., Boyen, C. & Siegel, A., Dec 2011

    Review article in Omics : a journal of integrative biology

  34. High throughput discovery of heteroaromatic-modifying enzymes allows enhancement of novobiocin selectivity

    Patel, S. M., de la Fuente, M., Ke, S., Guimaraes, A. M. R., Oliyide, A. O., Ji, X., Stapleton, P., Osbourn, A., Pan, Y., Bowles, D. J., Davis, B. G., Schatzlein, A. & Yang, M., 14 Oct 2011

    Article in Chemical Communications

  35. Mannitol in six autotrophic stramenopiles and Micromonas

    Dittami, S. M., Aas, H. T. N., Paulsen, B. S., Boyen, C., Edvardsen, B. & Tonon, T., Aug 2011

    Article in Plant Signaling and Behavior

  36. Multiple roles for plant glutathione transferases in xenobiotic detoxification.

    Edwards, R., Cummins, I., Dixon, D.P, Freitag-Pohl, S. & Skipsey, M., May 2011

    Article in Drug metabolism reviews

  37. A DELLA in Disguise: SPATULA Restrains the Growth of the Developing Arabidopsis Seedling

    Josse, E-M., Gan, Y., Bou-Torrent, J., Stewart, K. L., Gilday, A. D., Jeffree, C. E., Vaistij, F. E., Martinez-Garcia, J. F., Nagy, F., Graham, I. A. & Halliday, K. J., Apr 2011

    Article in The Plant Cell

  38. The circadian oscillator gene GIGANTEA mediates a long-term response of the Arabidopsis thaliana circadian clock to sucrose

    Dalchau, N., Baek, S. J., Briggs, H. M., Robertson, F. C., Dodd, A. N., Gardner, M. J., Stancombe, M. A., Haydon, M. J., Stan, G-B., Gonçalves, J. M. & Webb, A. A. R., 22 Mar 2011

    Article in Proceedings of the National Academy of Sciences of the United States of America

  39. Cloning, tissue expression analysis, and functional characterization of two Δ6-desaturase variants of sea bass (Dicentrarchus labrax L.)

    Santigosa, E., Geay, F., Tonon, T., Le Delliou, H., Kuhl, H., Reinhardt, R., Corcos, L., Cahu, C., Zambonino-Infante, J. L. & Mazurais, D., Feb 2011

    Article in Marine biotechnology (New York, N.Y.)

  40. Mannitol-1-phosphate dehydrogenase activity in Ectocarpus siliculosus, a key role for mannitol synthesis in brown algae

    Rousvoal, S., Groisillier, A., Dittami, S. M., Michel, G., Boyen, C. & Tonon, T., Feb 2011

    Article in Planta

  41. Microarray estimation of genomic inter-strain variability in the genus Ectocarpus (Phaeophyceae)

    Dittami, S. M., Proux, C., Rousvoal, S., Peters, A. F., Cock, J. M., Coppée, J-Y., Boyen, C. & Tonon, T., 13 Jan 2011

    Article in BMC Molecular Biology

  42. Conserved cysteine residues in the mammalian lamin A tail are essential for cellular resposes to ROS generation.

    Edwards, R., Pekovic,V., Gibbs-Seymour, I., Markiewicz, E., Alzoghaibi, F., Benham, A.M, Wenhert, M., von Zglinicki, T. & Hutchison, C.J, 2011

    Article in Aging Cell

  43. 2010
  44. Diurnal oscillations of metabolite abundances and gene analysis provide new insights into central metabolic processes of the brown alga Ectocarpus siliculosus

    Gravot, A., Dittami, S. M., Rousvoal, S., Lugan, R., Eggert, A., Collén, J., Boyen, C., Bouchereau, A. & Tonon, T., Oct 2010

    Article in The New phytologist

  45. SPATULA links daytime temperature and plant growth rate

    Sidaway-Lee, K., Josse, E-M., Brown, A., Gan, Y., Halliday, K., Graham, I. A. & Penfield, S., 24 Aug 2010

