Search research publications and outputs

  1. A new look at the LTR retrotransposon content of the chicken genome

    Mason, A. S., Fulton, J. E., Hocking, P. M. & Burt, D. W., 30 Aug 2016

    Article in BMC Genomics

  2. A repeat protein links Rubisco to form the eukaryotic carbon-concentrating organelle

    Mackinder, L. C. M., Meyer, M. T., Mettler-Altmann, T., Chen, V. K., Mitchell, M. C., Caspari, O., Rosenzweig, E. S. F., Pallesen, L., Reeves, G., Itakura, A., Roth, R., Sommer, F., Geimer, S., Mühlhaus, T., Schroda, M., Goodenough, U., Stitt, M., Griffiths, H. & Jonikas, M. C., 24 May 2016

    Article in Proceedings of the National Academy of Sciences of the United States of America

  3. Allosteric Regulation of Fibronectin/α5β1 Interaction by Fibronectin-Binding MSCRAMMs

    Liang, X., Garcia, B. L., Visai, L., Prabhakaran, S., Meenan, N. A. G., Potts, J. R., Humphries, M. J. & Höök, M., 19 Jul 2016

    Article in PLoS ONE

  4. An epigenetic reprogramming strategy to re-sensitize radioresistant prostate cancer cells

    Peitzsch, C., Cojoc, M., Hein, L., Kurth, I., Mӓbert, K., Trautmann, F., Klink, B., Schrock, E., Wirth, M. P., Krause, M., Stakhovsky, E. A., Telegeev, G. D., Novotny, V., Toma, M. I., Muders, M., Baretton, G. B., Frame, F. M., Maitland, N. J., Baumann, M. & Dubrovska, A., 1 May 2016

    Article in Cancer research

  5. Another Continental Vulture Crisis: Africa's Vultures Collapsing toward Extinction

    Ogada, D., Shaw, P., Beyers, R. L., Buij, R., Murn, C., Thiollay, J. M., Beale, C. M., Holdo, R. M., Pomeroy, D., Baker, N., Krüger, S. C., Botha, A., Virani, M. Z., Monadjem, A. & Sinclair, A. R. E., 26 Apr 2016

    Article in Conservation Letters

  6. Binding of Plasmodium falciparum Merozoite Surface Proteins DBLMSP and DBLMSP2 to Human Immunoglobulin M Is Conserved among Broadly Diverged Sequence Variants.

    Crosnier, C., Iqbal, Z., Knuepfer, E., Maciuca, S., Perrin, A. J., Kamuyu, G., Goulding, D., Bustamante, L. Y., Miles, A., Moore, S. C., Dougan, G., Holder, A. A., Kwiatkowski, D. P., Rayner, J. C., Pleass, R. J. & Wright, G. J., 1 Jul 2016

    Article in The Journal of biological chemistry

  7. Bone marrow-derived and resident liver macrophages display unique transcriptomic signatures but similar biological functions

    Beattie, L., Sawtell, A. K., Mann, J., Frame, T. C. M., Teal, B., de Labastida Rivera, F., Brown, N., Walwyn-Brown, K., Moore, J. W. J., MacDonald, A. J., Lim, E-K., Dalton, J. E., Engwerda, C. R., MacDonald, K. P. & Kaye, P., 1 Oct 2016

    Article in Journal of Hepatology

  8. Challenges in microbial ecology: building predictive understanding of community function and dynamics

    Chong, J. P. J., Widder, S., Allen, R. J., Pfeiffer, T., Curtis, T. P., Wiuf, C., Sloan, W. T., Cordero, O. X., Brown, S. P., Momeni, B., Shou, W., Kettle, H., Flint, H. J., Haas, A. F., Laroche, B., Kreft, J-U., Rainey, P. B., Freilich, S., Schuster, S., Milferstedt, K. & 11 others, van der Meer, J. R., Grosskopf, T., Huisman, J., Free, A., Picioreanu, C., Quince, C., Klapper, I., Labarthe, S., Smets, B. F., Wang, H. & Soyer, O. S., 29 Mar 2016

