Search research publications and outputs

  1. 2014
  2. The DET1-COP1-HY5 Pathway Constitutes a Multipurpose Signaling Module Regulating Plant Photomorphogenesis and Thermomorphogenesis

    Delker, C., Sonntag, L., Velikkakam James, G., Janitza, P., Ibañez, C., Ziermann, H., Peterson, T., Denk, K., Mull, S., Ziegler, J., Davis, S. J., Schneeberger, K. & Quint, M., 24 Dec 2014

    Article in Cell reports

  3. Atmospheric composition and thermodynamic retrievals from the ARIES airborne TIR-FTS system - Part 2: Validation and results from aircraft campaigns

    Allen, G., Illingworth, S. M., O'Shea, S. J., Newman, S., Vance, A., Bauguitte, S. J. B., Marenco, F., Kent, J., Bower, K., Gallagher, M. W., Muller, J., Percival, C. J., Harlow, C., Lee, J. & Taylor, J. P., 12 Dec 2014

    Article in Atmospheric Measurement Techniques

  4. Class IIa histone deacetylases are conserved regulators of circadian function

    Fogg, P. C. M., O'Neill, J. S., Dobrzycki, T., Calvert, S., Lord, E. C., McIntosh, R. L. L., Elliott, C. J. H., Sweeney, S. T., Hastings, M. H. & Chawla, S., 5 Dec 2014

    Article in The Journal of biological chemistry

  5. Lytic activity by temperate phages of Pseudomonas aeruginosa in long-term cystic fibrosis chronic lung infections

    James, C. E., Davies, E. V., Fothergill, J. L., Walshaw, M. J., Beale, C. M., Brockhurst, M. A. & Winstanley, C., 2 Dec 2014

    Article in The ISME Journal

  6. Novel mutations in human and mouse SCN4A implicate AMPK in myotonia and periodic paralysis

    Corrochano, S., Männikkö, R., Joyce, P. I., McGoldrick, P., Wettstein, J., Lassi, G., Rayan, D. L. R., Blanco, G., Quinn, C., Liavas, A., Lionikas, A., Amior, N., Dick, J., Healy, E. G., Stewart, M., Carter, S., Hutchinson, M., Bentley, L., Fratta, P., Cortese, A. & 9 others, Cox, R., Brown, S. D. M., Tucci, V., Wackerhage, H., Amato, A. A., Greensmith, L., Koltzenburg, M., Hanna, M. G. & Acevedo-Arozena, A., 1 Dec 2014

    Article in Brain

  7. A zoospore inoculation method with Phytophthora Sojae to assess the prophylactic role of silicon on soybean cultivars

    Guérin, V., Lebreton, A., Cogliati, E. E., Hartley, S. E., Belzile, F., Menzies, J. G. & Bélanger, R. R., Dec 2014

    Article in Plant Disease

  8. Altered expression of an RBP-associated arginine methyltransferase 7 in Leishmania major affects parasite infection

    Ferreira, T. R., Ferreira, E. V. C. A., Defina, T. P. A., Walrad, P. B., Papadopoulou, B. & Cruz, A. K., Dec 2014

    Article in Molecular Microbiology

  9. Hybridization facilitates evolutionary rescue

    Stelkens, R. B., Brockhurst, M. A., Hurst, G. D. D. & Greig, D., Dec 2014

    Article in Evolutionary applications

  10. Localisation and interactions of the Vipp1 protein in cyanobacteria

    Bryan, S. J., Burroughs, N. J., Shevela, D., Yu, J., Rupprecht, E., Liu, L-N., Mastroianni, G., Xue, Q., Llorente-Garcia, I., Leake, M. C., Eichacker, L. A., Schneider, D., Nixon, P. J. & Mullineaux, C. W., Dec 2014

    Article in Molecular Microbiology

  11. Side by Side Comparison of Chemical Compounds Generated by Aqueous Pretreatments of Maize Stover, Miscanthus and Sugarcane Bagasse

    Gómez, L. D., Vanholme, R., Bird, S., Goeminne, G., Trindade, L. M., Polikarpov, I., Simister, R., Morreel, K., Boerjan, W. & McQueen Mason, S. J., Dec 2014

    Article in BioEnergy Research

  12. Drug Discovery for Human African Trypanosomiasis: Identification of Novel Scaffolds by the Newly Developed HTS/Sybr Green Assay for Trypanosoma brucei.

