Search research publications and outputs

  1. Burkholderia sp. Induces Functional Nodules on the South African Invasive Legume Dipogon lignosus (Phaseoleae) in New Zealand Soils

    Liu, W. Y. Y., Ridgway, H. J., James, T. K., James, E. K., Chen, W-M., Sprent, J. I., Young, P. W. & Andrews, M., Oct 2014

    Article in Microbial Ecology

  2. A H+-ATPase That Energizes Nutrient Uptake during Mycorrhizal Symbioses in Rice and Medicago truncatula

    Wang, E., Yu, N., Bano, S. A., Liu, C., Miller, A. J., Cousins, D., Zhang, X., Ratet, P., Tadege, M., Mysore, K. S., Downie, J. A., Murray, J. D., Oldroyd, G. E. D. & Schultze, M., Apr 2014

    Article in The Plant Cell

  3. A Nonsense Mutation in Mouse Tardbp Affects TDP43 Alternative Splicing Activity and Causes Limb-Clasping and Body Tone Defects

    Ricketts, T., McGoldrick, P., Fratta, P., de Oliveira, H. M., Kent, R., Phatak, V., Brandner, S., Blanco, G., Greensmith, L., Acevedo-Arozena, A. & Fisher, E. M. C., 21 Jan 2014

    Article in PLoS ONE

  4. A novel activating, germline JAK2 mutation, JAK2R564Q, causes familial essential thrombocytosis

    Etheridge, S. L., Cosgrove, M. E., Sangkhae, V., Corbo, L. M., Roh, M. E., Seeliger, M. A., Chan, E. L. & Hitchcock, I. S., 13 Feb 2014

    Article in Blood

  5. A zebrafish compound screen reveals modulation of neutrophil reverse migration as an anti-inflammatory mechanism

    Robertson, A. L., Holmes, G. R., Bojarczuk, A. N., Burgon, J., Loynes, C. A., Chimen, M., Sawtell, A. K., Hamza, B., Willson, J., Walmsley, S. R., Anderson, S. R., Coles, M. C., Farrow, S. N., Solari, R., Jones, S., Prince, L. R., Irimia, D., Rainger, G. E., Kadirkamanathan, V., Whyte, M. K. B. & 1 others, Renshaw, S. A., 26 Feb 2014

    Article in Science Translational Medicine

  6. A zoospore inoculation method with Phytophthora Sojae to assess the prophylactic role of silicon on soybean cultivars

    Guérin, V., Lebreton, A., Cogliati, E. E., Hartley, S. E., Belzile, F., Menzies, J. G. & Bélanger, R. R., Dec 2014

    Article in Plant Disease

  7. Actin Is Required for IFT Regulation in Chlamydomonas reinhardtii

    Avasthi, P., Onishi, M., Karpiak, J., Yamamoto, R., Mackinder, L., Jonikas, MC., Sale, WS., Shoichet, B., Pringle, JR. & Marshall, WF., 8 Sep 2014

    Article in Current Biology

  8. Allele-specific knockdown of ALS-associated mutant TDP-43 in neural stem cells derived from induced pluripotent stem cells

    Nishimura, A. L., Shum, C., Scotter, E. L., Abdelgany, A., Sardone, V., Wright, J., Lee, Y., Chen, H-J., Bilican, B., Carrasco, M., Maniatis, T., Chandran, S., Rogelj, B., Gallo, J-M. & Shaw, C. E., 20 Mar 2014

    Article in PLoS ONE

  9. Altered expression of an RBP-associated arginine methyltransferase 7 in Leishmania major affects parasite infection

    Ferreira, T. R., Ferreira, E. V. C. A., Defina, T. P. A., Walrad, P. B., Papadopoulou, B. & Cruz, A. K., Dec 2014

    Article in Molecular Microbiology

  10. Alternative acetate production pathways in chlamydomonas reinhardtii during dark anoxia and the dominant role of chloroplasts in fermentative acetate production