    Article in Current Biology

  46. Hydrophilicity, the major determining factor influencing the solvation environment of protic ionic liquids

    Wright, L., Sanders, M. W., Tate, L., Fairless, G., Crowhurst, L., Bruce, N. C., Walker, A. J., Hembury, G. A. & Shimizu, S., 21 Aug 2010

    Article in Physical Chemistry Chemical Physics

  47. Potassium deficiency induces the biosynthesis of oxylipins and glucosinolates in Arabidopsis thaliana

    Troufflard, S., Mullen, W., Larson, T. R., Graham, I. A., Crozier, A., Amtmann, A. & Armengaud, P., 11 Aug 2010

    Article in BMC Plant Biology

  48. Enhancement of Plant Metabolite Fingerprinting by Machine Learning

    Scott, I. M., Vermeer, C. P., Liakata, M., Corol, D. I., Ward, J. L., Lin, W., Johnson, H. E., Whitehead, L., Kular, B., Baker, J. M., Walsh, S., Dave, A., Larson, T. R., Graham, I. A., Wang, T. L., King, R. D., Draper, J. & Beale, M. H., Aug 2010

    Article in Plant Physiology

  49. The Ectocarpus genome and the independent evolution of multicellularity in brown algae

    Cock, J. M., Sterck, L., Rouzé, P., Scornet, D., Allen, A. E., Amoutzias, G., Anthouard, V., Artiguenave, F., Aury, J-M., Badger, J. H., Beszteri, B., Billiau, K., Bonnet, E., Bothwell, J. H., Bowler, C., Boyen, C., Brownlee, C., Carrano, C. J., Charrier, B., Cho, G. Y. & 57 others, Coelho, S. M., Collén, J., Corre, E., Da Silva, C., Delage, L., Delaroque, N., Dittami, S. M., Doulbeau, S., Elias, M., Farnham, G., Gachon, C. M. M., Gschloessl, B., Heesch, S., Jabbari, K., Jubin, C., Kawai, H., Kimura, K., Kloareg, B., Küpper, F. C., Lang, D., Le Bail, A., Leblanc, C., Lerouge, P., Lohr, M., Lopez, P. J., Martens, C., Maumus, F., Michel, G., Miranda-Saavedra, D., Morales, J., Moreau, H., Motomura, T., Nagasato, C., Napoli, C. A., Nelson, D. R., Nyvall-Collén, P., Peters, A. F., Pommier, C., Potin, P., Poulain, J., Quesneville, H., Read, B., Rensing, S. A., Ritter, A., Rousvoal, S., Samanta, M., Samson, G., Schroeder, D. C., Ségurens, B., Strittmatter, M., Tonon, T., Tregear, J. W., Valentin, K., von Dassow, P., Yamagishi, T., Van de Peer, Y. & Wincker, P., 3 Jun 2010

    Article in Nature

  50. Copper stress proteomics highlights local adaptation of two strains of the model brown alga Ectocarpus siliculosus

    Ritter, A., Ubertini, M., Romac, S., Gaillard, F., Delage, L., Mann, A., Cock, J. M., Tonon, T., Correa, J. A. & Potin, P., Jun 2010

    Article in Proteomics

  51. LICRED: A Versatile Drop-In Vector for Rapid Generation of Redox-Self-Sufficient Cytochrome P450s

    Sabbadin, F., Hyde, R., Robin, A., Hilgarth, E-M., Delenne, M., Flitsch, S., Turner, N., Grogan, G. & Bruce, N. C., 3 May 2010

    Article in Chembiochem

  52. BODIPY probes to study peroxisome dynamics in vivo.

    Edwards, R., Landrum, M., Smertenko, A., Hussey, P.J & Steel, P.G, May 2010

    Article in Plant Journal

  53. Identification of the 2-Hydroxyglutarate and Isovaleryl-CoA Dehydrogenases as Alternative Electron Donors Linking Lysine Catabolism to the Electron Transport Chain of Arabidopsis Mitochondria

    Araujo, W. L., Ishizaki, K., Nunes-Nesi, A., Larson, T. R., Tohge, T., Krahnert, I., Witt, S., Obata, T., Schauer, N., Graham, I. A., Leaver, C. J. & Fernie, A. R., May 2010

