Search research publications and outputs

  1. 2013
  2. Identification of crop cultivars with consistently high lignocellulosic sugar release requires the use of appropriate statistical design and modelling.

    Oakey, H., Shafiei, R., Comadran, J., Uzrek, N., Cullis, B., Gomez, L., Whitehead, C., McQueen Mason, S. J., Waugh, R. & Halpin, C., 21 Dec 2013

    Article in Biotechnology for biofuels

  3. Microarray analyses demonstrate the involvement of type I interferons in psoriasiform pathology development in D6-deficient mice

    Baldwin, H. M., Pallas, K., King, V., Jamieson, T., McKimmie, C. S., Nibbs, R. J. B., Carballido, J. M., Jaritz, M., Rot, A. & Graham, G. J., 20 Dec 2013

    Article in The Journal of biological chemistry

  4. Hexanucleotide Repeats in ALS/FTD Form Length-Dependent RNA Foci, Sequester RNA Binding Proteins, and Are Neurotoxic

    Lee, Y., Chen, H-J., Peres, J. N., Gomez Deza, J., Attig, J., Stalekar, M., Troakes, C., Nishimura, A. L., Scotter, E. L., Vance, C., Adachi, Y., Sardone, V., Miller, J. W., Smith, B. N., Gallo, J-M., Ule, J., Hirth, F., Rogelj, B., Houart, C. & Shaw, C. E., 12 Dec 2013

    Article in Cell reports

  5. Human Allogeneic Bone Marrow and Adipose Tissue Derived Mesenchymal Stromal Cells Induce CD8+ Cytotoxic T Cell Reactivity

    Roemeling-van Rhijn, M., Reinders, M. E., Franquesa, M., Engela, A. U., Korevaar, S. S., Roelofs, H., Genever, P. G., Ijzermans, J. N., Betjes, M. G., Baan, C. C., Weimar, W. & Hoogduijn, M. J., 12 Dec 2013

    Article in Journal of stem cell research & therapy

  6. Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

    Tisserant, E., Malbreil, M., Kuo, A., Kohler, A., Symeonidi, A., Balestrini, R., Charron, P., Duensing, N., Frei dit Frey, N., Gianinazzi-Pearson, V., Gilbert, L. B., Handa, Y., Herr, J. R., Hijri, M., Koul, R., Kawaguchi, M., Krajinski, F., Lammers, P. J., Masclaux, F. G., Murat, C. & 24 others, Morin, E., Ndikumana, S., Pagni, M., Petitpierre, D., Requena, N., Rosikiewicz, P., Riley, R., Saito, K., San Clemente, H., Shapiro, H., van Tuinen, D., Bécard, G., Bonfante, P., Paszkowski, U., Shachar-Hill, Y. Y., Tuskan, G. A., Young, J. P. W., Sanders, I. R., Henrissat, B., Rensing, S. A., Grigoriev, I. V., Corradi, N., Roux, C. & Martin, F., 10 Dec 2013

    Article in Proceedings of the National Academy of Sciences of the United States of America

  7. Invasive ants-are fire ants drivers of biodiversity loss?

    Hill, J. K., Rosengaus, R. B., Gilbert, F. S. & Hart, A. G., 1 Dec 2013

    Article in Ecological entomology

  8. Observed and predicted effects of climate change on species abundance in protected areas

    Johnston, A., Ausden, M., Dodd, A. M., Bradbury, R. B., Chamberlain, D. E., Jiguet, F., Thomas, C. D., Cook, A. S. C. P., Newson, S. E., Ockendon, N., Rehfisch, M. M., Roos, S., Thaxter, C. B., Brown, A., Crick, H. Q. P., Douse, A., McCall, R. A., Pontier, H., Stroud, D. A., Cadiou, B. & 4 others, Crowe, O., Deceuninck, B., Hornman, M. & Pearce-Higgins, J. W., Dec 2013

    Article in Nature Climate Change

  9. Accelerated growth in the absence of DNA replication origins

    Hawkins, M., Malla, S., Blythe, M. J., Nieduszynski, C. A. & Allers, T., 28 Nov 2013

    Article in Nature

  10. High-resolution replication profiles define the stochastic nature of genome replication initiation and termination

    Hawkins, M., Retkute, R., Müller, C. A., Saner, N., Tanaka, T. U., de Moura, A. P. S. & Nieduszynski, C. A., 27 Nov 2013

    Article in Cell reports

  11. Homotypic vacuole fusion in yeast requires organelle acidification and not the V-ATPase membrane domain

    Coonrod, E. M., Graham, L. A., Carpp, L. N., Carr, T. M., Stirrat, L., Bowers, K., Bryant, N. J. & Stevens, T. H., 25 Nov 2013

    Article in Developmental Cell

  12. Human Bone Marrow- and Adipose Tissue-derived Mesenchymal Stromal Cells are Immunosuppressive In vitro and in a Humanized Allograft Rejection Model

    Roemeling-van Rhijn, M., Khairoun, M., Korevaar, S. S., Lievers, E., Leuning, D. G., Ijzermans, J. N., Betjes, M. G., Genever, P. G., van Kooten, C., de Fijter, H. J., Rabelink, T. J., Baan, C. C., Weimar, W., Roelofs, H., Hoogduijn, M. J. & Reinders, M. E., 25 Nov 2013

    Article in Journal of stem cell research & therapy

  13. Different stress responsive strategies to drought and heat in two durum wheat cultivars with contrasting water use efficiency

    Aprile, A., Havlickova, L., Panna, R., Marè, C., Borrelli, G. M., Marone, D., Perrotta, C., Rampino, P., De Bellis, L., Curn, V., Mastrangelo, A. M., Rizza, F. & Cattivelli, L., 22 Nov 2013

    Article in BMC Genomics

  14. The effect of temperature on Anopheles mosquito population dynamics and the potential for malaria transmission

    Beck-Johnson, L. M., Nelson, W. A., Paaijmans, K. P., Read, A. F., Thomas, M. B. & Bjørnstad, O. N., 14 Nov 2013