    Yang, W., Catalanotti, C., D’adamo, S., Wittkopp, T. M., Ingram-Smith, C. J., Mackinder, L., Miller, T. E., Heuberger, A. L., Peers, G., Smith, K. S., Jonikas, M. C., Grossman, A. R. & Posewitz, M. C., 2014

    Article in The Plant Cell

  11. An Efficient Method for the In Vitro Production of Azol(in)e-Based Cyclic Peptides

    Houssen, W. E., Bent, A. F., McEwan, A. R., Pieiller, N., Tabudravu, J., Koehnke, J., Mann, G., Adaba, R. I., Thomas, L., Hawas, U. W., Liu, H., Schwarz-Linek, U., Smith, M. C. M., Naismith, J. H. & Jaspars, M., 21 Oct 2014

    Article in Angewandte Chemie International Edition

  12. Ancient biomolecules from archaeobotanical remains

    Wales, N., Andersen, K. & Cappellini, E., 1 Jan 2014, Method and Theory in Paleoethnobotany. University of Colorado Press, p. 293-313 21 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  13. Automated enzyme classification by formal concept analysis

    Coste, F., Garet, G., Groisillier, A., Nicolas, J. & Tonon, T., 1 Jan 2014, Formal Concept Analysis - 12th International Conference, ICFCA 2014, Proceedings. Springer-Verlag, p. 235-250 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8478 LNAI).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  14. Biochemistry: Unlocking ancient protein palimpsests

    Cappellini, E., Collins, M. J. & Gilbert, M. T. P., 21 Mar 2014

    Article in Science

  15. Biochemistry of high stearic sunflower, a new source of saturated fats

    Salas, JJ., Martinez-Force, E., Harwood, J. L., Venegas-Caleron, M., Aznar-Moreno, JA., Moreno-Perez, AJ., Ruiz-Lopez, N., Serrano-Vega, MJ., Graham, I. A., Mullen, RT. & Garces, R., Jul 2014

    Article in Progress in Lipid Research

  16. Cellular origins of auditory event-related potential deficits in Rett syndrome

    Goffin, D., Brodkin, E. S., Blendy, J. A., Siegel, S. J. & Zhou, Z., 28 Apr 2014

    Article in Nature neuroscience

  17. Chondrus crispus - A present and historical model organism for red seaweeds

    Collén, J., Cornish, M. L., Craigie, J., Ficko-Blean, E., Hervé, C., Krueger-Hadfield, S. A., Leblanc, C., Michel, G., Potin, P., Tonon, T. & Boyen, C., 2014

    Article in Advances in Botanical Research

  18. Class IIa histone deacetylases are conserved regulators of circadian function

    Fogg, P. C. M., O'Neill, J. S., Dobrzycki, T., Calvert, S., Lord, E. C., McIntosh, R. L. L., Elliott, C. J. H., Sweeney, S. T., Hastings, M. H. & Chawla, S., 5 Dec 2014

    Article in The Journal of biological chemistry

  19. Cloning of Recombinant Monoclonal Antibodies from Hybridomas in a Single Mammalian Expression Plasmid

    Müller-Sienerth, N., Crosnier, C., Wright, G. J. & Staudt, N., 2014, Monoclonal Antibodies. Ossipow, V. & Fischer, N. (eds.). Totowa, NJ: Humana Press, Vol. 1131. p. 229-240 12 p. (Methods in molecular biology).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  20. Commensal-pathogen interactions in the intestinal tract: lactobacilli promote infection with, and are promoted by, helminth parasites

    Reynolds, L. A., Smith, K. A., Filbey, K. J., Harcus, Y., Hewitson, J. P., Redpath, S. A., Valdez, Y., Yebra, M. J., Finlay, B. B. & Maizels, R. M., 1 Jul 2014