    Article in The Plant Cell

  54. Toxicity of unsaturated fatty acids to the biohydrogenating ruminal bacterium, Butyrivibrio fibrisolvens

    Maia, M. R. G., Chaudhary, L. C., Bestwick, C. S., Richardson, A. J., McKain, N., Larson, T. R., Graham, I. A. & Wallace, R. J., 18 Feb 2010

    Article in Bmc microbiology

  55. Expansins expression is associated with grain size dynamics in wheat (Triticum aestivum L.)

    McQueen Mason, S. J., Lizana, X. C., Riegel, R., Gomez, L. D., Herrera, J., Isla, A. & Calderini, D. F., Feb 2010

    Article in Journal of Experimental Botany

  56. The genetic map of Artemisia annua L. identifies multiple loci affecting yield of the antimalarial drug artemisinin

    Graham, I. A., Besser, K., Blumer, S., Branigan, C. A., Czechowski, T., Elias, L., Guterman, I., Harvey, D., Isaac, P. G., Khan, A. M., Larson, T. R., Li, Y., Pawson, T., Penfield, T., Rae, A. M., Rathbone, D. A., Reid, S., Ross, J., Smallwood, M. F., Segura, V. & 4 others, Townsend, T., Vyas, D., Winzer, T. & Bowles, D., 15 Jan 2010

    Article in Science

  57. Fluorescence quenched quinone methide based activity probes-a cautionary tale.

    Edwards, R., Sellars, J.D, Landrum, M., Congreve, A., Dixon, D.P, Moseley, J.A, Beeby, A. & Steel, P.G, 2010

    Article in Organic and Biomolecular Chemistry

  58. 2009
  59. Control of bud activation by an auxin transport switch

    Prusinkiewicz, P., Crawford, S., Smith, R. S., Ljung, K., Bennett, T., Ongaro, V. & Leyser, O., 13 Oct 2009

    Article in Proceedings of the National Academy of Sciences of the United States of America

  60. Unexpected Preferential Dehydration of Artemisinin in Ionic Liquids

    Sanders, M. W., Wright, L., Tate, L., Fairless, G., Crowhurst, L., Bruce, N. C., Walker, A. J., Hembury, G. A. & Shimizu, S., 24 Sep 2009

    Article in Journal of Physical Chemistry A

  61. Arabinan Metabolism during Seed Development and Germination in Arabidopsis

    Gomez, L. D., Steele-King, C. G., Jones, L., Foster, J. M., Vuttipongchaikij, S. & McQueen-Mason, S. J., Sep 2009

    Article in Molecular plant

  62. Oil accumulation in leaves directed by modification of fatty acid breakdown and lipid synthesis pathways

    Slocombe, S. P., Cornah, J., Pinfield-Wells, H., Soady, K., Zhang, Q., Gilday, A., Dyer, J. M. & Graham, I. A., Sep 2009

    Article in Plant biotechnology journal

  63. The synthesis and accumulation of stearidonic acid in transgenic plants: a novel source of 'heart-healthy' omega-3 fatty acids

    Ruiz-Lopez, N., Haslam, R. P., Venegas-Caleron, M., Larson, T. R., Graham, I. A., Napier, J. A. & Sayanova, O., Sep 2009

    Article in Plant biotechnology journal

  64. The C-Glycosylation of Flavonoids in Cereals

    Brazier-Hicks, M., Evans, K. M., Gershater, M. C., Puschmann, H., Steel, P. G. & Edwards, R., 3 Jul 2009

    Article in Journal of Biological Chemistry

  65. Potential of Jatropha curcas as a source of renewable oil and animal feed

    King, A. J., He, W., Cuevas, J. A., Freudenberger, M., Ramiaramanana, D. & Graham, I. A., Jul 2009

    Article in Journal of Experimental Botany

  66. Priming of plant innate immunity by rhizobacteria and beta-aminobutyric acid: differences and similarities in regulation

    Van der Ent, S., Van Hulten, M., Pozo, M. J., Czechowski, T., Udvardi, M. K., Pieterse, C. M. J. & Ton, J., Jul 2009

