Search research publications and outputs

  1. 2013
  2. Identification of crop cultivars with consistently high lignocellulosic sugar release requires the use of appropriate statistical design and modelling.

    Oakey, H., Shafiei, R., Comadran, J., Uzrek, N., Cullis, B., Gomez, L., Whitehead, C., McQueen Mason, S. J., Waugh, R. & Halpin, C., 21 Dec 2013

    Article in Biotechnology for biofuels

  3. Microarray analyses demonstrate the involvement of type I interferons in psoriasiform pathology development in D6-deficient mice

    Baldwin, H. M., Pallas, K., King, V., Jamieson, T., McKimmie, C. S., Nibbs, R. J. B., Carballido, J. M., Jaritz, M., Rot, A. & Graham, G. J., 20 Dec 2013

    Article in The Journal of biological chemistry

  4. Hexanucleotide Repeats in ALS/FTD Form Length-Dependent RNA Foci, Sequester RNA Binding Proteins, and Are Neurotoxic

    Lee, Y., Chen, H-J., Peres, J. N., Gomez Deza, J., Attig, J., Stalekar, M., Troakes, C., Nishimura, A. L., Scotter, E. L., Vance, C., Adachi, Y., Sardone, V., Miller, J. W., Smith, B. N., Gallo, J-M., Ule, J., Hirth, F., Rogelj, B., Houart, C. & Shaw, C. E., 12 Dec 2013

    Article in Cell reports

  5. Human Allogeneic Bone Marrow and Adipose Tissue Derived Mesenchymal Stromal Cells Induce CD8+ Cytotoxic T Cell Reactivity

    Roemeling-van Rhijn, M., Reinders, M. E., Franquesa, M., Engela, A. U., Korevaar, S. S., Roelofs, H., Genever, P. G., Ijzermans, J. N., Betjes, M. G., Baan, C. C., Weimar, W. & Hoogduijn, M. J., 12 Dec 2013

    Article in Journal of stem cell research & therapy

  6. Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

    Tisserant, E., Malbreil, M., Kuo, A., Kohler, A., Symeonidi, A., Balestrini, R., Charron, P., Duensing, N., Frei dit Frey, N., Gianinazzi-Pearson, V., Gilbert, L. B., Handa, Y., Herr, J. R., Hijri, M., Koul, R., Kawaguchi, M., Krajinski, F., Lammers, P. J., Masclaux, F. G., Murat, C. & 24 others, Morin, E., Ndikumana, S., Pagni, M., Petitpierre, D., Requena, N., Rosikiewicz, P., Riley, R., Saito, K., San Clemente, H., Shapiro, H., van Tuinen, D., Bécard, G., Bonfante, P., Paszkowski, U., Shachar-Hill, Y. Y., Tuskan, G. A., Young, J. P. W., Sanders, I. R., Henrissat, B., Rensing, S. A., Grigoriev, I. V., Corradi, N., Roux, C. & Martin, F., 10 Dec 2013

    Article in Proceedings of the National Academy of Sciences of the United States of America

  7. Invasive ants-are fire ants drivers of biodiversity loss?

    Hill, J. K., Rosengaus, R. B., Gilbert, F. S. & Hart, A. G., 1 Dec 2013

    Article in Ecological entomology

  8. Observed and predicted effects of climate change on species abundance in protected areas

    Johnston, A., Ausden, M., Dodd, A. M., Bradbury, R. B., Chamberlain, D. E., Jiguet, F., Thomas, C. D., Cook, A. S. C. P., Newson, S. E., Ockendon, N., Rehfisch, M. M., Roos, S., Thaxter, C. B., Brown, A., Crick, H. Q. P., Douse, A., McCall, R. A., Pontier, H., Stroud, D. A., Cadiou, B. & 4 others, Crowe, O., Deceuninck, B., Hornman, M. & Pearce-Higgins, J. W., Dec 2013

    Article in Nature Climate Change

  9. Accelerated growth in the absence of DNA replication origins

    Hawkins, M., Malla, S., Blythe, M. J., Nieduszynski, C. A. & Allers, T., 28 Nov 2013

    Article in Nature

  10. High-resolution replication profiles define the stochastic nature of genome replication initiation and termination

    Hawkins, M., Retkute, R., Müller, C. A., Saner, N., Tanaka, T. U., de Moura, A. P. S. & Nieduszynski, C. A., 27 Nov 2013

    Article in Cell reports

  11. Homotypic vacuole fusion in yeast requires organelle acidification and not the V-ATPase membrane domain

    Coonrod, E. M., Graham, L. A., Carpp, L. N., Carr, T. M., Stirrat, L., Bowers, K., Bryant, N. J. & Stevens, T. H., 25 Nov 2013

    Article in Developmental Cell

  12. Human Bone Marrow- and Adipose Tissue-derived Mesenchymal Stromal Cells are Immunosuppressive In vitro and in a Humanized Allograft Rejection Model

    Roemeling-van Rhijn, M., Khairoun, M., Korevaar, S. S., Lievers, E., Leuning, D. G., Ijzermans, J. N., Betjes, M. G., Genever, P. G., van Kooten, C., de Fijter, H. J., Rabelink, T. J., Baan, C. C., Weimar, W., Roelofs, H., Hoogduijn, M. J. & Reinders, M. E., 25 Nov 2013

    Article in Journal of stem cell research & therapy

  13. Different stress responsive strategies to drought and heat in two durum wheat cultivars with contrasting water use efficiency