    Article in Gut Microbes

  21. Complete genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species

    Moulin, L., Klonowska, A., Bournaud, C., Booth, K., Vriezen, J., Melkonian, R., James, E. K., Young, J., Bena, G., Hauser, L., Land, M., Kyrpides, N., Bruce, D., Chain, P., Copeland, A., Pitluck, S., Woyke, T., Lizotte-Waniewski, M., Bristow, J. & Riley, M., 2014

    Article in Standards in Genomic Sciences

  22. Concentrations and effects of air pollutants on vegetation in South-East Asia

    Emberson, L. D., Morris, J., Bueker, P., Harmens, H. & Mills, G., 2014, Air Pollution: Deposition to and impacts on vegetation in (South-)East Europe, Caucasus, Central Asia (EECCA/SEE) and South-East Asia. Mills, G. & Harmens, H. (eds.). Centre for Ecology and Hydrology, Bangor, UK: ICP Vegetation, p. 25-44 20 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  23. DARC shuttles inflammatory chemokines across the blood-brain barrier during autoimmune central nervous system inflammation

    Minten, C., Alt, C., Gentner, M., Frei, E., Deutsch, U., Lyck, R., Schaeren-Wiemers, N., Rot, A. & Engelhardt, B., 1 May 2014

    Article in Brain : a journal of neurology

  24. Differential roles of the ubiquitin proteasome system and autophagy in the clearance of soluble and aggregated TDP-43 species

    Scotter, E. L., Vance, C., Nishimura, A. L., Lee, Y., Chen, H-J., Urwin, H., Sardone, V., Mitchell, J. C., Rogelj, B., Rubinsztein, D. C. & Shaw, C. E., 15 Mar 2014

    Article in Journal of Cell Science

  25. Disease Epidemiology in Arthropods Is Altered by the Presence of Nonprotective Symbionts

    Ryder, J. J., Hoare, M-J., Pastok, D., Bottery, M. J., Boots, M., Fenton, A., Atkinson, D., Knell, R. J. & Hurst, G. D. D., Mar 2014

    Article in The American Naturalist

  26. Dissecting functions of the conserved oligomeric Golgi tethering complex using a cell free assay

    Cottam, N. P., Wilson, K. M., Ng, B. G., Körner, C., Freeze, H. H. & Ungar, D., 4 Jan 2014

    Article in Traffic

  27. Distinct stromal cell factor combinations can separately control hematopoietic stem cell survival, proliferation, and self-renewal

    Wohrer, S., Knapp, DJHF., Copley, MR., Benz, C., Kent, DG., Rowe, K., Babovic, S., Mader, H., Oostendorp, RAJ. & Eaves, CJ., 26 Jun 2014

    Article in Cell reports

  28. Downscaling reveals diverse effects of anthropogenic climate warming on the potential for local environments to support malaria transmission

    Paaijmans, K. P., Blanford, J. I., Crane, R. G., Mann, M. E., Ning, L., Schreiber, K. V. & Thomas, M. B., 19 Jun 2014

    Article in Climatic change

  29. EGFR as a potential therapeutic target for a subset of muscle-invasive bladder cancers presenting a basal-like phenotype

    Rebouissou, S., Bernard-Pierrot, I., de Reyniès, A., Lepage, M-L., Krucker, C., Chapeaublanc, E., Hérault, A., Kamoun, A., Caillault, A., Letouzé, E., Elarouci, N., Neuzillet, Y., Denoux, Y., Molinié, V., Vordos, D., Laplanche, A., Maillé, P., Soyeux, P., Ofualuka, K., Reyal, F. & 8 others, Biton, A., Sibony, M., Paoletti, X., Southgate, J., Benhamou, S., Lebret, T., Allory, Y. & Radvanyi, F., 9 Jul 2014