    Article in New Phytologist

  67. Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress

    Dittami, S. M., Scornet, D., Petit, J-L., Ségurens, B., Da Silva, C., Corre, E., Dondrup, M., Glatting, K-H., König, R., Sterck, L., Rouzé, P., Van de Peer, Y., Cock, J. M., Boyen, C. & Tonon, T., 2009

    Article in Genome biology

  68. 2008
  69. High-Mach number collisionless shock and photo-ionized non-LTE plasma for laboratory astrophysics with intense lasers

    Takabe, H., Kato, T. N., Sakawa, Y., Kuramitsu, Y., Morita, T., Kadono, T., Shigemori, K., Otani, K., Nagatomo, H., Norimatsu, T., Dono, S., Endo, T., Miyanishi, K., Kimura, T., Shiroshita, A., Ozaki, N., Kodama, R., Fujioka, S., Nishimura, H., Salzman, D. & 27 others, Loupias, B., Gregory, C., Koenig, M., Waugh, J. N., Woolsey, N. C., Kato, D., Li, Y-T., Dong, Q-L., Wang, S-J., Zhang, Y., Zhao, J., Wang, F-L., Wei, H-G., Shi, J-R., Zhao, G., Zhang, J-Y., Wen, T-S., Zhang, W-H., Hu, X., Liu, S-Y., Ding, Y. K., Zhang, L., Tang, Y-J., Zhang, B-H., Zheng, Z-J., Sheng, Z-M. & Zhang, J., Dec 2008

    Article in Plasma Physics and Controlled Fusion

  70. Transcriptomic and Reverse Genetic Analyses of Branched-Chain Fatty Acid and Acyl Sugar Production in Solanum pennellii and Nicotiana benthamiana

    Slocombe, S. P., Schauvinhold, I., McQuinn, R. P., Besser, K., Welsby, N. A., Harper, A. L., Aziz, N., Li, Y., Larson, T. R., Giovannoni, J., Dixon, R. A. & Broun, P., Dec 2008

    Article in Plant Physiology

  71. Getting the most out of publicly available T-DNA insertion lines

    Uelker, B., Peiter, E., Dixon, D. P., Moffat, C., Capper, R., Bouche, N., Edwards, R., Sanders, D., Knight, H. & Knight, M. R., Nov 2008

    Article in Plant Journal

  72. Yield assessment of integument-led seed growth following targeted repair of AUXIN RESPONSE FACTOR 2

    Hughes, R., Spielman, M., Schruff, M. C., Larson, T. R., Graham, I. A. & Scott, R. J., Oct 2008

    Article in Plant biotechnology journal

  73. Enhanced glycosylation with mutants of endohexosaminidase A (Endo A)

    Heidecke, C. D., Ling, Z., Bruce, N. C., Moir, J. W. B., Parsons, T. B. & Fairbanks, A. J., 1 Sep 2008

    Article in Chembiochem

  74. Normalisation genes for expression analyses in the brown alga model Ectocarpus siliculosus

    Le Bail, A., Dittami, S. M., de Franco, P-O., Rousvoal, S., Cock, M. J., Tonon, T. & Charrier, B., 18 Aug 2008

    Article in BMC Molecular Biology

  75. Binding and glutathione conjugation of porphyrinogens by plant glutathione transferases

    Dixon, D. P., Lapthorn, A., Madesis, P., Mudd, E. A., Day, A. & Edwards, R., 18 Jul 2008

    Article in Journal of Biological Chemistry

  76. Eleven golden rules of quantitative RT-PCR

    Udvardi, M. K., Czechowski, T. & Scheible, W-R., Jul 2008

    Letter in The Plant Cell

  77. Engineering a catabolic pathway in plants for the degradation of 1,2-dichloroethane

    Mena-Benitez, G. L., Gandia-Herrero, F., Graham, S., Larson, T. R., McQueen-Mason, S. J., French, C. E., Rylott, E. L. & Bruce, N. C., Jul 2008

    Article in Plant Physiology

  78. New members of the glutathione transferase family discovered in red and brown algae

    Hervé, C., de Franco, P-O., Groisillier, A., Tonon, T. & Boyen, C., 15 Jun 2008

    Article in Biochemical journal

  79. Metabolism of the folate precursor p-aminobenzoate in plants - Glucose ester formation and vacuolar storage

    Eudes, A., Bozzo, G. G., Waller, J. C., Naponelli, V., Lim, E-K., Bowles, D. J., Gregory, J. F. & Hanson, A. D., 30 May 2008

