Search research publications and outputs

  1. Review article › Research › Peer-reviewed
  2. Article › Research
  3. Knockout tissue models - targeted gene disruption in three dimensions

    Carstairs, A., Marshall, J. & Genever, P., Jun 2014, The Biochemist, 36, 3, p. 14-18.

    Research output: Contribution to specialist publicationArticle

  4. Conference contribution › Research
  5. Automated enzyme classification by formal concept analysis

    Coste, F., Garet, G., Groisillier, A., Nicolas, J. & Tonon, T., 1 Jan 2014, Formal Concept Analysis - 12th International Conference, ICFCA 2014, Proceedings. Springer-Verlag, p. 235-250 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8478 LNAI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  6. Novel Approaches to the Visualization and Quantification of Biological Simulations by Emulating Experimental Techniques

    Butler, J. A., Alden, K. J., Viega-Fernandes, H., Timmis, J. & Coles, M. C., 2014, Artificial Life 14: Proceedings of the Fourteenth International Conference on the Synthesis and Simulation of Living Systems. Sayama, H., Rieffel, J., Risi, S., Doursat, R. & Lipson, H. (eds.). MIT Press, p. 614-621 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  7. The Pi Swarm: A low-cost platform for swarm robotics research and education

    Hilder, J. A., Naylor, R. F., Rizihs, A., Franks, D. W. & Timmis, J., 2014, LNCS. Springer, Vol. 8717. p. 151-162

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  8. Chapter › Research
  9. Ancient biomolecules from archaeobotanical remains

    Wales, N., Andersen, K. & Cappellini, E., 1 Jan 2014, Method and Theory in Paleoethnobotany. University of Colorado Press, p. 293-313 21 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  10. Bladder tissue regeneration

    Wezel, F. & Southgate, J., 1 Jan 2014, Tissue Engineering Using Ceramics and Polymers. Second ed. Elsevier Inc., p. 439-467 29 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  11. Cloning of Recombinant Monoclonal Antibodies from Hybridomas in a Single Mammalian Expression Plasmid

    Müller-Sienerth, N., Crosnier, C., Wright, G. J. & Staudt, N., 2014, Monoclonal Antibodies. Ossipow, V. & Fischer, N. (eds.). Totowa, NJ: Humana Press, Vol. 1131. p. 229-240 12 p. (Methods in molecular biology).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  12. Concentrations and effects of air pollutants on vegetation in South-East Asia

    Emberson, L. D., Morris, J., Bueker, P., Harmens, H. & Mills, G., 2014, Air Pollution: Deposition to and impacts on vegetation in (South-)East Europe, Caucasus, Central Asia (EECCA/SEE) and South-East Asia. Mills, G. & Harmens, H. (eds.). Centre for Ecology and Hydrology, Bangor, UK: ICP Vegetation, p. 25-44 20 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  13. Gene Mining for Environmental Studies and Applications: Examples from Marine Organisms

    Dittami, S. M. & Tonon, T., 9 Jun 2014, Outstanding Marine Molecules: Chemistry, Biology, Analysis. Wiley, p. 435-456 22 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  14. Protocols for the Isolation and Analysis of Lipopeptides and Bioemulsifiers

    Smyth, T. J., Rudden, M. M., Tsaousi, K., Marchant, R. & Banat, I. M., 4 Dec 2014, Protocols for the Isolation and Analysis of Lipopeptides and Bioemulsifiers. p. 3-28 26 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  15. Book › Research
  16. Subcellular Fractionation: a laboratory manual

    Pryor, P. (ed.), 1 Nov 2014, Cold Spring Harbour Laboratory Press. 247 p. (Laboratory Manual)

    Research output: Book/ReportBook

  17. Editorial › Research › Peer-reviewed
  18. Evolutionary explosion

    Thomas, C. D. & Pearce, F., 11 Jan 2014

    Editorial in New Scientist

  19. Comment/debate › Research › Peer-reviewed
  20. Article › Research › Peer-reviewed
  21. Burkholderia sp. Induces Functional Nodules on the South African Invasive Legume Dipogon lignosus (Phaseoleae) in New Zealand Soils

