Search research publications and outputs

  1. A DiCre recombinase-based system for inducible expression in Leishmania major

    Santos, R. E. R. S., Silva, G. L. A., Santos, E. V., Duncan, S. M., Mottram, J. C., Damasceno, J. D. & Tosi, L. R. O., 1 Sep 2017

    Article in MOLECULAR AND BIOCHEMICAL PARASITOLOGY

  2. A Modest Addendum to the English Sediment Core Meta-Database

    Woodhouse, E. L., Ratcliffe, J. L., Andersen, R., Suggitt, A., Maclean, I. & Payne, R. J., 20 Feb 2017

    Article in Open Quaternary

  3. A New Chicken Genome Assembly Provides Insight into Avian Genome Structure

    Warren, W. C., Hillier, L. W., Tomlinson, C., Minx, P., Kremitzki, M., Graves, T., Markovic, C., Bouk, N., Pruitt, K. D., Thibaud-Nissen, F., Schneider, V., Mansour, T. A., Brown, C. T., Zimin, A., Hawken, R., Abrahamsen, M., Pyrkosz, A. B., Morisson, M., Fillon, V., Vignal, A. & 12 others, Chow, W., Howe, K., Fulton, J. E., Miller, M. M., Lovell, P., Mello, C. V., Wirthlin, M., Mason, A. S., Kuo, R., Burt, D. W., Dodgson, J. B. & Cheng, H. H., 5 Jan 2017

    Article in G3: Genes, Genomes, Genetics

  4. A Plant-Feeding Nematode Indirectly Increases the Fitness of an Aphid

    Hoysted, G. A., Lilley, C. J., Field, K. J., Dickinson, M., Hartley, S. E. & Unwin, P. E., 3 Nov 2017

    Article in Frontiers in Plant Science

  5. A national-scale assessment of climate change impacts on species: assessing the balance of risks and opportunities for multiple taxa

    Pearce-Higgins, J. W., Beale, C. M., Oliver, T., August, T., Carroll, M. J., Massimino, D., Ockendon, N., Savage, J., Wheatley, C. J., Ausden, M., Bradbury, R. B., Duffield, S., Macgregor, N., McClean, C. J., Morecroft, M. D., Thomas, C., Watts, O., Beckmann, B., Fox, R., Roy, H. E. & 3 others, Sutton, P., Walker, K. & Crick, H. Q. P., 1 Sep 2017

    Article in Biological Conservation

  6. A pan-tropical analysis of the impacts of forest degradation and conversion on local temperature

    Senior, R. A., Hill, J. K., Gonzalez del Pliego, P., Goode, L. K. & Edwards, D. P., 1 Oct 2017

    Article in Ecology and Evolution

  7. A spatial interactome reveals the protein organization of the algal CO2 concentrating mechanism

    Mackinder, L., Chen, C., Leib, R., Patena, W., Blum, S. R., Rodman, M., Ramundo, S., Adams, C. M. & Jonikas, M. C., 21 Sep 2017

    Article in Cell

  8. A structurally distinct TGF-β mimic from an intestinal helminth parasite potently induces regulatory T cells.

    Johnston, C. J. C., Smyth, D. J., Kodali, R. B., White, M. P. J., Harcus, Y., Filbey, K. J., Hewitson, J. P., Hinck, C. S., Ivens, A., Kemter, A. M., Kildemoes, A. O., Le Bihan, T., Soares, D. C., Anderton, S. M., Brenn, T., Wigmore, S. J., Woodcock, H. V., Chambers, R. C., Hinck, A. P., McSorley, H. J. & 1 others, Maizels, R. M., 23 Nov 2017

    Article in Nature Communications

  9. A transatlantic perspective on 20 emerging issues in biological engineering

    Wintle, B. C., Boehm, C. R., Rhodes, C., Molloy, J. C., Millett, P., Adam, L., Breitling, R., Carlson, R., Casagrande, R., Dando, M., Doubleday, R., Drexler, E., Edwards, B., Ellis, T., Evans, N. G., Hammond, R., Haseloff, J., Kahl, L., Kuiken, T., Lichman, B. R. & 9 others, Matthewman, C. A., Napier, J. A., ÓhÉigeartaigh, S. S., Patron, N. J., Perello, E., Shapira, P., Tait, J., Takano, E. & Sutherland, W. J., 14 Nov 2017