    Article in Science Translational Medicine

  30. Early allopolyploid evolution in the post-neolithic Brassica napus oilseed genome

    Chalhoub, B., Denoeud, F., Liu, S., Parkin, I. A. P., Tang, H., Wang, X., Chiquet, J., Belcram, H., Tong, C., Samans, B., Corréa, M., Da Silva, C., Just, J., Falentin, C., Koh, C. S., Le Clainche, I., Bernard, M., Bento, P., Noel, B., Labadie, K. & 62 others, Alberti, A., Charles, M., Arnaud, D., Guo, H., Daviaud, C., Alamery, S., Jabbari, K., Zhao, M., Edger, P. P., Chelaifa, H., Tack, D., Lassalle, G., Mestiri, I., Schnel, N., Le Paslier, M. C., Fan, G., Renault, V., Bayer, P. E., Golicz, A. A., Manoli, S., Lee, T. H., Thi, V. H. D., Chalabi, S., Hu, Q., Fan, C., Tollenaere, R., Lu, Y., Battail, C., Shen, J., Sidebottom, C. H. D., Wang, X., Canaguier, A., Chauveau, A., Bérard, A., Deniot, G., Guan, M., Liu, Z., Sun, F., Lim, Y. P., Lyons, E., Town, C. D., Bancroft, I., Wang, X., Meng, J., Ma, J., Pires, J. C., King, G. J., Brunel, D., Delourme, R., Renard, M., Aury, J. M., Adams, K. L., Batley, J., Snowdon, R. J., Tost, J., Edwards, D., Zhou, Y., Hua, W., Sharpe, A. G., Paterson, A. H., Guan, C. & Wincker, P., 22 Aug 2014

    Article in Science

  31. Effect of a mutagenized acyl‐ACP thioesterase FATA allele from sunflower with improved activity in tobacco leaves and Arabidopsis seeds.

    Moreno-Pérez, A. J., Venegas‐Calerón, M., Vaistij, F. E., Salas, J. J., Larson, T. R., Garcés, R., Graham, I. A. & Martínez-Force, E., 2014

    Article in Planta

  32. Effects of Elevated CO2 on Litter Chemistry and Subsequent Invertebrate Detritivore Feeding Responses

    Dray, M. W., Crowther, T. W., Thomas, S. M., A'Bear, A. D., Godbold, D. L., Ormerod, S. J., Hartley, S. E. & Jones, T. H., 22 Jan 2014

    Article in PLoS ONE

  33. Evaluating the composition and processing potential of novel sources of Brazilian biomass for sustainable biorenewables production

    Lima, M. A., Gomez, L. D., Steele-King, C. G., Simister, R., Bernardinelli, O. D., Carvalho, M. A., Rezende, C. A., Labate, C. A., Deazevedo, E. R., McQueen-Mason, S. J., Polikarpov, I. & McQueen Mason, S. J., 18 Jan 2014

    Article in Biotechnology for biofuels

  34. Evolutionary explosion

    Thomas, C. D. & Pearce, F., 11 Jan 2014

    Editorial in New Scientist

  35. Fate mapping reveals origin and dynamics of lymph node follicular dendritic cells

    Jarjour, M., Jorquera, A., Mondor, I., Wienert, S., Narang, P., Coles, M. C., Klauschen, F. & Bajénoff, M., 26 May 2014

    Article in Journal of Experimental Medicine

  36. Gene Mining for Environmental Studies and Applications: Examples from Marine Organisms

    Dittami, S. M. & Tonon, T., 9 Jun 2014, Outstanding Marine Molecules: Chemistry, Biology, Analysis. Wiley-Blackwell, p. 435-456 22 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  37. Genome and metabolic network of "Candidatus Phaeomarinobacter ectocarpi" Ec32, a new candidate genus of Alphaproteobacteria frequently associated with brown algae

    Dittami, S. M., Barbeyron, T., Boyen, C., Cambefort, J., Collet, G., Delage, L., Gobet, A., Groisillier, A., Leblanc, C., Michel, G., Scornet, D., Siegel, A., Tapia, J. E. & Tonon, T., 25 Jul 2014

    Article in Frontiers in genetics

  38. Genome sequencing of two Neorhizobium galegae strains reveals a noeT gene responsible for the unusual acetylation of the nodulation factors

    Österman, J., Marsh, J., Laine, P., Zeng, Z., Alatalo, E., Sullivan, J., Young, J. P. W., Thomas-Oates, J., Paulin, L. & Lindström, K., 19 Jun 2014

    Article in BMC Genomics

  39. Genome-Wide Association Study Dissects the Genetic Architecture of Seed Weight and Seed Quality in Rapeseed (Brassica napus L.)