    Liu, W. Y. Y., Ridgway, H. J., James, T. K., James, E. K., Chen, W-M., Sprent, J. I., Young, P. W. & Andrews, M., Oct 2014

    Article in Microbial Ecology

  22. A H+-ATPase That Energizes Nutrient Uptake during Mycorrhizal Symbioses in Rice and Medicago truncatula

    Wang, E., Yu, N., Bano, S. A., Liu, C., Miller, A. J., Cousins, D., Zhang, X., Ratet, P., Tadege, M., Mysore, K. S., Downie, J. A., Murray, J. D., Oldroyd, G. E. D. & Schultze, M., 29 Apr 2014

    Article in The Plant Cell

  23. A Nonsense Mutation in Mouse Tardbp Affects TDP43 Alternative Splicing Activity and Causes Limb-Clasping and Body Tone Defects

    Ricketts, T., McGoldrick, P., Fratta, P., de Oliveira, H. M., Kent, R., Phatak, V., Brandner, S., Blanco, G., Greensmith, L., Acevedo-Arozena, A. & Fisher, E. M. C., 21 Jan 2014

    Article in PLoS ONE

  24. A novel activating, germline JAK2 mutation, JAK2R564Q, causes familial essential thrombocytosis

    Etheridge, S. L., Cosgrove, M. E., Sangkhae, V., Corbo, L. M., Roh, M. E., Seeliger, M. A., Chan, E. L. & Hitchcock, I. S., 13 Feb 2014

    Article in Blood

  25. A zebrafish compound screen reveals modulation of neutrophil reverse migration as an anti-inflammatory mechanism

    Robertson, A. L., Holmes, G. R., Bojarczuk, A. N., Burgon, J., Loynes, C. A., Chimen, M., Sawtell, A. K., Hamza, B., Willson, J., Walmsley, S. R., Anderson, S. R., Coles, M. C., Farrow, S. N., Solari, R., Jones, S., Prince, L. R., Irimia, D., Rainger, G. E., Kadirkamanathan, V., Whyte, M. K. B. & 1 others, Renshaw, S. A., 26 Feb 2014

    Article in Science Translational Medicine

  26. A zoospore inoculation method with Phytophthora Sojae to assess the prophylactic role of silicon on soybean cultivars

    Guérin, V., Lebreton, A., Cogliati, E. E., Hartley, S. E., Belzile, F., Menzies, J. G. & Bélanger, R. R., Dec 2014

    Article in Plant Disease

  27. Abnormal visual gain control in a Parkinson's disease model

    Afsari, F., Christensen, K., Smith, G., Hentzer, M., Nippe, O., Elliott, C. & Wade, A., 1 Sep 2014

    Article in Human Molecular Genetics

  28. Actin Is Required for IFT Regulation in Chlamydomonas reinhardtii

    Avasthi, P., Onishi, M., Karpiak, J., Yamamoto, R., Mackinder, L., Jonikas, MC., Sale, WS., Shoichet, B., Pringle, JR. & Marshall, WF., 8 Sep 2014

    Article in Current Biology

  29. Advancing climate compatible development: Lessons from southern Africa

    Stringer, L. C., Dougill, A. J., Dyer, J. C., Vincent, K., Fritzsche, F., Leventon, J., Falcão, M. P., Manyakaidze, P., Syampungani, S., Powell, P. & Kalaba, G., 1 Apr 2014

    Article in Regional Environmental Change

  30. Allele-specific knockdown of ALS-associated mutant TDP-43 in neural stem cells derived from induced pluripotent stem cells

    Nishimura, A. L., Shum, C., Scotter, E. L., Abdelgany, A., Sardone, V., Wright, J., Lee, Y., Chen, H-J., Bilican, B., Carrasco, M., Maniatis, T., Chandran, S., Rogelj, B., Gallo, J-M. & Shaw, C. E., 20 Mar 2014