    Aprile, A., Havlickova, L., Panna, R., Marè, C., Borrelli, G. M., Marone, D., Perrotta, C., Rampino, P., De Bellis, L., Curn, V., Mastrangelo, A. M., Rizza, F. & Cattivelli, L., 22 Nov 2013

    Article in BMC Genomics

  14. Autocrine TNF-α production supports CML stem and progenitor cell survival and enhances their proliferation

    Gallipoli, P., Pellicano, F., Morrison, H., Laidlaw, K., Allan, E. K., Bhatia, R., Copland, M., Jørgensen, H. G. & Holyoake, T. L., 7 Nov 2013

    Article in Blood

  15. Regulation of pituitary tumor transforming gene (PTTG) expression and phosphorylation in thyroid cells

    Lewy, G. D., Ryan, G. A., Read, M. L., Fong, J. C. W., Poole, V., Seed, R. I., Sharma, N., Smith, V. E., Kwan, P. P. K., Stewart, S. L., Bacon, A., Warfield, A., Franklyn, J. A., McCabe, C. J. & Boelaert, K., 1 Nov 2013

    Article in Clinical endocrinology

  16. Trypanosoma brucei cathepsin-L increases arrhythmogenic sarcoplasmic reticulum-mediated calcium release in rat cardiomyocytes

    Elliott, E. B., McCarroll, D., Hasumi, H., Welsh, C. E., Panissidi, A. A., Jones, N. G., Rossor, C. L., Tait, A., Smith, G. L., Mottram, J. C., Morrison, L. J. & Loughrey, C. M., 1 Nov 2013

    Article in Cardiovascular research

  17. An inhibitor of oil body mobilization in Arabidopsis.

    Brown, L-A., Larson, T., Graham, I. A., Hawes, C., Paudyal, R., Warriner, S. & Baker, A., Nov 2013

    Article in New Phytologist

  18. Genome-wide evidence for speciation with gene flow in Heliconius butterflies

    Martin, S. H., Dasmahapatra, K. K., Nadeau, N. J., Salazar, C., Walters, J. R., Simpson, F., Blaxter, M. L., manica, A., Mallet, J. & Jiggins, C. D., Nov 2013

    Article in Genome Research

  19. Ten lessons for the conservation of African savannah ecosystems

    Beale, C. M., Rensberg, S. V., Bond, W. J., Coughenour, M., Fynn, R., Gaylard, A., Grant, R., Harris, B., Jones, T., Mduma, S., Owen-Smith, N. & Sinclair, A. R. E., Nov 2013

    Article in Biological Conservation

  20. Photosynthetic entrainment of the Arabidopsis thaliana circadian clock

    Haydon, M. J., Mielczarek, O., Robertson, F. C., Hubbard, K. E. & Webb, A. A. R., 31 Oct 2013

    Article in Nature

  21. IL-4 directly signals tissue-resident macrophages to proliferate beyond homeostatic levels controlled by CSF-1

    Jenkins, S. J., Ruckerl, D., Thomas, G. D., Hewitson, J. P., Duncan, S., Brombacher, F., Maizels, R. M., Hume, D. A. & Allen, J. E., 21 Oct 2013

    Article in The Journal of experimental medicine

  22. The conserved C-terminus of the PcrA/UvrD helicase interacts directly with RNA polymerase

    Gwynn, E. J., Smith, A. J., Guy, C. P., Savery, N. J., McGlynn, P. & Dillingham, M. S., 16 Oct 2013

    Article in PLoS ONE

  23. Nerve hyperplasia: a unique feature of ketamine cystitis

    Baker, S. C., Stahlschmidt, J., Oxley, J., Hinley, J., Eardley, I., Marsh, F., Gillatt, D., Fulford, S. & Southgate, J., 8 Oct 2013

    Article in Acta neuropathologica communications

  24. TIME for COFFEE is an essential component in the maintenance of metabolic homeostasis in Arabidopsis thaliana

    Sanchez-Villarreal, A., Shin, J., Bujdoso, N., Obata, T., Neumann, U., Du, S-X., Ding, Z., Davis, A. M., Shindo, T., Schmelzer, E., Sulpice, R., Nunes-Nesi, A., Stitt, M., Fernie, A. R. & Davis, S. J., 1 Oct 2013

    Article in The Plant journal

  25. Divergent evolutionary processes associated with colonization of offshore islands

    Martínková, N., Barnett, R., Cucchi, T., Struchen, R., Pascal, M., Pascal, M., Fischer, M. C., Higham, T., Brace, S., Ho, S. Y. W., Quéré, J-P., O'Higgins, P., Excoffier, L., Heckel, G., Hoelzel, A. R., Dobney, K. M. & Searle, J. B., Oct 2013

    Article in Molecular Ecology

  26. Fluctuating temperature leads to evolution of thermal generalism and preadaptation to novel environments

    Ketola, T., Mikonranta, L., Zhang, J., Saarinen, K., Ormälä, A-M., Friman, V-P., Mappes, J. & Laakso, J., Oct 2013

    Article in Evolution: international journal of organic evolution

  27. Genetic diversity of yacon (Smallanthus sonchifolius (Poepp. & Endl.) H. Robinson) and its wild relatives as revealed by ISSR markers

    Svobodová, E., Dvořáková, Z., Čepková, P. H., Viehmannová, I., Havlíčková, L., Cusimamani, E. F., Russo, D. & Meza Zela, G., Oct 2013

    Article in Biochemical systematics and ecology

  28. Linkage mapping in the oilseed crop Jatropha curcas L. reveals a locus controlling the biosynthesis of phorbol esters which cause seed toxicity.