    Article in Journal of Biological Chemistry

  80. Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4

    Hanikenne, M., Talke, I. N., Haydon, M. J., Lanz, C., Nolte, A., Motte, P., Kroymann, J., Weigel, D. & Krämer, U., 15 May 2008

    Article in Nature

  81. The minimum information about a genome sequence (MIGS) specification

    Field, D., Garrity, G., Gray, T., Morrison, N., Selengut, J., Sterk, P., Tatusova, T., Thomson, N., Allen, M. J., Angiuoli, S. V., Ashburner, M., Axelrod, N., Baldauf, S., Ballard, S., Boore, J., Cochrane, G., Cole, J., Dawyndt, P., De Vos, P., dePamphilis, C. & 52 others, Edwards, R., Faruque, N., Feldman, R., Gilbert, J., Gilna, P., Gloeckner, F. O., Goldstein, P., Guralnick, R., Haft, D., Hancock, D., Hermjakob, H., Hertz-Fowler, C., Hugenholtz, P., Joint, I., Kagan, L., Kane, M., Kennedy, J., Kowalchuk, G., Kottmann, R., Kolker, E., Kravitz, S., Kyrpides, N., Leebens-Mack, J., Lewis, S. E., Li, K., Lister, A. L., Lord, P., Maltsev, N., Markowitz, V., Martiny, J., Methe, B., Mizrachi, I., Moxon, R., Nelson, K., Parkhill, J., Proctor, L., White, O., Sansone, S-A., Spiers, A., Stevens, R., Swift, P., Taylor, C., Tateno, Y., Tett, A., Turner, S., Ussery, D., Vaughan, B., Ward, N., Whetzel, T., Gil, I. S., Wilson, G. & Wipat, A., May 2008

    Article in Nature Biotechnology

  82. Interactions between axillary branches of Arabidopsis

    Ongaro, V., Bainbridge, K., Williamson, L. & Leyser, O., Mar 2008

    Article in Molecular plant

  83. Development and physiology of the brown alga Ectocarpus siliculosus: two centuries of research

    Charrier, B., Coelho, S. M., Le Bail, A., Tonon, T., Michel, G., Potin, P., Kloareg, B., Boyen, C., Peters, A. F. & Cock, J. M., 2008

    Review article in New Phytologist

  84. 2007
  85. Impact of Transgenic tobacco on trinitrotoluene (TNT) contaminated soil community

    Travis, E. R., Hannink, N. K., Van der Gast, C. J., Thompson, I. P., Rosser, S. J. & Bruce, N. C., 15 Aug 2007

    Article in Environmental science & technology

  86. 2006
  87. Use of the glucosyltransferase UGT71B6 to disturb abscisic acid homeostasis in Arabidopsis thaliana

    Priest, D. M., Ambrose, S. J., Vaistij, F. E., Elias, L., Higgins, G. S., Ross, A. R. S., Abrams, S. R. & Bowles, D. J., May 2006

    Article in Plant Journal

  88. Structure of a flavonoid glucosyltransferase reveals the basis for plant natural product modification

    Offen, W., Martinez-Fleites, C., Yang, M., Kiat-Lim, E., Davis, B. G., Tarling, C. A., Ford, C. M., Bowles, D. J. & Davies, G. J., 22 Mar 2006

    Article in EMBO Journal

  89. An Arabidopsis mutant impaired in coenzyme a biosynthesis is sugar dependent for seedling establishment

    Rubio, S., Larson, T. R., Gonzalez-Guzman, M., Alejandro, S., Graham, I. A., Serrano, R. & Rodriguez, P. L., Mar 2006

    Article in Plant Physiology

  90. NADPH oxidases in Eukaryotes: red algae provide new hints!

    Hervé, C., Tonon, T., Collén, J., Corre, E. & Boyen, C., Mar 2006

    Article in Current genetics

  91. 2005
  92. Cold and light control seed germination through the bHLH transcription factor SPATULA