    Article in eLife

  10. An oleuropein β-glucosidase from olive fruit is involved in determining the phenolic composition of virgin olive oil

    Velazquez-Palmero, D., Romero-Segura, C., Garcia-Rodriguez, R., Hernandez, M. L., Vaistij, F. E., Graham, I. A., Perez, A. G. & Martinez-Rivas, J. M., 7 Nov 2017

    Article in Frontiers in Plant Science

  11. Application of Bacteriophages

    Aminov, R., Caplin, J., Chanishvili, N., Coffey, A., Cooper, I., De Vos, D., Doskar, J., Friman, V-P., Kurtboke, I., Pantucek, R., Pirnay, J-P., Resch, G., Rohde, C., Sybesma, W. & Wittmann, J., 11 Apr 2017

    Article in Microbiology Australia

  12. Architecture and dynamics of the jasmonic acid gene regulatory network

    Hickman, R., Van Verk, M. C., Van Dijken, A. J. H., Pereira Mendes, M., Vroegop-Vos, I. A., Caarls, L., Steenbergen, M., Van der Nagel, I., Wesselink, G. J., Jironkin, A., Talbot, A., Rhodes, J., De Vries, M., Schuurink, R. C., Denby, K., Pieterse, C. M. J. & Van Wees, S. CM., 1 Sep 2017

    Article in The Plant Cell

  13. Architecture of eukaryotic mRNA 3'-end processing machinery

    Casañal, A., Kumar, A., Hill, C. H., Easter, A. D., Emsley, P., Degliesposti, G., Gordiyenko, Y., Santhanam, B., Wolf, J., Wiederhold, K., Dornan, G. L., Skehel, M., Robinson, C. V. & Passmore, L. A., 24 Nov 2017

    Article in Science (New York, N.Y.)

  14. Argonaute Utilization for miRNA Silencing Is Determined by Phosphorylation-Dependent Recruitment of LIM-Domain-Containing Proteins

    Bridge, K. S., Shah, K. M., Li, Y., Foxler, D. E., Wong, S. C. K., Miller, D. C., Davidson, K. M., Foster, J. G., Rose, R., Hodgkinson, M. R., Ribeiro, P. S., Aboobaker, A. A., Yashiro, K., Wang, X., Graves, P. R., Plevin, M. J., Lagos, D. & Sharp, T. V., 5 Jul 2017

    Article in Cell reports

  15. Assembly and comparison of two closely related Brassica napus genomes

    Bayer, P. E., Hurgobin, B., Golicz, A. A., Chan, C-K. K., Yuan, Y., Lee, H., Renton, M., Meng, J., Li, R., Long, Y., Zou, J., Bancroft, I., Chalhoub, B., King, G. J., Batley, J. & Edwards, D., 21 Nov 2017

    Article in Plant biotechnology journal

  16. Biotin tagging of MeCP2 in mice reveals contextual insights into the Rett syndrome transcriptome

    Johnson, B. S., Zhao, Y-T., Fasolino, M., Lamonica, J. M., Kim, Y. J., Georgakilas, G., Wood, K. H., Bu, D., Cui, Y., Goffin, D. L., Vahedi, G., Kim, T. H. & Zhou, Z., 1 Oct 2017

    Article in Nature Medicine

  17. C9orf72 poly GA RAN-translated protein plays a key role in amyotrophic lateral sclerosis via aggregation and toxicity

    Lee, Y-B., Baskaran, P., Gomez-Deza, J., Chen, H-J., Nishimura, A. L., Smith, B. N., Troakes, C., Adachi, Y., Stepto, A., Petrucelli, L., Gallo, J-M., Hirth, F., Rogelj, B., Guthrie, S. & Shaw, C. E., 15 Dec 2017

    Article in Human Molecular Genetics

  18. COPI mediates recycling of an exocytic SNARE by recognition of a ubiquitin sorting signal

    Xu, P., Hankins, H. M., MacDonald, C., Erlinger, S. J., Frazier, M. N., Diab, N. S., Piper, R. C., Jackson, L. P., MacGurn, J. A. & Graham, T. R., 31 Oct 2017