    King, A. J., Montes, L., Clarke, J. G., Affleck, J., Li, Y., Witsenboer, H., van der Vossen, E., van der Linde, P., Tripathi, Y., Tavares, E., Shukla, P., Rajasekaran, T., van Loo, E. & Graham, I. A., Oct 2013

    Article in Plant biotechnology journal

  29. Pro-inflammatory cytokines can act as intracellular modulators of commensal bacterial virulence

    Mahdavi, J., Royer, P-J., Sjölinder, H. S., Azimi, S., Self, T., Stoof, J., Wheldon, L. M., Brännström, K., Wilson, R., Moreton, J., Moir, J. W. B., Sihlbom, C., Borén, T., Jonsson, A-B., Soultanas, P. & Ala'Aldeen, D. A. A., Oct 2013

    Article in Open Biology

  30. Stochastic association of neighboring replicons creates replication factories in budding yeast

    Saner, N., Karschau, J., Natsume, T., Gierlinski, M., Retkute, R., Hawkins, M., Nieduszynski, C. A., Blow, J. J., de Moura, A. P. S. & Tanaka, T. U., 30 Sep 2013

    Article in Journal of Cell Biology

  31. Horizontally Transmitted Symbionts and Host Colonization of Ecological Niches

    Henry, L., Peccoud, J., Simon, J-C., Hadfield, J., Maiden, M. C. J., Ferrari, J. & Godfray, H. C. J., 9 Sep 2013

    Article in Current Biology

  32. DELLA-interacting SWI3C core subunit of switch/sucrose nonfermenting chromatin remodeling complex modulates gibberellin responses and hormonal cross talk in Arabidopsis

    Sarnowska, E. A., Rolicka, A. T., Bucior, E., Cwiek, P., Tohge, T., Fernie, A. R., Jikumaru, Y., Kamiya, Y., Franzen, R., Schmelzer, E., Porri, A., Sacharowski, S., Gratkowska, D. M., Zugaj, D. L., Taff, A., Zalewska, A., Archacki, R., Davis, S. J., Coupland, G., Koncz, C. & 2 others, Jerzmanowski, A. & Sarnowski, T. J., Sep 2013

    Article in Plant Physiology

  33. Intranasal immunization of lambs with serine/threonine phosphatase 2A against gastrointestinal nematodes.

    Mohamed Fawzi, M., Cruz Bustos, T., Gomez Samblas, M. M., Gonzalez, G., Solano, J., Gonzalez Sanchez, ME., De Pablos Torro, L. M., Corral Caridad, MJ., Cuquerella, M., Osuna, A. & Alunda, JM., Sep 2013

    Article in Clinical and Vaccine Immunology

  34. Evolutionary relationships within actinophages and a putative adaptation for growth in Streptomyces spp

    Smith, M. C. M., Hendrix, R. W., Dedrick, R., Mitchell, K., Ko, C-C., Russell, D., Bell, E., Gregory, M., Bibb, M. J., Pethick, F., Jacobs-Sera, D., Herron, P., Buttner, M. J. & Hatfull, G. F., 30 Aug 2013

    Article in Journal of Bacteriology

  35. James et al. reply

    James, A., Pitchford, J. W. & Plank, M. J., 22 Aug 2013

    Article in Nature

  36. Sequencing-based variant detection in the polyploid crop oilseed rape

    Wells, R., Trick, M., Fraser, F., Soumpourou, E., Clissold, L., Morgan, C., Pauquet, J. & Bancroft, I., 6 Aug 2013

    Article in BMC Plant Biology

  37. The Lin28b-let-7-Hmga2 axis determines the higher self-renewal potential of fetal haematopoietic stem cells.

    Copley, MR., Babovic, S., Benz, C., Knapp, DJHF., Beer, PA., Kent, DG., Wohrer, S., Treloar, DQ., Day, C. & Rowe, K., 1 Aug 2013

    Article in Nature Cell Biology

  38. Rhamnolipids are conserved biosurfactants molecules: implications for their biotechnological potential

    Perfumo, A., Rudden, M., Smyth, T. J. P., Marchant, R., Stevenson, P. S., Parry, N. J. & Banat, I. M., Aug 2013

    Article in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

  39. Secretion of protective antigens by tissue-stage nematode larvae revealed by proteomic analysis and vaccination-induced sterile immunity

    Hewitson, J. P., Ivens, A. C., Harcus, Y., Filbey, K. J., McSorley, H. J., Murray, J., Bridgett, S., Ashford, D., Dowle, A. A. & Maizels, R. M., Aug 2013

    Article in PLOS PATHOGENS

  40. A Mitogenomic Phylogeny of Living Primates

    Finstermeier, K., Meyer, M., Kreuz, E., Hofreiter, M., Zinner, D., Brameier, M. & Roos, C., 16 Jul 2013

    Article in PLoS ONE

  41. JAK-STAT blockade inhibits tumor initiation and clonogenic recovery of prostate cancer stem-like cells

    Kroon, P., Berry, P. A., Stower, M. J., Rodrigues, G., Mann, V. M., Simms, M., Bhasin, D., Chettiar, S., Li, C., Li, P-K., Maitland, N. J. & Collins, A. T., 3 Jul 2013

    Article in Cancer research

  42. Range expansion through fragmented landscapes under a variable climate

    Bennie, J., Lawson, C. R., Wilson, R. J., Hodgson, J. A., Thomas, C. D., Holloway, C. T. R., Roy, D. B. & Brereton, T., 1 Jul 2013