    Penfield, S., Josse, E-M., Kannangara, R., Gilday, A. D., Halliday, K. J. & Graham, I. A., Nov 2005

    Article in Current Biology

  93. Purification and characterisation of an antifreeze protein from Forsythia suspensa (L.)

    Simpson, D. J., Smallwood, M., Twigg, S., Doucet, C. J., Ross, J. & Bowles, D. J., Oct 2005

    Article in Cryobiology

  94. The UGT73C5 of Arabidopsis thaliana glucosylates brassinosteroids

    Poppenberger, B., Fujioka, S., Soeno, K., George, G. L., Vaistij, F. E., Hiranuma, S., Seto, H., Takatsuto, S., Adam, G., Yoshida, S. & Bowles, D., Oct 2005

    Article in Proceedings of the National Academy of Sciences of the United States of America

  95. Proton transfer in the oxidative half-reaction of pentaerythritol tetranitrate reductase

    Khan, H., Barna, T., Bruce, N. C., Munro, A. W., Leys, D. & Scrutton, N. S., Sep 2005

    Article in FEBS Journal

  96. Ethylene regulates fast apoplastic acidification and expansin A transcription during submergence-induced petiole elongation in Rumex palustris

    Vreeburg, R. A. M., Benschop, J. J., Peeters, A. J. M., Colmer, T. D., Ammerlaan, A. H. M., Staal, M., Elzenga, T. M., Staals, R. H. J., Darley, C. P., McQueen-Mason, S. J. & Voesenek, L. A. C. J., Aug 2005

    Article in Plant Journal

  97. Fatty acid desaturases from the microalga Thalassiosira pseudonana

    Tonon, T., Sayanova, O., Michaelson, L. V., Qing, R., Harvey, D., Larson, TR., Li, Y., Napier, J. A. & Graham, I. A., Jul 2005

    Article in FEBS Journal

  98. Glycosyltransferases: managers of small molecules

    Bowles, D., Isayenkova, J., Lim, E. K. & Poppenberger, B., Jun 2005

    Literature review in CURRENT OPINION IN PLANT BIOLOGY

  99. Reaction of morphinone reductase with 2-cyclohexen-1-one and 1-nitrocyclohexene

    Messiha, H. L., Munro, A. W., Bruce, N. C., Barsukov, I. & Scrutton, N. S., 18 Mar 2005

    Article in Journal of Biological Chemistry

  100. Resolution of (+)-abscisic acid using an Arabidopsis glycosyltransferase

    Lim, E. K., Doucet, C. J., Hou, B., Jackson, R. G., Abrams, S. R. & Bowles, D. J., 10 Jan 2005

    Article in TETRAHEDRON-ASYMMETRY

  101. 2004
  102. Expansins abundant in secondary xylem belong to subgroup a of the alpha-expansin gene family (1[w])

    Gray-Mitsumune, M., Mellerowicz, E. J., Abe, H., Schrader, J., Winzell, A., Sterky, F., Blomqvist, K., McQueen-Mason, S., Teeri, T. T. & Sundberg, B., Jul 2004

    Article in Plant Physiology

  103. Nomenclature for members of the expansin superfamily of genes and proteins

    Kende, H., Bradford, K. J., Brummell, D. A., Cho, H. T., Cosgrove, D. J., Fleming, A. J., Gehring, C., Lee, Y., McQueen-Mason, S., Rose, J. K. C. & Voesenek, L. A. C. J., May 2004

    Letter in Plant Molecular Biology

  104. P-type ATPase heavy metal transporters with roles in essential zinc homeostasis in Arabidopsis

    Hussain, D., Haydon, M. J., Wang, Y., Wong, E., Sherson, S. M., Young, J., Camakaris, J., Harper, J. F. & Cobbett, C. S., May 2004

    Article in The Plant Cell

  105. 2003
  106. Evolution of substrate recognition across a multigene family of glycosyltransferases in Arabidopsis

    Lim, E. K., Baldauf, S., Li, Y., Elias, L., Worrall, D., Spencer, S. P., Jackson, R. G., Taguchi, G., Ross, J. & Bowles, D. J., Mar 2003