    Article in PLoS ONE

  15. Rapid metabolic pathway assembly and modification using serine integrase site-specific recombination

    Colloms, S. D., Merrick, C. A., Olorunniji, F. J., Stark, W. M., Smith, M. C. M., Osbourn, A., Keasling, J. D. & Rosser, S. J., 12 Nov 2013

    Article in Nucleic Acids Research

  16. Autocrine TNF-α production supports CML stem and progenitor cell survival and enhances their proliferation

    Gallipoli, P., Pellicano, F., Morrison, H., Laidlaw, K., Allan, E. K., Bhatia, R., Copland, M., Jørgensen, H. G. & Holyoake, T. L., 7 Nov 2013

    Article in Blood

  17. Regulation of pituitary tumor transforming gene (PTTG) expression and phosphorylation in thyroid cells

    Lewy, G. D., Ryan, G. A., Read, M. L., Fong, J. C. W., Poole, V., Seed, R. I., Sharma, N., Smith, V. E., Kwan, P. P. K., Stewart, S. L., Bacon, A., Warfield, A., Franklyn, J. A., McCabe, C. J. & Boelaert, K., 1 Nov 2013

    Article in Clinical endocrinology

  18. Trypanosoma brucei cathepsin-L increases arrhythmogenic sarcoplasmic reticulum-mediated calcium release in rat cardiomyocytes

    Elliott, E. B., McCarroll, D., Hasumi, H., Welsh, C. E., Panissidi, A. A., Jones, N. G., Rossor, C. L., Tait, A., Smith, G. L., Mottram, J. C., Morrison, L. J. & Loughrey, C. M., 1 Nov 2013

    Article in Cardiovascular research

  19. An inhibitor of oil body mobilization in Arabidopsis.

    Brown, L-A., Larson, T., Graham, I. A., Hawes, C., Paudyal, R., Warriner, S. & Baker, A., Nov 2013

    Article in New Phytologist

  20. Genome-wide evidence for speciation with gene flow in Heliconius butterflies

    Martin, S. H., Dasmahapatra, K. K., Nadeau, N. J., Salazar, C., Walters, J. R., Simpson, F., Blaxter, M. L., manica, A., Mallet, J. & Jiggins, C. D., Nov 2013

    Article in Genome Research

  21. Ten lessons for the conservation of African savannah ecosystems

    Beale, C. M., Rensberg, S. V., Bond, W. J., Coughenour, M., Fynn, R., Gaylard, A., Grant, R., Harris, B., Jones, T., Mduma, S., Owen-Smith, N. & Sinclair, A. R. E., Nov 2013

    Article in Biological Conservation

  22. Photosynthetic entrainment of the Arabidopsis thaliana circadian clock

    Haydon, M. J., Mielczarek, O., Robertson, F. C., Hubbard, K. E. & Webb, A. A. R., 31 Oct 2013

    Article in Nature

  23. IL-4 directly signals tissue-resident macrophages to proliferate beyond homeostatic levels controlled by CSF-1

    Jenkins, S. J., Ruckerl, D., Thomas, G. D., Hewitson, J. P., Duncan, S., Brombacher, F., Maizels, R. M., Hume, D. A. & Allen, J. E., 21 Oct 2013

    Article in The Journal of experimental medicine

  24. The conserved C-terminus of the PcrA/UvrD helicase interacts directly with RNA polymerase

    Gwynn, E. J., Smith, A. J., Guy, C. P., Savery, N. J., McGlynn, P. & Dillingham, M. S., 16 Oct 2013

    Article in PLoS ONE

  25. Nerve hyperplasia: a unique feature of ketamine cystitis

    Baker, S. C., Stahlschmidt, J., Oxley, J., Hinley, J., Eardley, I., Marsh, F., Gillatt, D., Fulford, S. & Southgate, J., 8 Oct 2013

    Article in Acta neuropathologica communications

  26. TIME for COFFEE is an essential component in the maintenance of metabolic homeostasis in Arabidopsis thaliana

    Sanchez-Villarreal, A., Shin, J., Bujdoso, N., Obata, T., Neumann, U., Du, S-X., Ding, Z., Davis, A. M., Shindo, T., Schmelzer, E., Sulpice, R., Nunes-Nesi, A., Stitt, M., Fernie, A. R. & Davis, S. J., 1 Oct 2013

    Article in The Plant journal

  27. Divergent evolutionary processes associated with colonization of offshore islands

    Martínková, N., Barnett, R., Cucchi, T., Struchen, R., Pascal, M., Pascal, M., Fischer, M. C., Higham, T., Brace, S., Ho, S. Y. W., Quéré, J-P., O'Higgins, P., Excoffier, L., Heckel, G., Hoelzel, A. R., Dobney, K. M. & Searle, J. B., Oct 2013

    Article in Molecular Ecology

  28. Fluctuating temperature leads to evolution of thermal generalism and preadaptation to novel environments

    Ketola, T., Mikonranta, L., Zhang, J., Saarinen, K., Ormälä, A-M., Friman, V-P., Mappes, J. & Laakso, J., Oct 2013

    Article in Evolution: international journal of organic evolution

  29. Genetic diversity of yacon (Smallanthus sonchifolius (Poepp. & Endl.) H. Robinson) and its wild relatives as revealed by ISSR markers

    Svobodová, E., Dvořáková, Z., Čepková, P. H., Viehmannová, I., Havlíčková, L., Cusimamani, E. F., Russo, D. & Meza Zela, G., Oct 2013

    Article in Biochemical systematics and ecology

  30. Linkage mapping in the oilseed crop Jatropha curcas L. reveals a locus controlling the biosynthesis of phorbol esters which cause seed toxicity.