    Article in Ecology Letters

  43. Red noise increases extinction risk during rapid climate change

    Mustin, K., Dytham, C., Benton, T. G. & Travis, J. M. J., 1 Jul 2013

    Article in Diversity and Distributions

  44. A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves

    Hickman, R., Hill, C., Penfold, C. A., Breeze, E., Bowden, L., Moore, J. D., Zhang, P., Jackson, A., Cooke, E., Bewicke-Copley, F., Mead, A., Beynon, J., Wild, D. L., Denby, K. J., Ott, S. & Buchanan-Wollaston, V., Jul 2013

    Article in Plant Journal

  45. Female behaviour drives expression and evolution of gustatory receptors in butterflies

    Briscoe, A., Macias-Munoz, A., Kozak, K., Walters, J. R., Yuan, F., Jamie, G., Martin, S. H., Dasmahapatra, K. K., Ferguson, L. C., Mallet, J., Jacquin-Joly, E. & Jiggins, C. D., Jul 2013

    Article in PLoS Genetics

  46. The schistosome oesophageal gland: initiator of blood processing

    Li, X-H., de Castro-Borges, W., Parker-Manuel, S., Vance, G. M., Demarco, R., Neves, L. X., Evans, G. J. O. & Wilson, R. A., Jul 2013

    Article in PLOS NEGLECTED TROPICAL DISEASES

  47. Regulation of Trypanosoma brucei Total and Polysomal mRNA during Development within Its Mammalian Host

    Capewell, P., Monk, S., Ivens, A., Macgregor, P., Fenn, K., Walrad, P., Bringaud, F., Smith, T. K. & Matthews, K. R., 26 Jun 2013

    Article in PLoS ONE

  48. The circadian clock goes genomic

    Staiger, D., Shin, J., Johansson, M. & Davis, S. J., 24 Jun 2013

    Article in Genome biology

  49. The Thr224Asn mutation in the VPS45 gene is associated with the congenital neutropenia and primary myelofibrosis of infancy

    Stepensky, P., Saada, A., Cowan, M., Tabib, A., Fischer, U., Berkun, Y., Saleh, H., Simanovsky, N., Kogot-Levin, A., Weintraub, M., Ganaiem, H., Shaag, A., Zenvirt, S., Borkhardt, A., Elpeleg, O., Bryant, N. J. & Mevorach, D., 20 Jun 2013

    Article in Blood

  50. Cell-autonomous regulation of neutrophil migration by the D6 chemokine decoy receptor

    Rot, A., McKimmie, C., Burt, C. L., Pallas, K. J., Jamieson, T., Pruenster, M., Horuk, R., Nibbs, R. J. B. & Graham, G. J., 15 Jun 2013

    Article in Journal of Immunology

  51. Self-renewal of single mouse hematopoietic stem cells is reduced by JAK2V617F without compromising progenitor cell expansion.

    Kent, DG., Li, J., Tanna, H., Fink, J., Kirschner, K., Pask, DC., Silber, Y., Hamilton, TL., Sneade, R., Simons, BD. & Green, A. R., 4 Jun 2013

    Article in PLoS Biol

  52. Structural characterization of a unique marine animal family 7 cellobiohydrolase suggests a mechanism of cellulase salt tolerance

    Kern, M., McGeehan, J. E., Streeter, S. D., Martin, R. N. A., Besser, K., Elias, L., Eborall, W., Malyon, G. P., Payne, C. M., Himmel, M. E., Schnorr, K., Beckham, G. T., Cragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 3 Jun 2013

    Article in Proceedings of the National Academy of Sciences of the United States of America

  53. Bicaudal-D uses a parallel, homodimeric coiled coil with heterotypic registry to coordinate recruitment of cargos to dynein.

    Liu, Y., Salter, HK., Holding, AN., Johnson, CM., Stephens, E., Lukavsky, PJ., Walshaw, J. & Bullock, SL., 1 Jun 2013

    Article in Genes and Development

  54. Capturing protein-coding genes across highly divergent species

    Li, C., Hofreiter, M., Straube, N., Corrigan, S. & Naylor, G. J. P., 1 Jun 2013

    Article in Biotechniques

  55. Effects of late quaternary climate change on Palearctic shrews

    Prost, S., Stiller, M., Hofreiter, M., Klietmann, J., Nagel, D., Rabeder, G., Van Kolfschoten, T., Guralnick, R. P., Waltari, E., Vrieling, K. & Sommer, R. S., 1 Jun 2013

    Article in Global Change Biology

  56. Getting the measure of ecosystem services: a social–ecological approach

    Hejnowicz, A. P., Reyers, B., Elmqvist, T., Biggs, R., Cumming, G. & Polasky, S., 1 Jun 2013

    Article in Frontiers in Ecology and the Environment

  57. Losing ground: Past history and future fate of Arctic small mammals in a changing climate

    Prost, S., Guralnick, R. P., Waltari, E., Fedorov, V. B., Kuzmina, E., Smirnov, N., van Kolfschoten, T., Hofreiter, M. & Vrieling, K., 1 Jun 2013

    Article in Global Change Biology

  58. Bourgeois behaviour and freeloading in the colonial orb-web spider Parawixia bistriata (Araneae, Araneidae)

    Wenseleers, T., Bacon, J., Alves, D. A., Couvillon, M. J., Kärcher, M., Nascimento, F. S., Nogueira-Neto, P., Robinson, E. J. H., Tofilski, A. & Ratnieks, F. L. W., Jun 2013