    Correia Faria, J. R., Borsoi Moraes, C., Song, R., Pascoalino, B. S., Lee, N., Siqueira-Neto, J. L., M Cruz, D. J., Parkinson, T., Loset, J-R., Cordeiro-da-Silva, A. & Freitas-Junior, L. H., 23 Nov 2014

    Article in Journal of biomolecular screening

  13. Independent Component Analysis Uncovers the Landscape of the Bladder Tumor Transcriptome and Reveals Insights into Luminal and Basal Subtypes

    Biton, A., Bernard-Pierrot, I., Lou, Y., Krucker, C., Chapeaublanc, E., Rubio-Pérez, C., López-Bigas, N., Kamoun, A., Neuzillet, Y., Gestraud, P., Grieco, L., Rebouissou, S., deReyniès, A., Benhamou, S., Lebret, T., Southgate, J., Barillot, E., Allory, Y., Zinovyev, A. & Radvanyi, F., 20 Nov 2014

    Article in Cell reports

  14. Nongenetic stochastic expansion of JAK2V617F-homozygous subclones in polycythemia vera?

    Godfrey, A. L., Nangalia, J., Baxter, E. J., Massie, CE., Kent, DG., Papaemmanuil, E., Campbell, P. J. & Green, AR., 20 Nov 2014

    Article in Blood

  15. Malaria mosquitoes host-locate and feed upon caterpillars

    George, J., Blanford, S., Thomas, M. B. & Baker, T. C., 5 Nov 2014

    Article in PLoS ONE

  16. High-resolution mapping of transcriptional dynamics across tissue development reveals a stable mRNA-tRNA interface

    Schmitt, B. M., Rudolph, K. L. M., Karagianni, P., Fonseca, N. A., White, R. J., Talianidis, I., Odom, D. T., Marioni, J. C. & Kutter, C., Nov 2014

    Article in Genome Research

  17. The evolution and genetics of virus host shifts

    Longdon, B., Brockhurst, M. A., Russell, C. A., Welch, J. J. & Jiggins, F. M., Nov 2014

    Article in PLOS PATHOGENS

  18. An Efficient Method for the In Vitro Production of Azol(in)e-Based Cyclic Peptides

    Houssen, W. E., Bent, A. F., McEwan, A. R., Pieiller, N., Tabudravu, J., Koehnke, J., Mann, G., Adaba, R. I., Thomas, L., Hawas, U. W., Liu, H., Schwarz-Linek, U., Smith, M. C. M., Naismith, J. H. & Jaspars, M., 21 Oct 2014

    Article in Angewandte Chemie International Edition

  19. Increased resistance to biotrophic pathogens in the arabidopsis constitutive induced resistance 1 mutant is EDS1 and PAD4-dependent and modulated by environmental temperature

    Carstens, M., McCrindle, T. K., Adams, N., Diener, A., Guzha, D. T., Murray, S. L., Parker, J. E., Denby, K. J. & Ingle, R. A., 10 Oct 2014

    Article in PLoS ONE

  20. Studies of the regulated assembly of SNARE complexes in adipocytes

    Kioumourtzoglou, D., Sadler, J. B. A., Black, H. L., Berends, R., Wellburn, C., Bryant, N. J. & Gould, G. W., 1 Oct 2014

    Article in Biochemical Society transactions

  21. Burkholderia sp. Induces Functional Nodules on the South African Invasive Legume Dipogon lignosus (Phaseoleae) in New Zealand Soils