    Literature review in The ISME Journal

  9. Characterising rhamnolipid production in Burkholderia thailandensis E264, a non-pathogenic producer

    Funston, S. J., Tsaousi, K., Rudden, M., Smyth, T. J., Stevenson, P. S., Marchant, R. & Banat, I. M., Sep 2016

    Article in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

  10. Codon-Driven Translational Efficiency Is Stable across Diverse Mammalian Cell States

    Rudolph, K. L. M., Schmitt, B. M., Villar, D., White, R. J., Marioni, J. C., Kutter, C. & Odom, D. T., 11 May 2016

    Article in PLoS Genetics

  11. Cooperation of imipramine blue and tyrosine kinase blockade demonstrates activity against chronic myeloid leukemia

    Laidlaw, K. M. E., Berhan, S., Liu, S., Silvestri, G., Holyoake, T. L., Frank, D. A., Aggarwal, B., Bonner, M. Y., Perrotti, D., Jørgensen, H. G. & Arbiser, J. L., 9 Aug 2016

    Article in Oncotarget

  12. Cyclin A1 and P450 aromatase promote metastatic homing and growth of stem-like prostate cancer cells in the bone marrow

    Miftakhova, R., Hedblom, A., Semenas, J., Robinson, B. D., Simoulis, A., Malm, J., Rizvanov, A., David Heery, D., Mongan, N. P., Maitland, N. J., Allegrucci, C. & Persson, J. L., 15 Apr 2016

    Article in Cancer research

  13. Cysteine peptidase B regulates Leishmania mexicana virulence through the modulation of GP63 expression

    Mottram, J. C., Pierre-Andre, C., McMaster, W. R., Martel, C., Oliver, M. & Descoteaux, A., 18 May 2016

    Article in PLOS PATHOGENS

  14. DRI-Grass: a new experimental platform for addressing grassland ecosystem responses to future precipitation scenarios in south-east Australia

    Power, S. A., Barnett, K., Ochoa-Hueso, R., Facey, S. L., Gibson-Forty, E. V. J., Hartley, S. E., Nielsen, U. N., Tissue, D. T. & Johnson, S. N., 20 Sep 2016

    Article in Frontiers in Plant Science

  15. Daily rhythmicity of high affinity copper transport

    Perea-García, A., Sanz, A., Moreno, J., Andres-Borderia, A., Mayo de Andres, S., Davis, A. M., Huijser, P., Davis, S. J. & Peñarrubia, L., 2016

    Article in Plant Signaling and Behavior

  16. Decline of a rare moth at its last known English site: causes and lessons for conservation

    Baker, D., Barrett, S., Beale, C. M., Crawford, T. J., Ellis, S., Gullett, T., Mayhew, P. J., Parsons, M. S., Relf, P., Robertson, P., Small, J. & Wainwright, D., 22 Jun 2016

    Article in PLoS ONE

  17. Differential gene expression according to race and host plant in the pea aphid

    Eyres, I., Jaquiéry, J., Sugio, A., Duvaux, L., Gharbi, K., Zhou, J-J., Legeai, F., Nelson, M., Simon, J-C., Smadja, C. M., Butlin, R. & Ferrari, J., 12 Sep 2016

    Article in Molecular Ecology

  18. Direct Evidence for Packaging Signal-Mediated Assembly of Bacteriophage MS2

    Rolfsson, Ó., Middleton, S., Manfield, I. W., White, S. J., Fan, B., Vaughan, R., Ranson, N. A., Dykeman, E., Twarock, R., Ford, J., Cheng Kao, C. & Stockley, P. G., 29 Jan 2016

    Article in Journal of Molecular Biology

  19. Does cooperation mean kinship between spatially discrete ant nests?

    Procter, D., Cottrell, J., Watts, K., A'Hara, S., Hofreiter, M. & Robinson, E. J. H., Dec 2016

    Article in Ecology and Evolution

  20. EphrinB1/EphB3b Coordinate Bidirectional Epithelial-Mesenchymal Interactions Controlling Liver Morphogenesis and Laterality

    Cayuso, J., Dzementsei, A., Fischer, J. C., Karemore, G., Caviglia, S., Bartholdson, J., Wright, G. J. & Ober, E. A., 7 Nov 2016