    Article in AMERICAN NATURALIST

  59. Biochemical and structural studies of plant circadian clock proteins

    Saini, R., Szpotkowski, K., Kozak, M., Jaskolski, M. & Davis, S. J., 20 May 2013

    Article in Biotechnologia

  60. Metabolic regulation of circadian clocks

    Haydon, M. J., Hearn, T. J., Bell, L. J., Hannah, M. A. & Webb, A. A. R., May 2013

    Literature review in Seminars in cell & developmental biology

  61. Protein-DNA complexes are the primary sources of replication fork pausing in Escherichia coli

    Gupta, M. K., Guy, C. P., Yeeles, J. T. P., Atkinson, J., Bell, H., Lloyd, R. G., Marians, K. J. & McGlynn, P., 15 Apr 2013

    Article in Proceedings of the National Academy of Sciences of the United States of America

  62. Key role for a glutathione transferase in multiple-herbicide resistance in grass weeds

    Cummins, I., Wortley, D. J., Sabbadin, F., He, Z., Coxon, C. R., Straker, H. E., Sellars, J. D., Knight, K., Edwards, L., Hughes, D., Kaundun, S. S., Hutchings, S-J., Steel, P. G. & Edwards, R., 9 Apr 2013

    Article in Proceedings of the National Academy of Sciences of the United States of America

  63. A preclinical xenograft model of prostate cancer using human tumors

    Lawrence, M. G., Taylor, R. A., Toivanen, R., Pedersen, J., Norden, S., Pook, D. W., Frydenberg, M., Papargiris, M. M., Niranjan, B., Richards, M. G., Wang, H., Collins, A. T., Maitland, N. J., Risbridger, G. P. & Australian Prostate Cancer BioResource, 4 Apr 2013

    Article in Nature Protocols

  64. Endosomal sorting of GLUT4 and Gap1 is conserved between yeast and insulin-sensitive cells

    Shewan, A. M., McCann, R. K., Lamb, C. A., Stirrat, L., Kioumourtzoglou, D., Adamson, I. S., Verma, S., James, D. E. & Bryant, N. J., 1 Apr 2013

    Article in Journal of Cell Science

  65. Multi-generational long-distance migration of insects: Studying the painted lady butterfly in the Western Palaearctic

    Stefanescu, C., Páramo, F., Åkesson, S., Alarcón, M., Ávila, A., Brereton, T., Carnicer, J., Cassar, L. F., Fox, R., Heliölä, J., Hill, J. K., Hirneisen, N., Kjellén, N., Kühn, E., Kuussaari, M., Leskinen, M., Liechti, F., Musche, M., Regan, E. C., Reynolds, D. R. & 7 others, Roy, D. B., Ryrholm, N., Schmaljohann, H., Settele, J., Thomas, C. D., van Swaay, C. & Chapman, J. W., 1 Apr 2013

    Article in Ecography

  66. Arabidopsis Sec1/Munc18 protein SEC11 is a competitive and dynamic modulator of SNARE binding and SYP121-dependent vesicle traffic

    Karnik, R., Grefen, C., Bayne, R., Honsbein, A., Köhler, T., Kioumourtzoglou, D., Williams, M., Bryant, N. J. & Blatt, M. R., Apr 2013

    Article in The Plant Cell

  67. First steps in experimental cancer evolution

    Taylor, T., Johnson, L., Jackson, R., Brockhurst, M. A. & Dash, P., Apr 2013, (Accepted/In press)

    Literature review in Evolutionary applications

  68. Gene-for-gene tolerance to bacterial wilt in Arabidopsis

    Van Der Linden, L., Bredenkamp, J., Naidoo, S., Fouché-Weich, J., Denby, K. J., Genin, S., Marco, Y. & Berger, D. K., Apr 2013

    Article in MOLECULAR PLANT-MICROBE INTERACTIONS

  69. Loss and gain of Drosophila TDP-43 impair synaptic efficacy and motor control leading to age-related neurodegeneration by loss-of-function phenotypes

    Diaper, D. C., Adachi, Y., Sutcliffe, B., Humphrey, D. M., Elliott, C. J. H., Stepto, A., Ludlow, Z. N., Vanden Broeck, L., Callaerts, P., Dermaut, B., Al-Chalabi, A., Shaw, C. E., Robinson, I. M. & Hirth, F., Apr 2013

    Article in Human Molecular Genetics

  70. The Artificial Epigenetic Network

    Turner, A. P., Lones, M. A., Fuente, L. A., Stepney, S., Caves, L. & Tyrrell, A., Apr 2013, p. 66-72.

    Research output: Contribution to conferencePaper

  71. Monoallelic expression of TMPRSS2/ERG in prostate cancer stem cells

    Polson, E. S., Lewis, J. L., Celik, H., Mann, V. M., Stower, M. J., Simms, M. S., Rodrigues, G., Collins, A. T. & Maitland, N. J., 27 Mar 2013

    Article in Nature Communications

  72. Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida

    Collén, J., Porcel, B., Carré, W., Ball, S. G., Chaparro, C., Tonon, T., Barbeyron, T., Michel, G., Noel, B., Valentin, K., Elias, M., Artiguenave, F., Arun, A., Aury, J-M., Barbosa-Neto, J. F., Bothwell, J. H., Bouget, F-Y., Brillet, L., Cabello-Hurtado, F., Capella-Gutiérrez, S. & 38 others, Charrier, B., Cladière, L., Cock, J. M., Coelho, S. M., Colleoni, C., Czjzek, M., Da Silva, C., Delage, L., Denoeud, F., Deschamps, P., Dittami, S. M., Gabaldón, T., Gachon, C. M. M., Groisillier, A., Hervé, C., Jabbari, K., Katinka, M., Kloareg, B., Kowalczyk, N., Labadie, K., Leblanc, C., Lopez, P. J., McLachlan, D. H., Meslet-Cladiere, L., Moustafa, A., Nehr, Z., Nyvall Collén, P., Panaud, O., Partensky, F., Poulain, J., Rensing, S. A., Rousvoal, S., Samson, G., Symeonidi, A., Weissenbach, J., Zambounis, A., Wincker, P. & Boyen, C., 26 Mar 2013