    Liu, W. Y. Y., Ridgway, H. J., James, T. K., James, E. K., Chen, W-M., Sprent, J. I., Young, P. W. & Andrews, M., Oct 2014

    Article in Microbial Ecology

  22. The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond

    Prigent, S., Collet, G., Dittami, S. M., Delage, L., Ethis de Corny, F., Dameron, O., Eveillard, D., Thiele, S., Cambefort, J., Boyen, C., Siegel, A. & Tonon, T., Oct 2014

    Article in The Plant journal

  23. Global profiling of co- and post-translationally N-myristoylated proteomes in human cells

    Thinon, E., Serwa, R. A., Broncel, M., Brannigan, J. A., Brassat, U., Wright, M. H., Heal, W. P., Wilkinson, A. J., Mann, D. J. & Tate, E. W., 26 Sep 2014

    Article in Nature Communications

  24. Silicon, endophytes and secondary metabolites as grass defenses against mammalian herbivores

    Huitu, O., Forbes, K. M., Helander, M., Julkunen-Tiitto, R., Lambin, X., Saikkonen, K., Stuart, P., Sulkama, S. & Hartley, S., 17 Sep 2014

    Article in Frontiers in Plant Science

  25. MyD88 signaling inhibits protective immunity to the gastrointestinal helminth parasite Heligmosomoides polygyrus

    Reynolds, L. A., Harcus, Y., Smith, K. A., Webb, L. M., Hewitson, J. P., Ross, E. A., Brown, S., Uematsu, S., Akira, S., Gray, D., Gray, M., MacDonald, A. S., Cunningham, A. F. & Maizels, R. M., 15 Sep 2014

    Article in Journal of Immunology

  26. Actin Is Required for IFT Regulation in Chlamydomonas reinhardtii

    Avasthi, P., Onishi, M., Karpiak, J., Yamamoto, R., Mackinder, L., Jonikas, MC., Sale, WS., Shoichet, B., Pringle, JR. & Marshall, WF., 8 Sep 2014

    Article in Current Biology

  27. Abnormal visual gain control in a Parkinson's disease model

    Afsari, F., Christensen, K., Smith, G., Hentzer, M., Nippe, O., Elliott, C. & Wade, A., 1 Sep 2014

    Article in Human Molecular Genetics

  28. Mapping-by-Sequencing Identifies HvPHYTOCHROME C as a Candidate Gene for the early maturity 5 Locus Modulating the Circadian Clock and Photoperiodic Flowering in Barley

    Pankin, A., Campoli, C., Dong, X., Kilian, B., Sharma, R., Himmelbach, A., Saini, R., Davis, S. J., Stein, N., Schneeberger, K. & von Korff, M., 1 Sep 2014

    Article in Human Genetics

  29. Early allopolyploid evolution in the post-neolithic Brassica napus oilseed genome

    Chalhoub, B., Denoeud, F., Liu, S., Parkin, I. A. P., Tang, H., Wang, X., Chiquet, J., Belcram, H., Tong, C., Samans, B., Corréa, M., Da Silva, C., Just, J., Falentin, C., Koh, C. S., Le Clainche, I., Bernard, M., Bento, P., Noel, B., Labadie, K. & 62 others, Alberti, A., Charles, M., Arnaud, D., Guo, H., Daviaud, C., Alamery, S., Jabbari, K., Zhao, M., Edger, P. P., Chelaifa, H., Tack, D., Lassalle, G., Mestiri, I., Schnel, N., Le Paslier, M. C., Fan, G., Renault, V., Bayer, P. E., Golicz, A. A., Manoli, S., Lee, T. H., Thi, V. H. D., Chalabi, S., Hu, Q., Fan, C., Tollenaere, R., Lu, Y., Battail, C., Shen, J., Sidebottom, C. H. D., Wang, X., Canaguier, A., Chauveau, A., Bérard, A., Deniot, G., Guan, M., Liu, Z., Sun, F., Lim, Y. P., Lyons, E., Town, C. D., Bancroft, I., Wang, X., Meng, J., Ma, J., Pires, J. C., King, G. J., Brunel, D., Delourme, R., Renard, M., Aury, J. M., Adams, K. L., Batley, J., Snowdon, R. J., Tost, J., Edwards, D., Zhou, Y., Hua, W., Sharpe, A. G., Paterson, A. H., Guan, C. & Wincker, P., 22 Aug 2014