    King, A. J., Montes, L., Clarke, J. G., Affleck, J., Li, Y., Witsenboer, H., van der Vossen, E., van der Linde, P., Tripathi, Y., Tavares, E., Shukla, P., Rajasekaran, T., van Loo, E. & Graham, I. A., Oct 2013

    Article in Plant biotechnology journal

  31. Pro-inflammatory cytokines can act as intracellular modulators of commensal bacterial virulence

    Mahdavi, J., Royer, P-J., Sjölinder, H. S., Azimi, S., Self, T., Stoof, J., Wheldon, L. M., Brännström, K., Wilson, R., Moreton, J., Moir, J. W. B., Sihlbom, C., Borén, T., Jonsson, A-B., Soultanas, P. & Ala'Aldeen, D. A. A., Oct 2013

    Article in Open Biology

  32. Stochastic association of neighboring replicons creates replication factories in budding yeast

    Saner, N., Karschau, J., Natsume, T., Gierlinski, M., Retkute, R., Hawkins, M., Nieduszynski, C. A., Blow, J. J., de Moura, A. P. S. & Tanaka, T. U., 30 Sep 2013

    Article in Journal of Cell Biology

  33. Horizontally Transmitted Symbionts and Host Colonization of Ecological Niches

    Henry, L., Peccoud, J., Simon, J-C., Hadfield, J., Maiden, M. C. J., Ferrari, J. & Godfray, H. C. J., 9 Sep 2013

    Article in Current Biology

  34. DELLA-interacting SWI3C core subunit of switch/sucrose nonfermenting chromatin remodeling complex modulates gibberellin responses and hormonal cross talk in Arabidopsis

    Sarnowska, E. A., Rolicka, A. T., Bucior, E., Cwiek, P., Tohge, T., Fernie, A. R., Jikumaru, Y., Kamiya, Y., Franzen, R., Schmelzer, E., Porri, A., Sacharowski, S., Gratkowska, D. M., Zugaj, D. L., Taff, A., Zalewska, A., Archacki, R., Davis, S. J., Coupland, G., Koncz, C. & 2 others, Jerzmanowski, A. & Sarnowski, T. J., Sep 2013

    Article in Plant Physiology

  35. Intranasal immunization of lambs with serine/threonine phosphatase 2A against gastrointestinal nematodes.

    Mohamed Fawzi, M., Cruz Bustos, T., Gomez Samblas, M. M., Gonzalez, G., Solano, J., Gonzalez Sanchez, ME., De Pablos Torro, L. M., Corral Caridad, MJ., Cuquerella, M., Osuna, A. & Alunda, JM., Sep 2013

    Article in Clinical and Vaccine Immunology

  36. Evolutionary relationships within actinophages and a putative adaptation for growth in Streptomyces spp

    Smith, M. C. M., Hendrix, R. W., Dedrick, R., Mitchell, K., Ko, C-C., Russell, D., Bell, E., Gregory, M., Bibb, M. J., Pethick, F., Jacobs-Sera, D., Herron, P., Buttner, M. J. & Hatfull, G. F., 30 Aug 2013

    Article in Journal of Bacteriology

  37. James et al. reply

    James, A., Pitchford, J. W. & Plank, M. J., 22 Aug 2013

    Article in Nature

  38. Sequencing-based variant detection in the polyploid crop oilseed rape

    Wells, R., Trick, M., Fraser, F., Soumpourou, E., Clissold, L., Morgan, C., Pauquet, J. & Bancroft, I., 6 Aug 2013

    Article in BMC Plant Biology

  39. The Lin28b-let-7-Hmga2 axis determines the higher self-renewal potential of fetal haematopoietic stem cells.

    Copley, MR., Babovic, S., Benz, C., Knapp, DJHF., Beer, PA., Kent, DG., Wohrer, S., Treloar, DQ., Day, C. & Rowe, K., 1 Aug 2013

    Article in Nature Cell Biology

  40. Genomic architecture of adaptive color pattern divergence and convergence in Heliconius butterflies

    Supple, M. A., Hines, H. M., Dasmahapatra, K. K., Lewis, J. J., Nielsen, D., Lavoie, C., Ray, D. A., Salazar, C., McMillan, W. O. & Counterman, B. A., Aug 2013

    Article in Genome Research

  41. Modulating malaria with wolbachia

    Killeen, G. F., Thomas, M. B. & Greenwood, B., Aug 2013

    Article in Nature Medicine

  42. Rhamnolipids are conserved biosurfactants molecules: implications for their biotechnological potential

    Perfumo, A., Rudden, M., Smyth, T. J. P., Marchant, R., Stevenson, P. S., Parry, N. J. & Banat, I. M., Aug 2013

    Article in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

  43. Secretion of protective antigens by tissue-stage nematode larvae revealed by proteomic analysis and vaccination-induced sterile immunity

    Hewitson, J. P., Ivens, A. C., Harcus, Y., Filbey, K. J., McSorley, H. J., Murray, J., Bridgett, S., Ashford, D., Dowle, A. A. & Maizels, R. M., Aug 2013

    Article in PLOS PATHOGENS

  44. Temperature variation makes ectotherms more sensitive to climate change

    Paaijmans, K. P., Heinig, R. L., Seliga, R. A., Blanford, J. I., Blanford, S., Murdock, C. C. & Thomas, M. B., Aug 2013

    Article in Global Change Biology

  45. A Mitogenomic Phylogeny of Living Primates

    Finstermeier, K., Meyer, M., Kreuz, E., Hofreiter, M., Zinner, D., Brameier, M. & Roos, C., 16 Jul 2013

    Article in PLoS ONE

  46. JAK-STAT blockade inhibits tumor initiation and clonogenic recovery of prostate cancer stem-like cells

    Kroon, P., Berry, P. A., Stower, M. J., Rodrigues, G., Mann, V. M., Simms, M., Bhasin, D., Chettiar, S., Li, C., Li, P-K., Maitland, N. J. & Collins, A. T., 3 Jul 2013

    Article in Cancer research

  47. Applications of search in biology: Some open problems

    Pitchford, J., 1 Jul 2013, Search Theory: A Game Theoretic Perspective. Springer, New York, Vol. 9781461468257. p. 295-303 9 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  48. Estimating West Nile virus transmission period in Pennsylvania using an optimized degree-day model