    Article in Proceedings of the National Academy of Sciences of the United States of America

  73. An enzymatic route to selenazolines

    Koehnke, J., Morawitz, F., Bent, A. F., Houssen, W. E., Shirran, S. L., Fuszard, M. A., Smellie, I. A., Botting, C. H., Smith, M. C. M., Jaspars, M. & Naismith, J. H., 18 Mar 2013

    Article in Chembiochem

  74. BRAHMA ATPase of the SWI/SNF chromatin remodeling complex acts as a positive regulator of gibberellin: mediated responses in arabidopsis

    Archacki, R., Buszewicz, D., Sarnowski, T. J., Sarnowska, E., Rolicka, A. T., Tohge, T., Fernie, A. R., Jikumaru, Y., Kotlinski, M., Iwanicka-Nowicka, R., Kalisiak, K., Patryn, J., Halibart-Puzio, J., Kamiya, Y., Davis, S. J., Koblowska, M. K. & Jerzmanowski, A., 11 Mar 2013

    Article in PLoS ONE

  75. Th17-cell plasticity in Helicobacter hepaticus-induced intestinal inflammation

    Morrison, P. J., Bending, D., Fouser, L. A., Wright, J. F., Stockinger, B., Cooke, A. & Kullberg, M. C., 6 Mar 2013

    Article in Mucosal Immunology

  76. COG complexes form spatial landmarks for distinct SNARE complexes

    Willett, R., Kudlyk, T., Pokrovskaya, I., Schönherr, R., Ungar, D., Duden, R. & Lupashin, V., 5 Mar 2013

    Article in Nature Communications

  77. Modeling HEDLA magnetic field generation experiments on laser facilities

    Fatenejad, M., Flocke, N., Lamb, D., Lee, D., Scopatz, A., Tzeferacos, P., Weide, K., Bell, A. R., Gregori, G., Meinecke, J., Murphy, C. D., Ravasio, A., Reville, B., Koenig, M., Marques, J. R., Pelka, A., Yurchak, R., Park, H-S., Remington, B., Benuzzi-Mounaix, A. & 6 others, Miniati, F., Drake, R. P., Krauland, C., Young, R., Crowston, R. & Woolsey, N., 1 Mar 2013

    Article in HIGH ENERGY DENSITY PHYSICS

  78. Packaging signals in single-stranded RNA viruses: Nature's alternative to a purely electrostatic assembly mechanism

    Stockley, P. G., Twarock, R., Bakker, S. E., Barker, A. M., Borodavka, A., Dykeman, E., Ford, R. J., Pearson, A. R., Phillips, S. E. V., Ranson, N. A. & Tuma, R., 1 Mar 2013

    Article in Journal of Biological Physics

  79. Simulation of laser-driven, ablated plasma flows in collisionless shock experiments on OMEGA and the NIF

    Grosskopf, M. J., Drake, R. P., Kuranz, C. C., Rutter, E. M., Ross, J. S., Kugland, N. L., Plechaty, C., Remington, B. A., Park, H-S., Spitkovsky, A., Gargate, L., Gregori, G., Bell, A., Murphy, C. D., Meinecke, J., Reville, B., Sakawa, Y., Kuramitsu, Y., Takabe, H., Froula, D. H. & 7 others, Fiksel, G., Miniati, F., Koenig, M., Ravasio, A., Liang, E., Fu, W. & Woolsey, N., 1 Mar 2013

    Article in HIGH ENERGY DENSITY PHYSICS

  80. The novel NhaE-type Na(+)/H (+) antiporter of the pathogenic bacterium Neisseria meningitidis

    Sousa, P. M. F., Videira, M. A. M., Vorburger, T., Silva, S. T. N., Moir, J. W., Steuber, J. & Melo, A. M. P., Mar 2013

    Article in Archives of microbiology

  81. The RNA-binding region of human TRBP interacts with microRNA precursors through two independent domains

    Benoit, M. P. M. H., Imbert, L., Palencia, A., Pérard, J., Ebel, C., Boisbouvier, J. & Plevin, M. J., 21 Feb 2013

    Article in Nucleic Acids Research

  82. A chemokine self-presentation mechanism involving formation of endothelial surface microstructures

    Whittall, C., Kehoe, O., King, S., Rot, A., Patterson, A. & Middleton, J., 15 Feb 2013

    Article in Journal of Immunology

  83. Molecular insights into vesicle tethering at the Golgi by the Conserved Oligomeric Golgi (COG) complex and the golgin TMF

    Miller, V. J., Sharma, P., Kudlyk, T. A., Frost, L., Rofe, A. P., Watson, I. J., Duden, R., Lowe, M., Lupashin, V. V. & Ungar, D., 8 Feb 2013

    Article in Journal of Biological Chemistry

  84. Mammalian cell entry genes in Streptomyces may provide clues to the evolution of bacterial virulence

    Clark, L. C., Seipke, R. F., Prieto, P., Willemse, J., Van Wezel, G. P., Hutchings, M. I. & Hoskisson, P. A., 6 Feb 2013

    Article in Scientific Reports

  85. Burkholderia diazotrophica sp. nov., isolated from root nodules of Mimosa spp

    Sheu, S-Y., Chou, J-H., Bontemps, C., Elliott, G. N., Gross, E., dos Reis Junior, F. B., Melkonian, R., Moulin, L., James, E. K., Sprent, J. I., Young, J. P. W. & Chen, W-M., Feb 2013

    Article in International journal of systematic and evolutionary microbiology

  86. Disrupting the cynnamil alcohol dehydrogenase 1 gene (BdCAD1) leads to altered lignification and improved saccharification in Brachypodium distachyon.