    Article in Developmental Cell

  21. Epidermal Notch1 recruits RORγ+ group 3 innate lymphoid cells to orchestrate normal skin repair

    Li, Z., Hodgkinson, T., Gothard, E. J., Boroumand, S., Cummins, I., Narang, P., Sawtell, A. K., Coles, J., Leonov, G., Reboldi, A., Buckley, C., Cupedo, T., Siebel, C., Bayat, A., Coles, M. C. & Ambler, C., 21 Apr 2016

    Article in Nature Communications

  22. Evaluation of Antigens for Development of a Serological Test for Human African Trypanosomiasis

    Biéler, S., Waltenberger, H., Barrett, M. P., McCulloch, R., Mottram, J. C., Carrington, M., Schwaeble, W., McKerrow, J., Phillips, M. A., Michels, P. A., Büscher, P., Sanchez, J-C., Bishop, R., Robinson, D. R., Bangs, J., Ferguson, M., Nerima, B., Albertini, A., Michel, G., Radwandska, M. & 1 others, Ndung'u, J. M., 9 Dec 2016

    Article in PLoS ONE

  23. Evolutionary novelty in a butterfly wing pattern through enhancer shuffling

    Wallbank, R. W. R., Baxter, S. W., Pardo-Diaz, C., Hanly, J. J., Martin, S. H., Mallet, J., Dasmahapatra, K. K., Salazar, C., Joron, M., Nadeau, N. J., McMillan, W. O. & Jiggins, C. D., 15 Jan 2016

    Article in PLoS Biology

  24. From local scenarios to national maps: a participatory framework for envisioning the future of Tanzania

    Capitani, C., Mukama, K., Mbilinyi, B., Malugu, I., Munishi, P., Burgess, N. D., Platts, P. J., Sallu, S. & Marchant, R., 14 Jul 2016

    Article in Ecology and Society

  25. Human migration activities drive the fluctuation of ARGs: Case study of landfills in Nanjing, eastern China

    Sun, M., Ye, M., Schwab, A. P., Li, X., Wan, J., Wei, Z., Wu, J., Friman, V-P., Liu, K., Tian, D., Liu, M., Li, H., Hu, F. & Jiang, X., 5 Sep 2016

    Article in Journal of hazardous materials

  26. Influence of laser polarization on collective electron dynamics in ultraintense laser-foil interactions

    Gonzalez-Izquierdo, B., Gray, R. J., King, M., Wilson, R., Dance, R. J., Powell, H., MacLellan, D. A., McCreadie, J., Butler, N. M. H., Hawkes, S., Murphy, C. D., Stockhausen, L. C., Carroll, D. C., Booth, N., Scott, G. G., Borghesi, M., Neely, D. & McKenna, P., 2016

    Article in High Power Laser Science and Engineering

  27. Integrin-Alpha IIb Identifies Murine Lymph Node Lymphatic Endothelial Cells Responsive to RANKL

    Cordeiro, O. G., Chypre, M., Brouard, N., Rauber, S., Alloush, F., Romera-Hernandez, M., Benezech, C., Li, Z., Eckly, A., Coles, M. C., Rot, A., Yagita, H., Leon, C., Ludewig, B., Cupedo, T., Lanza, F. & Mueller, C. G., Mar 2016

    Article in PLoS ONE

  28. Laboratory analogue of a supersonic accretion column in a binary star system

    Cross, J. E., Gregori, G., Foster, J. M., Graham, P., Bonnet-Bidaud, J. M., Busschaert, C., Charpentier, N., Danson, C. N., Doyle, H. W., Drake, R. P., Fyrth, J., Gumbrell, E. T., Koenig, M., Krauland, C., Kuranz, C. C., Loupias, B., Michaut, C., Mouchet, M., Patankar, S., Skidmore, J. & 5 others, Spindloe, C., Tubman, E. R., Woolsey, N., Yurchak, R. & Falize, E., 13 Jun 2016