    Chen, S., Blanford, J. I., Fleischer, S. J., Hutchinson, M., Saunders, M. C. & Thomas, M. B., 1 Jul 2013

    Article in Vector-Borne and Zoonotic Diseases

  49. Range expansion through fragmented landscapes under a variable climate

    Bennie, J., Lawson, C. R., Wilson, R. J., Hodgson, J. A., Thomas, C. D., Holloway, C. T. R., Roy, D. B. & Brereton, T., 1 Jul 2013

    Article in Ecology Letters

  50. Red noise increases extinction risk during rapid climate change

    Mustin, K., Dytham, C., Benton, T. G. & Travis, J. M. J., 1 Jul 2013

    Article in Diversity and Distributions

  51. A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves

    Hickman, R., Hill, C., Penfold, C. A., Breeze, E., Bowden, L., Moore, J. D., Zhang, P., Jackson, A., Cooke, E., Bewicke-Copley, F., Mead, A., Beynon, J., Wild, D. L., Denby, K. J., Ott, S. & Buchanan-Wollaston, V., Jul 2013

    Article in Plant Journal

  52. Female behaviour drives expression and evolution of gustatory receptors in butterflies

    Briscoe, A., Macias-Munoz, A., Kozak, K., Walters, J. R., Yuan, F., Jamie, G., Martin, S. H., Dasmahapatra, K. K., Ferguson, L. C., Mallet, J., Jacquin-Joly, E. & Jiggins, C. D., Jul 2013

    Article in PLoS Genetics

  53. The schistosome oesophageal gland: initiator of blood processing

    Li, X-H., de Castro-Borges, W., Parker-Manuel, S., Vance, G. M., Demarco, R., Neves, L. X., Evans, G. J. O. & Wilson, R. A., Jul 2013

    Article in PLOS NEGLECTED TROPICAL DISEASES

  54. Regulation of Trypanosoma brucei Total and Polysomal mRNA during Development within Its Mammalian Host

    Capewell, P., Monk, S., Ivens, A., Macgregor, P., Fenn, K., Walrad, P., Bringaud, F., Smith, T. K. & Matthews, K. R., 26 Jun 2013

    Article in PLoS ONE

  55. The circadian clock goes genomic

    Staiger, D., Shin, J., Johansson, M. & Davis, S. J., 24 Jun 2013

    Article in Genome biology

  56. The Thr224Asn mutation in the VPS45 gene is associated with the congenital neutropenia and primary myelofibrosis of infancy

    Stepensky, P., Saada, A., Cowan, M., Tabib, A., Fischer, U., Berkun, Y., Saleh, H., Simanovsky, N., Kogot-Levin, A., Weintraub, M., Ganaiem, H., Shaag, A., Zenvirt, S., Borkhardt, A., Elpeleg, O., Bryant, N. J. & Mevorach, D., 20 Jun 2013

    Article in Blood

  57. Cell-autonomous regulation of neutrophil migration by the D6 chemokine decoy receptor

    Rot, A., McKimmie, C., Burt, C. L., Pallas, K. J., Jamieson, T., Pruenster, M., Horuk, R., Nibbs, R. J. B. & Graham, G. J., 15 Jun 2013

    Article in Journal of Immunology

  58. Self-renewal of single mouse hematopoietic stem cells is reduced by JAK2V617F without compromising progenitor cell expansion.

    Kent, DG., Li, J., Tanna, H., Fink, J., Kirschner, K., Pask, DC., Silber, Y., Hamilton, TL., Sneade, R., Simons, BD. & Green, A. R., 4 Jun 2013

    Article in PLoS Biol

  59. Structural characterization of a unique marine animal family 7 cellobiohydrolase suggests a mechanism of cellulase salt tolerance

    Kern, M., McGeehan, J. E., Streeter, S. D., Martin, R. N. A., Besser, K., Elias, L., Eborall, W., Malyon, G. P., Payne, C. M., Himmel, M. E., Schnorr, K., Beckham, G. T., Cragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 3 Jun 2013

    Article in Proceedings of the National Academy of Sciences of the United States of America

  60. Bicaudal-D uses a parallel, homodimeric coiled coil with heterotypic registry to coordinate recruitment of cargos to dynein.

    Liu, Y., Salter, HK., Holding, AN., Johnson, CM., Stephens, E., Lukavsky, PJ., Walshaw, J. & Bullock, SL., 1 Jun 2013

    Article in Genes and Development

  61. Capturing protein-coding genes across highly divergent species

    Li, C., Hofreiter, M., Straube, N., Corrigan, S. & Naylor, G. J. P., 1 Jun 2013

    Article in Biotechniques

  62. Effects of late quaternary climate change on Palearctic shrews

    Prost, S., Stiller, M., Hofreiter, M., Klietmann, J., Nagel, D., Rabeder, G., Van Kolfschoten, T., Guralnick, R. P., Waltari, E., Vrieling, K. & Sommer, R. S., 1 Jun 2013

    Article in Global Change Biology

  63. Getting the measure of ecosystem services: a social–ecological approach

    Hejnowicz, A. P., Reyers, B., Elmqvist, T., Biggs, R., Cumming, G. & Polasky, S., 1 Jun 2013

    Article in Frontiers in Ecology and the Environment

  64. Losing ground: Past history and future fate of Arctic small mammals in a changing climate

    Prost, S., Guralnick, R. P., Waltari, E., Fedorov, V. B., Kuzmina, E., Smirnov, N., van Kolfschoten, T., Hofreiter, M. & Vrieling, K., 1 Jun 2013

    Article in Global Change Biology

  65. Adaptive Robotic Gait Control using coupled Artificial Signalling Networks, Hopf Oscillators and Inverse Kinematics

    Fuente, L. A., Lones, M. A., Turner, A. P., Caves, L., Stepney, S. & Tyrrell, A., Jun 2013, p. 1435-1442.