    M.B d'Yvoire, O. Bouchabke-Coussa, W.Voorend, S. Antelme, L. Cezard, F. Legee, P. Lebris, S. Legay, Whitehead, C. B., McQueen Mason, S. J., Gomez, L. D., L. Jouanin, C. Lapierre & R. Sibout, Feb 2013

    Article in Plant Journal

  87. Genome-wide patterns of divergence and gene flow across a butterfly radiation

    Nadeau, N., Martin, S., Kozak, K., Salazar, C., Dasmahapatra, K. K., Davey, J., Baxter, S., Blaxter, M., Mallet, J. & Jiggins, C., Feb 2013

    Article in Molecular Ecology

  88. Unrelated facultative endosymbionts protect aphids against a fungal pathogen

    Lukasik, P., van Asch, M., Guo, H., Ferrari, J. & Godfray, H. C. J., Feb 2013

    Article in Ecology Letters

  89. The effects of methionine acquisition and synthesis on Streptococcus pneumoniae growth and virulence

    Basavanna, S., Chimalapati, S., Maqbool, A., Rubbo, B., Yuste, J., Wilson, R. J., Hosie, A., Ogunniyi, A. D., Paton, J. C., Thomas, G. & Brown, J. S., 29 Jan 2013

    Article in PLoS ONE

  90. Deep Sequencing of RNA from Ancient Maize Kernels

    Fordyce, S. L., Ávila-Arcos, M. C., Rasmussen, M., Cappellini, E., Romero-Navarro, J. A., Wales, N., Alquezar-Planas, D. E., Penfield, S., Brown, T. A., Vielle-Calzada, J. P., Montiel, R., Jørgensen, T., Odegaard, N., Jacobs, M., Arriaza, B., Higham, T. F. G., Ramsey, C. B., Willerslev, E. & Gilbert, M. T. P., 17 Jan 2013

    Article in PLoS ONE

  91. Policy review: outdoor pursuits

    Thomas, C. D., 17 Jan 2013, The House Parliament's Magazine, p. 32 1 p.

    Research output: Contribution to specialist publicationBook/Film/Article review

  92. A genetically distinct lion (Panthera leo) population from Ethiopia

    Bruche, S., Lippold, S., Hofreiter, M., Gusset, M., Eulenberger, K., Junhold, J., Driscoll, C. A. & Barnett, R., 1 Jan 2013

    Article in European Journal of Wildlife Research

  93. Palaeolithic dogs and the early domestication of the wolf: A reply to the comments of Crockford and Kuzmin (2012)

    Germonpré, M., Sablin, M. V., Després, V., Hofreiter, M., Lázničková-Galetová, M., Stevens, R. E. & Stiller, M., 1 Jan 2013

    Article in Journal of archaeological science

  94. The impact of increased food availability on survival of a long-distance migratory bird

    Seward, A. M., Jones, T. H., Thomas, R. J., Beale, C. M. & Gilbert, L., 1 Jan 2013

    Article in Ecology

  95. Life in cells, hosts, and vectors: parasite evolution across scales

    Mideo, N., Acosta-Serrano, A., Aebischer, T., Brown, M. J. F., Fenton, A., Friman, V-P., Restif, O., Reece, S. E., Webster, J. P. & Brown, S. P., Jan 2013

    Article in Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases

  96. An invasive Mimosa in India does not adopt the symbionts of its native relatives

    Gehlot, H. S., Tak, N., Kaushik, M., Mitra, S., Chen, W-M., Poweleit, N., Panwar, D., Poonar, N., Parihar, R., Tak, A., Sankhla, I. S., Ojha, A., Rao, S. R., Simon, M. F., Reis Junior, F. B. D., Perigolo, N., Tripathi, A. K., Sprent, J. I., Young, J. P. W., James, E. K. & 1 others, Gyaneshwar, P., 2013

    Article in Annals of Botany

  97. Catalytic C–H/C–X Bond Functionalisation of Nucleosides, Nucleotides, Nucleic Acids, Amino Acids, Peptides and Proteins

    Fairlamb, I. J. S., De Ornellas, S., Williams, T. J. & Baumann, C. G., 2013, C–H and C–X Bond Functionalization: Transition Metal Mediation. Ribas, X. (ed.). 1 ed. United Kingdom: Royal Society of Chemistry, Vol. 11. p. 409-447 (RSC Catalysis Series; no. 11).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  98. Effect of rice cultivation systems on indigenous arbuscular mycorrhizal fungal community structure

    Watanarojanaporn, N., Boonkerd, N., Tittabutr, P., Longtonglang, A., Young, J. P. W. & Teaumroong, N., 2013

    Article in Microbes and environments

  99. Helicases at the replication fork

    McGlynn, P., 2013, Advances in Experimental Medicine and Biology: DNA Helicases and DNA Motor Proteins. Spies, M. (ed.). New York, USA: Springer, Vol. 767. p. 97-121

    Research output: Chapter in Book/Report/Conference proceedingChapter

  100. Highly sensitive in vivo imaging of Trypanosoma brucei expressing "red-shifted" luciferase

    McLatchie, A., Burrell-Saward, H., Myburgh, E., Lewis, M., Ward, T., Mottram, J. C., Croft, S., Kelly, J. & Taylor, M., 2013

    Article in PLoS Negl Trop Dis.