    Article in Nature Communications

  29. Land cover change and carbon emissions over 100 years in an African biodiversity hotspot

    Willcock, S., Phillips, O. L., Platts, P. J., Swetnam, R. D., Balmford, A., Burgess, N. D., Ahrends, A., Bayliss, J., Doggart, N., Doody, K., Fanning, E., Green, J. M. H., Hall, J., Howell, K. L., Lovett, J. C., Marchant, R., Marshall, A. R., Mbilinyi, B., Munishi, P. K. T., Owen, N. & 2 others, Topp-Jorgensen, E. J. & Lewis, S. L., 2016

    Article in Global Change Biology

  30. Light-sensing phytochromes feel the heat

    Davis, S. J. & Halliday, K. J., 18 Nov 2016

    Article in Science

  31. Linkage Mapping of Stem Saccharification Digestibility in Rice

    Liu, B., Gómez, L. D., Hua, C., Sun, L., Ali, I., Huang, L., Yu, C., Simister, R., Steele-King, C., Gan, Y. & McQueen-Mason, S. J., 12 Jul 2016

    Article in PLoS ONE

  32. Local termination criteria for Stochastic Diffusion Search: a comparison with the behaviour of ant nest-site selection

    Bishop, J. M., Martin, A. O. & Robinson, E. J. H., 20 Sep 2016, Lecture Notes in Artificial Intelligence: Proceedings of the 8th International Conference on Computational Collective Intelligence (ICCCI 2016), Halkidiki, Greece. Nguyen, N-T., Manolopoulos, Y., Iliadis, L. & Trawiński, B. (eds.). Springer-Verlag, Vol. 9875. 13 p. (Lecture Notes in Artificial Intelligence).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  33. Long Terminal Repeat Circular DNA as Markers of Active Viral Replication of Human T Lymphotropic Virus-1 in Vivo

    Fox, J. M., Hilburn, S., Demontis, M. A., Brighty, D., Rios Grassi, M. F., Galvão-Castro, B., Taylor, G. & Martin, F., 14 Mar 2016

    Article in Viruses

  34. Longitudinal imaging of the ageing mouse

    Dall'Ara, E., Boudiffa, M., Taylor, C., Schug, D., Fiegle, E., Kennerley, A. J., Damianou, C., Tozer, G. M., Kiessling, F. & Müller, R., Dec 2016

    Review article in Mechanisms of ageing and development

  35. Low-level regulatory T-cell activity is essential for functional type-2 effector immunity to expel gastrointestinal helminths

    Smith, K. A., Filbey, K. J., Reynolds, L. A., Hewitson, J. P., Harcus, Y., Boon, L., Sparwasser, T., Hämmerling, G. & Maizels, R. M., Mar 2016

    Article in Mucosal Immunology

  36. Malaria parasite CelTOS targets the inner leaflet of cell membranes for pore- dependent disruption

    Jimah, J. R., Salinas, N. D., Sala-rabanal, M., Jones, N. G., Sibley, L. D., Nichols, C. G., Schlesinger, P. H. & Tolia, N. H., 1 Dec 2016

    Article in eLife

  37. Modulation of copper deficiency responses by diurnal and circadian rhythms in Arabidopsis thaliana

    Perea-García, A., Andrés-Bordería, A., Mayo de Andrés, S., Sanz, A., Davis, A. M., Davis, S. J., Huijser, P. & Peñarrubia, L., Jan 2016

    Article in Journal of Experimental Botany

  38. Molecular architecture of the complete COG tethering complex

    Ha, J. Y., Chou, H-T., Ungar, D., Yip, C. K., Walz, T. & Hughson, F. M., 18 Jul 2016

    Article in Nature Structural & Molecular Biology

  39. Morphology-Specific Inhibition of β-Amyloid Aggregates by 17β-Hydroxysteroid Dehydrogenase Type 10

    Aitken, L., Quinn, S. D., Perez-Gonzalez, C., Samuel, I. D. W., Penedo, J. C. & Gunn-Moore, F. J., 2 Jun 2016

    Article in Chembiochem

  40. New advances in chromosome architecture

    Leake, M. C., 14 Jun 2016, Chromosome Architecture: Methods and Protocols . Leake, M. C. (ed.). Springer, 5 p. (Methods in Molecular Biology; vol. 1431).