    Article in eLife

  19. Can collective memories shape fish distributions? A test, linking space-time occurrence models and population demographics

    MacDonald, J., Logemann, K., Krainski, E., Sigurdsson, P., Beale, C. M., Huse, G., Hjollo, S. & Marteinsdottir, G., 13 Sep 2017

    Article in Ecography

  20. Circadian rhythms vary over the growing season and correlate with fitness components

    Rubin, M., Brock, M., Davis, A. M., German, Z., Knapp, M., Welch, S., Harmer, S. L., Maloof, J. N., Davis, S. J. & Weinig, C., 1 Oct 2017

    Article in Molecular Ecology

  21. Complex roles of myoglianin in regulating adult performance and lifespan

    Augustin, H., Adcott, J., Elliott, C. J. H. & Partridge, L., 1 Oct 2017

    Article in Fly

  22. Conducting robust ecological analyses with climate data

    Suggitt, A., Platts, P. J., Barata, I. M., Bennie, J. J., Burgess, M. D., Bystriakova, N., Duffield, S., Ewing, S. R., Gillingham, P. K., Harper, A. B., Hartley, A. J., Hemming, D. L., Maclean, I. M. D., Maltby, K., Marshall, H. H., Morecroft, M. D., Pearce-Higgins, J. W., Pearce-Kelly, P., Phillimore, A. B., Price, J. T. & 4 others, Pyke, A., Stewart, J. A., Warren, R. & Hill, J. K., 1 Nov 2017

    Article in Oikos

  23. Conformational heterogeneity in a fully-complementary DNA three-way junction with a GC-rich branchpoint

    Toulmin, A., Baltierra-Jasso, L. E., Morten, M. J., Sabir, T., McGlynn, P., Schroeder, G. F., Smith, B. O. & Magennis, S. W., 19 Sep 2017

    Article in Biochemistry

  24. Conserved asymmetry underpins homodimerization of Dicer-associated double-stranded RNA-binding proteins

    Heyam, A., Coupland, C. E., Dégut, C., Haley, R. A., Baxter, N. J., Jakob, L., Aguiar, P. M., Meister, G., Williamson, M. P., Lagos, D. & Plevin, M. J., 1 Dec 2017

    Article in Nucleic Acids Research

  25. Continent-level drivers of African pyrodiversity

    Hempson, G. J., Parr, C. L., Archibald, S., Anderson, T. M., Courtney-Mustaphi, C. J., Dobson, A. P., Donaldson, J. E., Morrison, T. A., Probert, J., Beale, C. M. & Anderson, T. M., 11 Jul 2017, (E-pub ahead of print)

    Article in Ecography

  26. Control of serine integrase recombination directionality by fusion with the directionality factor

    Olorunniji, F. J., McPherson, A. L., Rosser, S. J., Smith, M. C. M., Colloms, S. D. & Stark, W. M., 21 Aug 2017

    Article in Nucleic Acids Research

  27. Correlative super-resolution fluorescence and electron microscopy using conventional fluorescent proteins in vacuo

    O'Toole, P. J., Peddie, C. J., Collinson, L. M., Larijani, B., Cox, S., Way, M., Domart, M-C. & Snetkov, X., 30 May 2017

    Article in JOURNAL OF STRUCTURAL BIOLOGY

  28. Deficiency of Cks1 leads to learning and long-term memory defects and p27 dependent formation of neuronal cofilin aggregates

    Kukalev, A., Ng, Y-M., Ju, L., Saidi, A., Lane, S., Grey, W. G., Mondragon, A., Dormann, D., Walker, S. E., Wing-Lok Ho, P., Stephens, D. N., Carr, A. M., Lamsa, K., Tse, E. & Yu, V. P. C. C., 4 Jan 2017

    Article in Cerebral Cortex

  29. Detecting the impact of temperature on transmission of Zika, dengue, and chikungunya using mechanistic models

    Mordecai, E. A., Cohen, J. M., Evans, M. V., Gudapati, P., Johnson, L. R., Lippi, C. A., Miazgowicz, K., Murdock, C. C., Rohr, J. R., Ryan, S. J., Savage, V., Shocket, M. S., Stewart Ibarra, A., Thomas, M. B. & Weikel, D. P., 27 Apr 2017, (E-pub ahead of print)