    Article in PLoS ONE

  31. Altered expression of an RBP-associated arginine methyltransferase 7 in Leishmania major affects parasite infection

    Ferreira, T. R., Ferreira, E. V. C. A., Defina, T. P. A., Walrad, P. B., Papadopoulou, B. & Cruz, A. K., Dec 2014

    Article in Molecular Microbiology

  32. Alternative acetate production pathways in chlamydomonas reinhardtii during dark anoxia and the dominant role of chloroplasts in fermentative acetate production

    Yang, W., Catalanotti, C., D’adamo, S., Wittkopp, T. M., Ingram-Smith, C. J., Mackinder, L., Miller, T. E., Heuberger, A. L., Peers, G., Smith, K. S., Jonikas, M. C., Grossman, A. R. & Posewitz, M. C., 2014

    Article in The Plant Cell

  33. An Efficient Method for the In Vitro Production of Azol(in)e-Based Cyclic Peptides

    Houssen, W. E., Bent, A. F., McEwan, A. R., Pieiller, N., Tabudravu, J., Koehnke, J., Mann, G., Adaba, R. I., Thomas, L., Hawas, U. W., Liu, H., Schwarz-Linek, U., Smith, M. C. M., Naismith, J. H. & Jaspars, M., 21 Oct 2014

    Article in Angewandte Chemie International Edition

  34. An essential role for LPA signalling in telencephalon development

    Geach, T. J., Faas, L., Devader, C., Gonzalez-Cordero, A., Brunsdon, H., tabler, J., Isaacs, H. V. & Dale, L., Feb 2014

    Article in Development

  35. Area fluxes of carbon dioxide, methane, and carbon monoxide derived from airborne measurements around Greater London: A case study during summer 2012

    O’Shea, S. J., Allen, G., Fleming, Z. L., Bauguitte, S. J. B., Percival, C. J., Gallagher, M. W., Lee, J., Helfter, C. & Nemitz, E., 14 May 2014

    Article in Journal of Geophysical Research

  36. Atmospheric composition and thermodynamic retrievals from the ARIES airborne TIR-FTS system - Part 2: Validation and results from aircraft campaigns

    Allen, G., Illingworth, S. M., O'Shea, S. J., Newman, S., Vance, A., Bauguitte, S. J. B., Marenco, F., Kent, J., Bower, K., Gallagher, M. W., Muller, J., Percival, C. J., Harlow, C., Lee, J. & Taylor, J. P., 12 Dec 2014

    Article in Atmospheric Measurement Techniques

  37. Biochemistry: Unlocking ancient protein palimpsests

    Cappellini, E., Collins, M. J. & Gilbert, M. T. P., 21 Mar 2014

    Article in Science

  38. Biochemistry of high stearic sunflower, a new source of saturated fats

    Salas, JJ., Martinez-Force, E., Harwood, J. L., Venegas-Caleron, M., Aznar-Moreno, JA., Moreno-Perez, AJ., Ruiz-Lopez, N., Serrano-Vega, MJ., Graham, I. A., Mullen, RT. & Garces, R., Jul 2014

    Article in Progress in Lipid Research

  39. Cellular origins of auditory event-related potential deficits in Rett syndrome

    Goffin, D., Brodkin, E. S., Blendy, J. A., Siegel, S. J. & Zhou, Z., 28 Apr 2014

    Article in Nature neuroscience

  40. Chondrus crispus - A present and historical model organism for red seaweeds

    Collén, J., Cornish, M. L., Craigie, J., Ficko-Blean, E., Hervé, C., Krueger-Hadfield, S. A., Leblanc, C., Michel, G., Potin, P., Tonon, T. & Boyen, C., 2014

    Article in Advances in Botanical Research

  41. Class IIa histone deacetylases are conserved regulators of circadian function

    Fogg, P. C. M., O'Neill, J. S., Dobrzycki, T., Calvert, S., Lord, E. C., McIntosh, R. L. L., Elliott, C. J. H., Sweeney, S. T., Hastings, M. H. & Chawla, S., 5 Dec 2014