    Article in GLYCOBIOLOGY

  107. Observation of an arsenic adduct in an acetyl esterase crystal structure

    Zhu, X. Y., Larsen, N. A., Basran, A., Bruce, N. C. & Wilson, I. A., 17 Jan 2003

    Article in Journal of Biological Chemistry

  108. 2002
  109. Control of germination and lipid mobilization by COMATOSE, the Arabidopsis homologue of human ALDP

    Footitt, S., Slocombe, S. P., Larner, V., Kurup, S., Wu, Y. S., Larson, T., Graham, I., Baker, A. & Holdsworth, M., 17 Jun 2002

    Article in EMBO Journal

  110. Trehalose-6-phosphate synthase 1, which catalyses the first step in trehalose synthesis, is essential for Arabidopsis embryo maturation

    Eastmond, P. J., van Dijken, A. J. H., Spielman, M., Kerr, A., Tissier, A. F., Dickinson, H. G., Jones, J. D. G., Smeekens, S. C. & Graham, I. A., Jan 2002

    Article in Plant Journal

  111. Phytoremediation of explosives

    Hannink, N. K., Rosser, S. J. & Bruce, N. C., 2002

    Literature review in Critical reviews in plant sciences

  112. 2001
  113. Phytodetoxification of TNT by transgenic plants expressing bacterial nitroreductase

    Hannink, N., French, C. E., Murray, J. A. H., Bruce, N. C., Rosser, S. J., Basran, A. & Nicklin, S., 2001

    Article in Nature Biotechnology

  114. The molecular basis of plant cell wall extension

    Darley, C. P., Forrester, A. M. & McQueen-Mason, S. J., 2001

    Literature review in Plant Molecular Biology

  115. 2000
  116. Stress induces peroxisome biogenesis genes

    Lopez-Huertas, E., Charlton, W. L., Johnson, B., Graham, I. A. & Baker, A., 15 Dec 2000

    Article in EMBO Journal

  117. Promoter trapping of a novel medium-chain acyl-CoA oxidase, which is induced transcriptionally during Arabidopsis seed germination

    Eastmond, P. J., Hooks, M. A., Williams, D., Lange, P., Bechtold, N., Sarrobert, C., Nussaume, L. & Graham, I. A., 3 Nov 2000

    Article in Journal of Biological Chemistry

  118. Limited correlation between expansin gene expression and elongation growth rate

    Caderas, D., Muster, M., Vogler, H., Mandel, T., Rose, J. K. C., McQueen-Mason, S. & Kuhlemeier, C., Aug 2000

    Article in Plant Physiology

  119. 1999
  120. The type II and X cellulose-binding domains of Pseudomonas xylanase A potentiate catalytic activity against complex substrates by a common mechanism

    Gill, J., Rixon, J. E., Bolam, D. N., McQueen-Mason, S., Simpson, P. J., Williamson, M. P., Hazlewood, G. P. & Gilbert, H. J., 1 Sep 1999

    Article in Biochemical journal

  121. Isolation and characterization of a novel antifreeze protein from carrot (Daucus carota)

    Smallwood, M., Worrall, D., Byass, L., Elias, L., Ashford, D., Doucet, C. J., Holt, C., Telford, J., Lillford, P. & Bowles, D. J., 1 Jun 1999

    Article in Biochemical journal

  122. Analysis of expansin-induced morphogenesis on the apical meristem of tomato

    Fleming, A. J., Caderas, D., Wehrli, E., McQueen-Mason, S. & Kuhlemeier, C., Apr 1999

    Article in Planta

  123. 1998
  124. A carrot leucine-rich-repeat protein that inhibits ice recrystallization

    Worrall, D., Elias, L., Ashford, D., Smallwood, M., Sidebottom, C., Lillford, P., Telford, J., Holt, C. & Bowles, D., 2 Oct 1998

    Article in Science

  125. Pseudomonas cellulose-binding domains mediate their effects by increasing enzyme substrate proximity

    Bolam, D. N., Ciruela, A., McQueen-Mason, S., Simpson, P., Williamson, M. P., Rixon, J. E., Boraston, A., Hazlewood, G. P. & Gilbert, H. J., 1 May 1998

    Article in Biochemical journal

  126. 1996
  127. 1995