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)peer-review

  41. New frontiers in belowground ecology for plant protection from root-feeding insects

    Johnson, S. N., Benefer, C. M., Frew, A., Griffiths, B. S., Hartley, S. E., Karley, A. J., Schumann, M., Sonnemann, I. & Robert, C. A. M., Dec 2016

    Article in Applied Soil Ecology

  42. Novel O-linked methylated glycan antigens decorate secreted immunodominant glycoproteins from the intestinal nematode Heligmosomoides polygyrus

    Hewitson, J. P., Nguyen, D. L., van Diepen, A., Smit, C. H., Koeleman, C. A., McSorley, H. J., Murray, J., Maizels, R. M. & Hokke, C. H., Mar 2016

    Article in International Journal for Parasitology

  43. PNT1 is a C11 Cysteine Peptidase Essential for Replication of the Trypanosome Kinetoplast.

    Grewal, J., McLuskey, K., Das, D., Myburgh, E., Wilkes, J., Brown, E., Lemgruber, L., Gould, M. K., Burchmore, R. J., Coombs, G. H., Schnaufer, A. & Mottram, J. C., 29 Apr 2016

    Article in Journal of Biological Chemistry

  44. Probiotic diversity enhances rhizosphere microbiome function and plant disease suppression

    HU, J., Wei, Z., Friman, V-P., Gu, S., Wang, X., Eisenhauer, N., Yang, T., Ma, J., Shen, Q., Xu, Y. & Jousset, A., 13 Dec 2016

    Article in MBio

  45. Proteasome inhibition for treatment of leishmaniasis, Chagas disease and sleeping sickness

    Khare, S., Nagle, A. S., Biggart, A., Lai, Y. H., Liang, F., Davis, L. C., Barnes, S. W., Mathison, C. J. N., Myburgh, E., Gao, M-Y., Gillespie, J. R., Liu, X., Tan, J. L., Stinson, M., Rivera, I. C., Ballard, J., Yeh, V., Groessl, T., Federe, G., Koh, H. X. Y. & 15 others, Venable, J. D., Bursulaya, B., Shapiro, M., Mishra, P. K., Spraggon, G., Brock, A., Mottram, J. C., Buckner, F. S., Rao, S. P. S., Wen, B. G., Walker, J. R., Tuntland, T., Molteni, V., Glynne, R. J. & Supek, F., 8 Sep 2016

    Article in Nature

  46. Protein sequences bound to mineral surfaces persist into deep time

    Demarchi, B., Hall, S., Roncal-Herrero, T., Freeman, C., Woolley, J., Crisp, M. K., Wilson, J. C., Fotakis, A., Fischer, R., Kessler, B., Rakownikow Jersie-Christensen, R., Olsen, J., Haile, J., Thomas, J., Marean, C., Parkington, J., Presslee, S. L., Lee-Thorp, J., Ditchfield, P., Hamilton, J. F. & 16 others, Ward, M. W., Wang, C. M., Shaw, M., Harrison, T., Dominguez-Rodrigo, M., MacPhee, R., Kwekason, A., Ecker, M., Kolska Horwitz, L., Chazan, M., Kröger, R., Thomas-Oates, J. E., Harding, J., Cappellini, E., Penkman, K. E. H. & Collins, M. J., 27 Sep 2016

    Article in eLife

  47. Rapid dissemination of human T-lymphotropic virus type 1 during primary infection in transplant recipients

    Cook, L., Melamed, A., Demontis, M. A., Laydon, D., Fox, J. M., Tosswill, J., de Freitas, D., Price, A., Medcalf, J., Martin, F., Neuberger, J., Bangham, C. & Taylor, G., 8 Jan 2016

    Article in Retrovirology

  48. Rapid evolution of microbe-mediated protection against pathogens in a worm host

    King, K. C., Brockhurst, M. A., Vasieva, O., Paterson, S., Betts, A., Ford, S. A., Frost, C. L., Horsburgh, M. J., Haldenby, S. & Hurst, G. DD., 15 Mar 2016

    Article in The ISME Journal

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