    Article in The Journal of biological chemistry

  42. Commensal-pathogen interactions in the intestinal tract: lactobacilli promote infection with, and are promoted by, helminth parasites

    Reynolds, L. A., Smith, K. A., Filbey, K. J., Harcus, Y., Hewitson, J. P., Redpath, S. A., Valdez, Y., Yebra, M. J., Finlay, B. B. & Maizels, R. M., 1 Jul 2014

    Article in Gut Microbes

  43. Complete genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species

    Moulin, L., Klonowska, A., Bournaud, C., Booth, K., Vriezen, J., Melkonian, R., James, E. K., Young, J., Bena, G., Hauser, L., Land, M., Kyrpides, N., Bruce, D., Chain, P., Copeland, A., Pitluck, S., Woyke, T., Lizotte-Waniewski, M., Bristow, J. & Riley, M., 2014

    Article in Standards in Genomic Sciences

  44. Correlative and integrated light and electron microscopy of in-resin GFP fluorescence, used to localise diacylglycerol in mammalian cells

    Peddie, C. J., Blight, K., Wilson, E., Melia, C., Marrison, J., Carzaniga, R., Domart, M-C., O'Toole, P., Larijani, B. & Collinson, L. M., Aug 2014

    Article in Ultramicroscopy

  45. Cytochrome P450s from Cynara cardunculus L. CYP71AV9 and CYP71BL5, catalyze distinct hydroxylations in the sesquiterpene lactone biosynthetic pathway

    Eljounaidi, K., Cankar, K., Comino, C., Moglia, A., Hehn, A., Bourgaud, F., Bouwmeester, H., menin, B., Lanteri, S. & Beekwilder, J., 13 Mar 2014

    Article in Plant science

  46. DARC shuttles inflammatory chemokines across the blood-brain barrier during autoimmune central nervous system inflammation

    Minten, C., Alt, C., Gentner, M., Frei, E., Deutsch, U., Lyck, R., Schaeren-Wiemers, N., Rot, A. & Engelhardt, B., 1 May 2014

    Article in Brain : a journal of neurology

  47. Differential roles of the ubiquitin proteasome system and autophagy in the clearance of soluble and aggregated TDP-43 species

    Scotter, E. L., Vance, C., Nishimura, A. L., Lee, Y., Chen, H-J., Urwin, H., Sardone, V., Mitchell, J. C., Rogelj, B., Rubinsztein, D. C. & Shaw, C. E., 15 Mar 2014

    Article in Journal of Cell Science

  48. Disease Epidemiology in Arthropods Is Altered by the Presence of Nonprotective Symbionts

    Ryder, J. J., Hoare, M-J., Pastok, D., Bottery, M. J., Boots, M., Fenton, A., Atkinson, D., Knell, R. J. & Hurst, G. D. D., Mar 2014

    Article in The American Naturalist

  49. Dissecting functions of the conserved oligomeric Golgi tethering complex using a cell free assay

    Cottam, N. P., Wilson, K. M., Ng, B. G., Körner, C., Freeze, H. H. & Ungar, D., 4 Jan 2014

    Article in Traffic

  50. Distinct stromal cell factor combinations can separately control hematopoietic stem cell survival, proliferation, and self-renewal

    Wohrer, S., Knapp, DJHF., Copley, MR., Benz, C., Kent, DG., Rowe, K., Babovic, S., Mader, H., Oostendorp, RAJ. & Eaves, CJ., 26 Jun 2014

    Article in Cell reports

  51. Downscaling reveals diverse effects of anthropogenic climate warming on the potential for local environments to support malaria transmission

    Paaijmans, K. P., Blanford, J. I., Crane, R. G., Mann, M. E., Ning, L., Schreiber, K. V. & Thomas, M. B., 19 Jun 2014

    Article in Climatic change

  52. Drug Discovery for Human African Trypanosomiasis: Identification of Novel Scaffolds by the Newly Developed HTS/Sybr Green Assay for Trypanosoma brucei.