    Article in Science

  30. Insulin protects pancreatic acinar cells from palmitoleic acid-induced cellular injury

    Samad, A., James, A., Wong, J., Mankad, P., Whitehouse, J., Patel, W., Alves-Simoes, M., Siriwardena, A. K. & Bruce, J. I. E., 22 Aug 2014

    Article in The Journal of biological chemistry

  31. Genome-wide investigation of genetic changes during modern breeding of Brassica napus

    Wang, N., Li, F., Chen, B., Xu, K., Yan, G., Qiao, J., Li, J., Gao, G., Bancroft, I., Meng, J., King, G. J. & Wu, X., 20 Aug 2014

    Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik

  32. Genome-Wide Association Study Dissects the Genetic Architecture of Seed Weight and Seed Quality in Rapeseed (Brassica napus L.)

    Li, F., Chen, B., Xu, K., Wu, J., Song, W., Bancroft, I., Harper, A. L., Trick, M., Liu, S., Gao, G., Wang, N., Yan, G., Qiao, J., Li, J., Li, H., Xiao, X., Zhang, T. & Wu, X., 1 Aug 2014

    Article in DNA Research

  33. Correlative and integrated light and electron microscopy of in-resin GFP fluorescence, used to localise diacylglycerol in mammalian cells

    Peddie, C. J., Blight, K., Wilson, E., Melia, C., Marrison, J., Carzaniga, R., Domart, M-C., O'Toole, P., Larijani, B. & Collinson, L. M., Aug 2014

    Article in Ultramicroscopy

  34. New antigens for a multicomponent blood-stage malaria vaccine

    Osier, F. H., Mackinnon, M. J., Crosnier, C., Fegan, G., Kamuyu, G., Wanaguru, M., Ogada, E., McDade, B., Rayner, J. C., Wright, G. J. & Marsh, K., 30 Jul 2014

    Article in Science Translational Medicine

  35. New Applications for Phage Integrases

    Fogg, P. C. M., Colloms, S., Rosser, S., Stark, M. & Smith, M. C. M., 29 Jul 2014

    Article in Journal of Molecular Biology

  36. Genome and metabolic network of "Candidatus Phaeomarinobacter ectocarpi" Ec32, a new candidate genus of Alphaproteobacteria frequently associated with brown algae

    Dittami, S. M., Barbeyron, T., Boyen, C., Cambefort, J., Collet, G., Delage, L., Gobet, A., Groisillier, A., Leblanc, C., Michel, G., Scornet, D., Siegel, A., Tapia, J. E. & Tonon, T., 25 Jul 2014

    Article in Frontiers in genetics

  37. EGFR as a potential therapeutic target for a subset of muscle-invasive bladder cancers presenting a basal-like phenotype

    Rebouissou, S., Bernard-Pierrot, I., de Reyniès, A., Lepage, M-L., Krucker, C., Chapeaublanc, E., Hérault, A., Kamoun, A., Caillault, A., Letouzé, E., Elarouci, N., Neuzillet, Y., Denoux, Y., Molinié, V., Vordos, D., Laplanche, A., Maillé, P., Soyeux, P., Ofualuka, K., Reyal, F. & 8 others, Biton, A., Sibony, M., Paoletti, X., Southgate, J., Benhamou, S., Lebret, T., Allory, Y. & Radvanyi, F., 9 Jul 2014

    Article in Science Translational Medicine

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