    Research output: Contribution to conferencePaperpeer-review

  66. Bourgeois behaviour and freeloading in the colonial orb-web spider Parawixia bistriata (Araneae, Araneidae)

    Wenseleers, T., Bacon, J., Alves, D. A., Couvillon, M. J., Kärcher, M., Nascimento, F. S., Nogueira-Neto, P., Robinson, E. J. H., Tofilski, A. & Ratnieks, F. L. W., Jun 2013

    Article in AMERICAN NATURALIST

  67. Biochemical and structural studies of plant circadian clock proteins

    Saini, R., Szpotkowski, K., Kozak, M., Jaskolski, M. & Davis, S. J., 20 May 2013

    Article in Biotechnologia

  68. Malaria Mosquitoes Attracted by Fatal Fungus

    George, J., Jenkins, N. E., Blanford, S., Thomas, M. B. & Baker, T. C., 1 May 2013

    Article in PLoS ONE

  69. Metabolic regulation of circadian clocks

    Haydon, M. J., Hearn, T. J., Bell, L. J., Hannah, M. A. & Webb, A. A. R., May 2013

    Literature review in Seminars in cell & developmental biology

  70. Discriminating Fever Behavior in House Flies

    Anderson, R. D., Blanford, S., Jenkins, N. E. & Thomas, M. B., 19 Apr 2013

    Article in PLoS ONE

  71. Protein-DNA complexes are the primary sources of replication fork pausing in Escherichia coli

    Gupta, M. K., Guy, C. P., Yeeles, J. T. P., Atkinson, J., Bell, H., Lloyd, R. G., Marians, K. J. & McGlynn, P., 15 Apr 2013

    Article in Proceedings of the National Academy of Sciences of the United States of America

  72. Key role for a glutathione transferase in multiple-herbicide resistance in grass weeds

    Cummins, I., Wortley, D. J., Sabbadin, F., He, Z., Coxon, C. R., Straker, H. E., Sellars, J. D., Knight, K., Edwards, L., Hughes, D., Kaundun, S. S., Hutchings, S-J., Steel, P. G. & Edwards, R., 9 Apr 2013

    Article in Proceedings of the National Academy of Sciences of the United States of America

  73. A preclinical xenograft model of prostate cancer using human tumors

    Lawrence, M. G., Taylor, R. A., Toivanen, R., Pedersen, J., Norden, S., Pook, D. W., Frydenberg, M., Papargiris, M. M., Niranjan, B., Richards, M. G., Wang, H., Collins, A. T., Maitland, N. J., Risbridger, G. P. & Australian Prostate Cancer BioResource, 4 Apr 2013

    Article in Nature Protocols

  74. Endosomal sorting of GLUT4 and Gap1 is conserved between yeast and insulin-sensitive cells

    Shewan, A. M., McCann, R. K., Lamb, C. A., Stirrat, L., Kioumourtzoglou, D., Adamson, I. S., Verma, S., James, D. E. & Bryant, N. J., 1 Apr 2013

    Article in Journal of Cell Science

  75. Multi-generational long-distance migration of insects: Studying the painted lady butterfly in the Western Palaearctic

    Stefanescu, C., Páramo, F., Åkesson, S., Alarcón, M., Ávila, A., Brereton, T., Carnicer, J., Cassar, L. F., Fox, R., Heliölä, J., Hill, J. K., Hirneisen, N., Kjellén, N., Kühn, E., Kuussaari, M., Leskinen, M., Liechti, F., Musche, M., Regan, E. C., Reynolds, D. R. & 7 others, Roy, D. B., Ryrholm, N., Schmaljohann, H., Settele, J., Thomas, C. D., van Swaay, C. & Chapman, J. W., 1 Apr 2013

    Article in Ecography

  76. Arabidopsis Sec1/Munc18 protein SEC11 is a competitive and dynamic modulator of SNARE binding and SYP121-dependent vesicle traffic

    Karnik, R., Grefen, C., Bayne, R., Honsbein, A., Köhler, T., Kioumourtzoglou, D., Williams, M., Bryant, N. J. & Blatt, M. R., Apr 2013

    Article in The Plant Cell

  77. Gene-for-gene tolerance to bacterial wilt in Arabidopsis

    Van Der Linden, L., Bredenkamp, J., Naidoo, S., Fouché-Weich, J., Denby, K. J., Genin, S., Marco, Y. & Berger, D. K., Apr 2013

    Article in MOLECULAR PLANT-MICROBE INTERACTIONS

  78. Loss and gain of Drosophila TDP-43 impair synaptic efficacy and motor control leading to age-related neurodegeneration by loss-of-function phenotypes

    Diaper, D. C., Adachi, Y., Sutcliffe, B., Humphrey, D. M., Elliott, C. J. H., Stepto, A., Ludlow, Z. N., Vanden Broeck, L., Callaerts, P., Dermaut, B., Al-Chalabi, A., Shaw, C. E., Robinson, I. M. & Hirth, F., Apr 2013

    Article in Human Molecular Genetics

  79. The Artificial Epigenetic Network

    Turner, A. P., Lones, M. A., Fuente, L. A., Stepney, S., Caves, L. & Tyrrell, A., Apr 2013, p. 66-72.

    Research output: Contribution to conferencePaperpeer-review

  80. Monoallelic expression of TMPRSS2/ERG in prostate cancer stem cells

    Polson, E. S., Lewis, J. L., Celik, H., Mann, V. M., Stower, M. J., Simms, M. S., Rodrigues, G., Collins, A. T. & Maitland, N. J., 27 Mar 2013

    Article in Nature Communications

  81. Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida

    Collén, J., Porcel, B., Carré, W., Ball, S. G., Chaparro, C., Tonon, T., Barbeyron, T., Michel, G., Noel, B., Valentin, K., Elias, M., Artiguenave, F., Arun, A., Aury, J-M., Barbosa-Neto, J. F., Bothwell, J. H., Bouget, F-Y., Brillet, L., Cabello-Hurtado, F., Capella-Gutiérrez, S. & 38 others, Charrier, B., Cladière, L., Cock, J. M., Coelho, S. M., Colleoni, C., Czjzek, M., Da Silva, C., Delage, L., Denoeud, F., Deschamps, P., Dittami, S. M., Gabaldón, T., Gachon, C. M. M., Groisillier, A., Hervé, C., Jabbari, K., Katinka, M., Kloareg, B., Kowalczyk, N., Labadie, K., Leblanc, C., Lopez, P. J., McLachlan, D. H., Meslet-Cladiere, L., Moustafa, A., Nehr, Z., Nyvall Collén, P., Panaud, O., Partensky, F., Poulain, J., Rensing, S. A., Rousvoal, S., Samson, G., Symeonidi, A., Weissenbach, J., Zambounis, A., Wincker, P. & Boyen, C., 26 Mar 2013