    Correia Faria, J. R., Borsoi Moraes, C., Song, R., Pascoalino, B. S., Lee, N., Siqueira-Neto, J. L., M Cruz, D. J., Parkinson, T., Loset, J-R., Cordeiro-da-Silva, A. & Freitas-Junior, L. H., 23 Nov 2014

    Article in Journal of biomolecular screening

  53. EGFR as a potential therapeutic target for a subset of muscle-invasive bladder cancers presenting a basal-like phenotype

    Rebouissou, S., Bernard-Pierrot, I., de Reyniès, A., Lepage, M-L., Krucker, C., Chapeaublanc, E., Hérault, A., Kamoun, A., Caillault, A., Letouzé, E., Elarouci, N., Neuzillet, Y., Denoux, Y., Molinié, V., Vordos, D., Laplanche, A., Maillé, P., Soyeux, P., Ofualuka, K., Reyal, F. & 8 others, Biton, A., Sibony, M., Paoletti, X., Southgate, J., Benhamou, S., Lebret, T., Allory, Y. & Radvanyi, F., 9 Jul 2014

    Article in Science Translational Medicine

  54. Early allopolyploid evolution in the post-neolithic Brassica napus oilseed genome

    Chalhoub, B., Denoeud, F., Liu, S., Parkin, I. A. P., Tang, H., Wang, X., Chiquet, J., Belcram, H., Tong, C., Samans, B., Corréa, M., Da Silva, C., Just, J., Falentin, C., Koh, C. S., Le Clainche, I., Bernard, M., Bento, P., Noel, B., Labadie, K. & 62 others, Alberti, A., Charles, M., Arnaud, D., Guo, H., Daviaud, C., Alamery, S., Jabbari, K., Zhao, M., Edger, P. P., Chelaifa, H., Tack, D., Lassalle, G., Mestiri, I., Schnel, N., Le Paslier, M. C., Fan, G., Renault, V., Bayer, P. E., Golicz, A. A., Manoli, S., Lee, T. H., Thi, V. H. D., Chalabi, S., Hu, Q., Fan, C., Tollenaere, R., Lu, Y., Battail, C., Shen, J., Sidebottom, C. H. D., Wang, X., Canaguier, A., Chauveau, A., Bérard, A., Deniot, G., Guan, M., Liu, Z., Sun, F., Lim, Y. P., Lyons, E., Town, C. D., Bancroft, I., Wang, X., Meng, J., Ma, J., Pires, J. C., King, G. J., Brunel, D., Delourme, R., Renard, M., Aury, J. M., Adams, K. L., Batley, J., Snowdon, R. J., Tost, J., Edwards, D., Zhou, Y., Hua, W., Sharpe, A. G., Paterson, A. H., Guan, C. & Wincker, P., 22 Aug 2014

    Article in Science

  55. Effect of a mutagenized acyl‐ACP thioesterase FATA allele from sunflower with improved activity in tobacco leaves and Arabidopsis seeds.

    Moreno-Pérez, A. J., Venegas‐Calerón, M., Vaistij, F. E., Salas, J. J., Larson, T. R., Garcés, R., Graham, I. A. & Martínez-Force, E., 2014

    Article in Planta

  56. Effects of Elevated CO2 on Litter Chemistry and Subsequent Invertebrate Detritivore Feeding Responses

    Dray, M. W., Crowther, T. W., Thomas, S. M., A'Bear, A. D., Godbold, D. L., Ormerod, S. J., Hartley, S. E. & Jones, T. H., 22 Jan 2014

    Article in PLoS ONE

  57. Evaluating the composition and processing potential of novel sources of Brazilian biomass for sustainable biorenewables production

    Lima, M. A., Gomez, L. D., Steele-King, C. G., Simister, R., Bernardinelli, O. D., Carvalho, M. A., Rezende, C. A., Labate, C. A., Deazevedo, E. R., McQueen-Mason, S. J., Polikarpov, I. & McQueen Mason, S. J., 18 Jan 2014

    Article in Biotechnology for biofuels

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