    Article in PLOS NEGLECTED TROPICAL DISEASES

  30. Dogger Bank: Weighing the Fog of War

    MacKay, N. J., Price, C. & Wood, A. J., 9 Jun 2017, (E-pub ahead of print)

    Article in Significance

  31. Elevating expression of MeCP2 T158M rescues DNA binding and Rett syndrome–like phenotypes

    Lamonica, J., Kwon, D., Goffin, D. L., Fenik, P., Johnson, B. S., Cui, Y., Guo, H., Veasey, S. & Zhou, Z., 1 May 2017

    Article in Journal of Clinical Investigation

  32. Empirical and theoretical investigation into the potential impacts of insecticide resistance on the effectiveness of insecticide-treated bed nets

    Glunt, K. D., Coetzee, M., Huijben, S., Koffi, A. A., Lynch, P. A., N'Guessan, R., Oumbouke, W. A., Sternberg, E. D. & Thomas, M. B., 7 Nov 2017

    Article in Evolutionary applications

  33. Enzyme reversal to explore the function of yeast E3 ubiquitin-ligases

    MacDonald, C., Winistorfer, S., Pope, R., Michael E, W. & Piper, R. C., 1 Jul 2017

    Article in Traffic

  34. Epithelial-to-mesenchymal transition drives a pro-metastatic Golgi compaction process through scaffolding protein PAQR11

    Tan, X., Banerjee, P., Guo, H-F., Ireland, S., Pankova, D., Ahn, Y., Nikolaidis, I. M., Liu, X., Zhao, Y., Xue, Y., Burns, A. R., Roybal, J., Gibbons, D. L., Zal, T., Creighton, C. J., Ungar, D., Wang, Y. & Kurie, J. M., 3 Jan 2017

    Article in Journal of Clinical Investigation

  35. Fear of predation drives stable and differentiated social relationships in guppies

    Heathcote, R. J. P., Darden, S. K., Franks, D. W., Ramnarine, I. W. & Croft, D. P., 2 Feb 2017

    Article in Scientific Reports

  36. Flexible silicon-based alpha-particle detector

    Schuster, C. S., Smith, B. R., Sanderson, B. J., Mullins, J. T., Atkins, J., Joshi, P., McNamara, L., Krauss, T. F. & Jenkins, D. G., 16 Aug 2017

    Article in Applied Physics Letters

  37. Frequent exchange of the DNA polymerase during bacterial chromosome replication

    Beattie, T. R., Kapadia, N., Nicolas, E., Uphoff, S., Wollman, A., Leake, M. C. & Reyes-Lamothe, R., 31 Mar 2017

    Article in eLife

  38. GB Non-native Species Rapid Risk Assessment: Rapid Risk Assessment of: Lasius neglectus (Invasive Garden Ant)

    Buckham-Bonnett, P. & Robinson, E. J. H., 11 Jan 2017, (Accepted/In press) GB Non-native Species Secretariat. 15 p. (GB Non-native Species Rapid Risk Assessments (NRRA))

    Research output: Book/ReportCommissioned report

  39. Genetic complexity of miscanthus cell wall composition and biomass quality for biofuels

    van der Weijde, T., Kamei, C. L. A., Severing, E. I., Torres, A. F., Gomez, L. D., Dolstra, O., Maliepaard, C. A., McQueen-Mason, S. J., Visser, R. G. F. & Trindade, L. M., 25 May 2017

    Article in BMC Genomics

  40. Genome sequence and genetic diversity of European ash trees

    Sollars, E., Harper, A. L., Kelly, L., Sambles, C., Ramirez-Gonzalez, R., Swarbreck, D., Kaithakottil, G., Cooper, E., Uauy, C., Havlickova, L., Worswick, G., Studholme, D., Zohren, J., Salmon, D., Clavijo, B., Li, Y., He, Z., Fellgett, A., McKinney, L., Nielsen, L. & 10 others, Douglas, G., Kjaer, E., Downie, A., Boshier, D., Lee, S., Clark, J., Grant, M., Bancroft, I., Caccamo, M. & Buggs, R., 12 Jan 2017