    Article in Proceedings of the National Academy of Sciences of the United States of America

  82. An enzymatic route to selenazolines

    Koehnke, J., Morawitz, F., Bent, A. F., Houssen, W. E., Shirran, S. L., Fuszard, M. A., Smellie, I. A., Botting, C. H., Smith, M. C. M., Jaspars, M. & Naismith, J. H., 18 Mar 2013

    Article in Chembiochem

  83. BRAHMA ATPase of the SWI/SNF chromatin remodeling complex acts as a positive regulator of gibberellin: mediated responses in arabidopsis

    Archacki, R., Buszewicz, D., Sarnowski, T. J., Sarnowska, E., Rolicka, A. T., Tohge, T., Fernie, A. R., Jikumaru, Y., Kotlinski, M., Iwanicka-Nowicka, R., Kalisiak, K., Patryn, J., Halibart-Puzio, J., Kamiya, Y., Davis, S. J., Koblowska, M. K. & Jerzmanowski, A., 11 Mar 2013

    Article in PLoS ONE

  84. COG complexes form spatial landmarks for distinct SNARE complexes

    Willett, R., Kudlyk, T., Pokrovskaya, I., Schönherr, R., Ungar, D., Duden, R. & Lupashin, V., 5 Mar 2013

    Article in Nature Communications

  85. Modeling HEDLA magnetic field generation experiments on laser facilities

    Fatenejad, M., Flocke, N., Lamb, D., Lee, D., Scopatz, A., Tzeferacos, P., Weide, K., Bell, A. R., Gregori, G., Meinecke, J., Murphy, C. D., Ravasio, A., Reville, B., Koenig, M., Marques, J. R., Pelka, A., Yurchak, R., Park, H-S., Remington, B., Benuzzi-Mounaix, A. & 6 others, Miniati, F., Drake, R. P., Krauland, C., Young, R., Crowston, R. & Woolsey, N., 1 Mar 2013

    Article in HIGH ENERGY DENSITY PHYSICS

  86. Packaging signals in single-stranded RNA viruses: Nature's alternative to a purely electrostatic assembly mechanism

    Stockley, P. G., Twarock, R., Bakker, S. E., Barker, A. M., Borodavka, A., Dykeman, E., Ford, R. J., Pearson, A. R., Phillips, S. E. V., Ranson, N. A. & Tuma, R., 1 Mar 2013

    Article in Journal of Biological Physics

  87. Simulation of laser-driven, ablated plasma flows in collisionless shock experiments on OMEGA and the NIF

    Grosskopf, M. J., Drake, R. P., Kuranz, C. C., Rutter, E. M., Ross, J. S., Kugland, N. L., Plechaty, C., Remington, B. A., Park, H-S., Spitkovsky, A., Gargate, L., Gregori, G., Bell, A., Murphy, C. D., Meinecke, J., Reville, B., Sakawa, Y., Kuramitsu, Y., Takabe, H., Froula, D. H. & 7 others, Fiksel, G., Miniati, F., Koenig, M., Ravasio, A., Liang, E., Fu, W. & Woolsey, N., 1 Mar 2013

    Article in HIGH ENERGY DENSITY PHYSICS

  88. The novel NhaE-type Na(+)/H (+) antiporter of the pathogenic bacterium Neisseria meningitidis

    Sousa, P. M. F., Videira, M. A. M., Vorburger, T., Silva, S. T. N., Moir, J. W., Steuber, J. & Melo, A. M. P., Mar 2013

    Article in Archives of microbiology

  89. The RNA-binding region of human TRBP interacts with microRNA precursors through two independent domains

    Benoit, M. P. M. H., Imbert, L., Palencia, A., Pérard, J., Ebel, C., Boisbouvier, J. & Plevin, M. J., 21 Feb 2013

    Article in Nucleic Acids Research

  90. A chemokine self-presentation mechanism involving formation of endothelial surface microstructures

    Whittall, C., Kehoe, O., King, S., Rot, A., Patterson, A. & Middleton, J., 15 Feb 2013

    Article in Journal of Immunology

  91. Molecular insights into vesicle tethering at the Golgi by the Conserved Oligomeric Golgi (COG) complex and the golgin TMF

    Miller, V. J., Sharma, P., Kudlyk, T. A., Frost, L., Rofe, A. P., Watson, I. J., Duden, R., Lowe, M., Lupashin, V. V. & Ungar, D., 8 Feb 2013

    Article in Journal of Biological Chemistry

  92. Mammalian cell entry genes in Streptomyces may provide clues to the evolution of bacterial virulence

    Clark, L. C., Seipke, R. F., Prieto, P., Willemse, J., Van Wezel, G. P., Hutchings, M. I. & Hoskisson, P. A., 6 Feb 2013

    Article in Scientific Reports

  93. Burkholderia diazotrophica sp. nov., isolated from root nodules of Mimosa spp

    Sheu, S-Y., Chou, J-H., Bontemps, C., Elliott, G. N., Gross, E., dos Reis Junior, F. B., Melkonian, R., Moulin, L., James, E. K., Sprent, J. I., Young, J. P. W. & Chen, W-M., Feb 2013

    Article in International journal of systematic and evolutionary microbiology

  94. Disrupting the cynnamil alcohol dehydrogenase 1 gene (BdCAD1) leads to altered lignification and improved saccharification in Brachypodium distachyon.