  101. Impacts of ozone on regulating services

    Mills, G., Wagg, S., Harmens, H., Jones, L., Simpson, D., Bueker, P., Emberson, L. D., Power, S. A., Sitch, S., Bergmann, E. & Bender, J., 2013, Ozone Pollution: Impacts on ecosystem services and biodiversity. Mills, G., Wagg, S. & Harmens, H. (eds.). CP Vegetation Programme Coordination Centre, Centre for Ecology and Hydrology, Bangor, UK.: ICP Vegetation, p. 43-52 10 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  102. In vivo imaging models for rapid drug screening studies in CNS involved trypanosomiasis

    Myburgh, E., Coles, J., Ritchie, R., Kennedy, P., McLatchie, A., Rodgers, J., Taylor, M., Barrett, M., Brewer, J. & Mottram, J. C., 2013

    Article in PLoS Negl Trop Dis.

  103. Intestinal intraepithelial lymphocyte-enterocyte crosstalk regulates production of bactericidal angiogenin 4 by Paneth cells upon microbial challenge

    Walker, C. R., Hautefort, I., Dalton, J. E., Overweg, K., Egan, C. E., Bongaerts, R. J., Newton, D. J., Cruickshank, S. M., Andrew, E. M. & Carding, S. R., 2013

    Article in PLoS ONE

  104. Mechanism of ubiquitin ligation and lysine prioritization by a HECT E3

    Kamadurai, H. B., Qiu, Y., Deng, A., Harrison, J. S., MacDonald, C., Actis, M., Rodrigues, P., Miller, D. J., Souphron, J., Lewis, S. M., Kurinov, I., Fujii, N., Hammel, M., Piper, R., Kuhlman, B. & Schulman, B. A., 2013

    Article in eLife

  105. Pan genome of the phytoplankton Emiliania underpins its global distribution

    Read, B. A., Kegel, J., Klute, M. J., Kuo, A., Lefebvre, S. C., Maumus, F., Mayer, C., Miller, J., Monier, A., Salamov, A., Young, J., Aguilar, M., Claverie, J. M., Frickenhaus, S., Gonzalez, K., Herman, E. K., Lin, Y. C., Napier, J., Ogata, H., Sarno, A. F. & 58 others, Shmutz, J., Schroeder, D., De Vargas, C., Verret, F., Von Dassow, P., Valentin, K., Van De Peer, Y., Wheeler, G., Dacks, J. B., Delwiche, C. F., Dyhrman, S. T., Glöckner, G., John, U., Richards, T., Worden, A. Z., Zhang, X., Grigoriev, I. V., Allen, A. E., Bidle, K., Borodovsky, M., Bowler, C., Brownlee, C., Mark Cock, J., Elias, M., Gladyshev, V. N., Groth, M., Guda, C., Hadaegh, A., Iglesias-Rodriguez, M. D., Jenkins, J., Jones, B. M., Lawson, T., Leese, F., Lindquist, E., Lobanov, A., Lomsadze, A., Malik, S. B., Marsh, M. E., Mackinder, L., Mock, T., Mueller-Roeber, B., Pagarete, A., Parker, M., Probert, I., Quesneville, H., Raines, C., Rensing, S. A., Riaño-Pachón, D. M., Richier, S., Rokitta, S., Shiraiwa, Y., Soanes, D. M., Van Der Giezen, M., Wahlund, T. M., Williams, B., Wilson, W., Wolfe, G. & Wurch, L. L., 2013

    Article in Nature

  106. Reconciling biodiversity and carbon conservation

    Thomas, C. D., Anderson, B. J., Moilanen, A., Eigenbrod, F., Heinemeyer, A., Quaife, T., Roy, D. B., Gillings, S., Armsworth, P. R. & Gaston, K. J., 2013

    Article in Ecology Letters

  107. Reconstructing genome evolution in historic samples of the Irish potato famine pathogen

    Martin, M. D., Cappellini, E., Samaniego, J. A., Zepeda Mendoza, M. L., Campos, P. F., Seguin-Orlando, A., Wales, N., Orlando, L., Ho, S. Y. W., Dietrich, F. S., Mieczkowski, P. A., Heitman, J., Willerslev, E., Krogh, A., Ristaino, J. B. & Gilbert, M. T. P., 2013

    Article in Nature Communications

  108. Self-assembly of nanoscale graphene components

    Geraets, J., Otty, R. L., Twarock, R. & Hancock, Y., 2013, (Unpublished).

    Research output: Contribution to conferencePoster

  109. Single-molecule cellular biophysics

    Leake, M. C., 2013, Cambridge University Press.

    Research output: Book/ReportBook

  110. Tissue Engineering

    McCaskie, A., Genever, P. & De Bari, C., 2013, Oxford medicine online . Oxford: Oxford University Press

    Research output: Chapter in Book/Report/Conference proceedingChapter

  111. Trait-dependent declines of species following conversion of rain forest to oil palm plantations

    Senior, M. J. M., Hamer, K. C., Bottrell, S., Edwards, D. P., Fayle, T. M., Lucey, J. M., Mayhew, P. J., Newton, R., Peh, K. S-H., Sheldon, F. H., Stewart, C., Styring, A. R., Thom, M. D. F., Woodcock, P. & Hill, J. K., 2013

    Article in Biodiversity and Conservation