    Li, F., Chen, B., Xu, K., Wu, J., Song, W., Bancroft, I., Harper, A. L., Trick, M., Liu, S., Gao, G., Wang, N., Yan, G., Qiao, J., Li, J., Li, H., Xiao, X., Zhang, T. & Wu, X., 1 Aug 2014

    Article in DNA Research

  40. Genome-wide investigation of genetic changes during modern breeding of Brassica napus

    Wang, N., Li, F., Chen, B., Xu, K., Yan, G., Qiao, J., Li, J., Gao, G., Bancroft, I., Meng, J., King, G. J. & Wu, X., 20 Aug 2014

    Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik

  41. Global profiling of co- and post-translationally N-myristoylated proteomes in human cells

    Thinon, E., Serwa, R. A., Broncel, M., Brannigan, J. A., Brassat, U., Wright, M. H., Heal, W. P., Wilkinson, A. J., Mann, D. J. & Tate, E. W., 26 Sep 2014

    Article in Nature Communications

  42. High efficiency proton beam generation through target thickness control in femtosecond laser-plasma interactions

    Green, J. S., Robinson, A. P. L., Booth, N., Carroll, D. C., Dance, R. J., Gray, R. J., MacLellan, D. A., McKenna, P., Murphy, C. D., Rusby, D. & Wilson, L., 26 May 2014

    Article in Applied Physics Letters

  43. High-resolution mapping of transcriptional dynamics across tissue development reveals a stable mRNA-tRNA interface

    Schmitt, B. M., Rudolph, K. L. M., Karagianni, P., Fonseca, N. A., White, R. J., Talianidis, I., Odom, D. T., Marioni, J. C. & Kutter, C., Nov 2014

    Article in Genome Research

  44. How the structure of the large subunit controls function in an oxygen-tolerant [NiFe]-hydrogenase

    Bowman, L., Flanagan, L., Fyfe, P. K., Parkin, A., Hunter, W. N. & Sargent, F., 15 Mar 2014

    Article in Biochemical journal

  45. Hybridization facilitates evolutionary rescue

    Stelkens, R. B., Brockhurst, M. A., Hurst, G. D. D. & Greig, D., Dec 2014

    Article in Evolutionary applications

  46. Identification of ELF3 as an early transcriptional regulator of human urothelium

    Böck, M., Hinley, J., Schmitt, C., Wahlicht, T., Kramer, S. & Southgate, J., 15 Feb 2014

    Article in Developmental Biology

  47. Increased resistance to biotrophic pathogens in the arabidopsis constitutive induced resistance 1 mutant is EDS1 and PAD4-dependent and modulated by environmental temperature

    Carstens, M., McCrindle, T. K., Adams, N., Diener, A., Guzha, D. T., Murray, S. L., Parker, J. E., Denby, K. J. & Ingle, R. A., 10 Oct 2014

    Article in PLoS ONE

  48. Independent Component Analysis Uncovers the Landscape of the Bladder Tumor Transcriptome and Reveals Insights into Luminal and Basal Subtypes

    Biton, A., Bernard-Pierrot, I., Lou, Y., Krucker, C., Chapeaublanc, E., Rubio-Pérez, C., López-Bigas, N., Kamoun, A., Neuzillet, Y., Gestraud, P., Grieco, L., Rebouissou, S., deReyniès, A., Benhamou, S., Lebret, T., Southgate, J., Barillot, E., Allory, Y., Zinovyev, A. & Radvanyi, F., 20 Nov 2014

    Article in Cell reports

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