    M.B d'Yvoire, O. Bouchabke-Coussa, W.Voorend, S. Antelme, L. Cezard, F. Legee, P. Lebris, S. Legay, Whitehead, C. B., McQueen Mason, S. J., Gomez, L. D., L. Jouanin, C. Lapierre & R. Sibout, Feb 2013

    Article in Plant Journal

  95. Genome-wide patterns of divergence and gene flow across a butterfly radiation

    Nadeau, N., Martin, S., Kozak, K., Salazar, C., Dasmahapatra, K. K., Davey, J., Baxter, S., Blaxter, M., Mallet, J. & Jiggins, C., Feb 2013

    Article in Molecular Ecology

  96. Unrelated facultative endosymbionts protect aphids against a fungal pathogen

    Lukasik, P., van Asch, M., Guo, H., Ferrari, J. & Godfray, H. C. J., Feb 2013

    Article in Ecology Letters

  97. The effects of methionine acquisition and synthesis on Streptococcus pneumoniae growth and virulence

    Basavanna, S., Chimalapati, S., Maqbool, A., Rubbo, B., Yuste, J., Wilson, R. J., Hosie, A., Ogunniyi, A. D., Paton, J. C., Thomas, G. & Brown, J. S., 29 Jan 2013

    Article in PLoS ONE

  98. Deep Sequencing of RNA from Ancient Maize Kernels

    Fordyce, S. L., Ávila-Arcos, M. C., Rasmussen, M., Cappellini, E., Romero-Navarro, J. A., Wales, N., Alquezar-Planas, D. E., Penfield, S., Brown, T. A., Vielle-Calzada, J. P., Montiel, R., Jørgensen, T., Odegaard, N., Jacobs, M., Arriaza, B., Higham, T. F. G., Ramsey, C. B., Willerslev, E. & Gilbert, M. T. P., 17 Jan 2013

    Article in PLoS ONE

  99. Policy review: outdoor pursuits

    Thomas, C. D., 17 Jan 2013, The House Parliament's Magazine, p. 32 1 p.

    Research output: Contribution to specialist publicationBook/Film/Article review

  100. A genetically distinct lion (Panthera leo) population from Ethiopia

    Bruche, S., Lippold, S., Hofreiter, M., Gusset, M., Eulenberger, K., Junhold, J., Driscoll, C. A. & Barnett, R., 1 Jan 2013

    Article in European Journal of Wildlife Research

  101. Palaeolithic dogs and the early domestication of the wolf: A reply to the comments of Crockford and Kuzmin (2012)

    Germonpré, M., Sablin, M. V., Després, V., Hofreiter, M., Lázničková-Galetová, M., Stevens, R. E. & Stiller, M., 1 Jan 2013

    Article in Journal of archaeological science

  102. The impact of increased food availability on survival of a long-distance migratory bird

    Seward, A. M., Jones, T. H., Thomas, R. J., Beale, C. M. & Gilbert, L., 1 Jan 2013

    Article in Ecology

  103. Life in cells, hosts, and vectors: parasite evolution across scales

    Mideo, N., Acosta-Serrano, A., Aebischer, T., Brown, M. J. F., Fenton, A., Friman, V-P., Restif, O., Reece, S. E., Webster, J. P. & Brown, S. P., Jan 2013

    Article in Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases

  104. A full-length recombinant Plasmodium falciparum PfRH5 protein induces inhibitory antibodies that are effective across common PfRH5 genetic variants.

    Bustamante, L. Y., Bartholdson, S. J., Crosnier, C., Campos, M. G., Wanaguru, M., Nguon, C., Kwiatkowski, D. P., Wright, G. J. & Rayner, J. C., 2013

    Article in Vaccine

  105. An invasive Mimosa in India does not adopt the symbionts of its native relatives

    Gehlot, H. S., Tak, N., Kaushik, M., Mitra, S., Chen, W-M., Poweleit, N., Panwar, D., Poonar, N., Parihar, R., Tak, A., Sankhla, I. S., Ojha, A., Rao, S. R., Simon, M. F., Reis Junior, F. B. D., Perigolo, N., Tripathi, A. K., Sprent, J. I., Young, J. P. W., James, E. K. & 1 others, Gyaneshwar, P., 2013

    Article in Annals of Botany

  106. Catalytic C–H/C–X Bond Functionalisation of Nucleosides, Nucleotides, Nucleic Acids, Amino Acids, Peptides and Proteins

    Fairlamb, I. J. S., De Ornellas, S., Williams, T. J. & Baumann, C. G., 2013, C–H and C–X Bond Functionalization: Transition Metal Mediation. Ribas, X. (ed.). 1 ed. United Kingdom: Royal Society of Chemistry, Vol. 11. p. 409-447 (RSC Catalysis Series; no. 11).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  107. Effect of rice cultivation systems on indigenous arbuscular mycorrhizal fungal community structure

    Watanarojanaporn, N., Boonkerd, N., Tittabutr, P., Longtonglang, A., Young, J. P. W. & Teaumroong, N., 2013

    Article in Microbes and environments

  108. Erratum: Corrigendum: The blood-stage malaria antigen PfRH5 is susceptible to vaccine-inducible cross-strain neutralizing antibody: Nature Communications

    Douglas, A. D., Williams, A. R., Illingworth, J. J., Kamuyu, G., Biswas, S., Goodman, A. L., Wyllie, D. H., Crosnier, C., Miura, K., Wright, G. J., Long, C. A., Osier, F. H., Marsh, K., Turner, A. V., Hill, A. V. S. & Draper, S. J., 2013

    Article in Nature Communications

  109. Helicases at the replication fork

    McGlynn, P., 2013, Advances in Experimental Medicine and Biology: DNA Helicases and DNA Motor Proteins. Spies, M. (ed.). New York, USA: Springer, Vol. 767. p. 97-121

    Research output: Chapter in Book/Report/Conference proceedingChapter

  110. Highly sensitive in vivo imaging of Trypanosoma brucei expressing "red-shifted" luciferase

    McLatchie, A., Burrell-Saward, H., Myburgh, E., Lewis, M., Ward, T., Mottram, J. C., Croft, S., Kelly, J. & Taylor, M., 2013

    Article in PLoS Negl Trop Dis.

  111. Impacts of ozone on regulating services

    Mills, G., Wagg, S., Harmens, H., Jones, L., Simpson, D., Bueker, P., Emberson, L. D., Power, S. A., Sitch, S., Bergmann, E. & Bender, J., 2013, Ozone Pollution: Impacts on ecosystem services and biodiversity. Mills, G., Wagg, S. & Harmens, H. (eds.). CP Vegetation Programme Coordination Centre, Centre for Ecology and Hydrology, Bangor, UK.: ICP Vegetation, p. 43-52 10 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  112. Implications of temperature variation for malaria parasite development across Africa

    Blanford, J. I., Blanford, S., Crane, R. G., Mann, M. E., Paaijmans, K. P., Schreiber, K. V. & Thomas, M. B., 2013

    Article in Scientific Reports

  113. In vivo imaging models for rapid drug screening studies in CNS involved trypanosomiasis

    Myburgh, E., Coles, J., Ritchie, R., Kennedy, P., McLatchie, A., Rodgers, J., Taylor, M., Barrett, M., Brewer, J. & Mottram, J. C., 2013

    Article in PLoS Negl Trop Dis.

  114. Intestinal intraepithelial lymphocyte-enterocyte crosstalk regulates production of bactericidal angiogenin 4 by Paneth cells upon microbial challenge

    Walker, C. R., Hautefort, I., Dalton, J. E., Overweg, K., Egan, C. E., Bongaerts, R. J., Newton, D. J., Cruickshank, S. M., Andrew, E. M. & Carding, S. R., 2013

    Article in PLoS ONE

  115. Mechanism of ubiquitin ligation and lysine prioritization by a HECT E3

    Kamadurai, H. B., Qiu, Y., Deng, A., Harrison, J. S., MacDonald, C., Actis, M., Rodrigues, P., Miller, D. J., Souphron, J., Lewis, S. M., Kurinov, I., Fujii, N., Hammel, M., Piper, R., Kuhlman, B. & Schulman, B. A., 2013

    Article in eLife

  116. Missense mutations in β-1,3-N-acetylglucosaminyltransferase 1 (B3GNT1) cause Walker-Warburg syndrome. Human Molecular Genetics

    Buysse, K., Riemersma, M., Powell, G., van Reeuwijk, J., Chitayat, D., Roscioli, T., Kamsteeg, E-J., van den Elzen, C., van Beusekom, E., Blaser, S., Babul-Hirji, R., Halliday, W., Wright, G. J., Stemple, D. L., Lin, Y-Y., Lefeber, D. J. & van Bokhoven, H., 2013

    Article in Hum Mol Genet

  117. Pan genome of the phytoplankton Emiliania underpins its global distribution

    Read, B. A., Kegel, J., Klute, M. J., Kuo, A., Lefebvre, S. C., Maumus, F., Mayer, C., Miller, J., Monier, A., Salamov, A., Young, J., Aguilar, M., Claverie, J. M., Frickenhaus, S., Gonzalez, K., Herman, E. K., Lin, Y. C., Napier, J., Ogata, H., Sarno, A. F. & 58 others, Shmutz, J., Schroeder, D., De Vargas, C., Verret, F., Von Dassow, P., Valentin, K., Van De Peer, Y., Wheeler, G., Dacks, J. B., Delwiche, C. F., Dyhrman, S. T., Glöckner, G., John, U., Richards, T., Worden, A. Z., Zhang, X., Grigoriev, I. V., Allen, A. E., Bidle, K., Borodovsky, M., Bowler, C., Brownlee, C., Mark Cock, J., Elias, M., Gladyshev, V. N., Groth, M., Guda, C., Hadaegh, A., Iglesias-Rodriguez, M. D., Jenkins, J., Jones, B. M., Lawson, T., Leese, F., Lindquist, E., Lobanov, A., Lomsadze, A., Malik, S. B., Marsh, M. E., Mackinder, L., Mock, T., Mueller-Roeber, B., Pagarete, A., Parker, M., Probert, I., Quesneville, H., Raines, C., Rensing, S. A., Riaño-Pachón, D. M., Richier, S., Rokitta, S., Shiraiwa, Y., Soanes, D. M., Van Der Giezen, M., Wahlund, T. M., Williams, B., Wilson, W., Wolfe, G. & Wurch, L. L., 2013

    Article in Nature

  118. Reconciling biodiversity and carbon conservation

    Thomas, C. D., Anderson, B. J., Moilanen, A., Eigenbrod, F., Heinemeyer, A., Quaife, T., Roy, D. B., Gillings, S., Armsworth, P. R. & Gaston, K. J., 2013

    Article in Ecology Letters

  119. Reconstructing genome evolution in historic samples of the Irish potato famine pathogen

    Martin, M. D., Cappellini, E., Samaniego, J. A., Zepeda Mendoza, M. L., Campos, P. F., Seguin-Orlando, A., Wales, N., Orlando, L., Ho, S. Y. W., Dietrich, F. S., Mieczkowski, P. A., Heitman, J., Willerslev, E., Krogh, A., Ristaino, J. B. & Gilbert, M. T. P., 2013

    Article in Nature Communications

  120. Single-molecule cellular biophysics

    Leake, M. C., 2013, Cambridge University Press.

    Research output: Book/ReportBook

  121. Tissue Engineering

    McCaskie, A., Genever, P. & De Bari, C., 2013, Oxford medicine online . Oxford: Oxford University Press

    Research output: Chapter in Book/Report/Conference proceedingChapter

  122. Trait-dependent declines of species following conversion of rain forest to oil palm plantations

    Senior, M. J. M., Hamer, K. C., Bottrell, S., Edwards, D. P., Fayle, T. M., Lucey, J. M., Mayhew, P. J., Newton, R., Peh, K. S-H., Sheldon, F. H., Stewart, C., Styring, A. R., Thom, M. D. F., Woodcock, P. & Hill, J. K., 2013

    Article in Biodiversity and Conservation