    Article in Nature

  41. Genome-wide and protein kinase-focused RNAi screens reveal conserved and novel damage response pathways in Trypanosoma brucei

    Stortz, J. A., Serafim, T. D., Alsford, S., Wilkes, J., Fernandez-Cortes, F., Hamilton, G., Briggs, E., Lemgruber, L., Horn, D., Mottram, J. C. & McCulloch, R., 24 Jul 2017

    Article in PLOS PATHOGENS

  42. Genome-wide linkage and association study implicates the 10q26 region as a major genetic contributor to primary nonsyndromic vesicoureteric reflux

    Darlow, J. M., Darlay, R., Dobson, M. G., Stewart, A., Charoen, P., Southgate, J., Baker, S. C., Xu, Y., Hunziker, M., Lambert, H. J., Green, A. J., Santibanez-Koref, M., Sayer, J. A., Goodship, T. H. J., Puri, P., Woolf, A. S., Kenda, R. B., Barton, D. E. & Cordell, H. J., 6 Nov 2017

    Article in Scientific Reports

  43. Genomic RNA folding mediates assembly of human parechovirus

    Twarock, R., Dykeman, E. C., Shakeel, S., White, S., Ora, A., Cockburn, J., Butcher, S. & Stockley, P., 23 Feb 2017

    Article in Nature Communications

  44. Harnessing Diversity from Ecosystems to Crops to Genes

    Buchanan-Wollaston, V., Wilson, Z., Tardieu, F., Beynon, J. & Denby, K., 30 Mar 2017

    Article in Food and Energy Security

  45. Hemopoietic-specific Sf3b1-K700E knock-in mice display the splicing defect seen in human MDS but develop anemia without ring sideroblasts

    Mupo, A., Seiler, M., Sathiaseelan, V., Pance, A., Yang, Y., Agrawal, AA., Iorio, F., Bautista, R., Pacharne, S., Tzelepis, K., Manes, N., Wright, P., Papaemmanuil, E., Kent, D. G., Campbell, P. C., Buonamici, S., Bolli, N. & Vassiliou, G. S., 1 Mar 2017

    Article in Leukemia

  46. High-Throughput, low-loss, low-cost, and label-free cell separation using electrophysiology-Activated cell enrichment

    Faraghat, S. A., Hoettges, K. F., Steinbach, M. K., van der Veen, D. R., Brackenbury, W. J., Henslee, E. A., Labeed, F. H. & Hughes, M. P., 13 Apr 2017

    Article in Proceedings of the National Academy of Sciences of the United States of America

  47. Historical biome distribution and recent human disturbance shape the diversity of arbuscular mycorrhizal fungi

    Partel, M., Öpik, M., Tedersoo, L., Szava-Kovats, R., Rosendahl, S., Rillig, M. C., Lekberg, Y., Kreft, H., Helgason, T., Eriksson, O., Davison, J., de Bello, F., Caruso, T., Zobel, M. & Moora, M., 19 Jul 2017

    Article in New Phytologist

  48. How does elevated ozone reduce methane emissions from peatlands?

    Toet, S., Oliver, V., Ineson, P., McLoughlin, S., Helgason, T., Peacock, S., Stott, A. W., Barnes, J. & Ashmore, M., 1 Feb 2017

    Article in Science of the Total Environment

  49. HpARI protein secreted by a helminth parasite suppresses interleukin-33

    Osbourne, M., Soares, D. C., Vacca, F., Cohen, E. S., Scott, I. C., Gregory, W. F., Smyth, D. J., Toivakka, M., Kemter, A. M., le Bihan, T., Wear, M., Hoving, D., Filbey, K. J., Hewitson, J. P., Henderson, H., Gonzalez-Ciscar, A., Errington, C., Vermeren, S., Astier, A. L., Wallace, W. A. & 4 others, Schwarze, J., Ivens, A. C., Maizels, R. M. & McSorley, H. J., 17 Oct 2017

    Article in Immunity

  50. Human vaccination against RH5 induces neutralizing antimalarial antibodies that inhibit RH5 invasion complex interactions.

    Payne, R. O., Silk, S. E., Elias, S. C., Miura, K., Diouf, A., Galaway, F., de Graaf, H., Brendish, N. J., Poulton, I. D., Griffiths, O. J., Edwards, N. J., Jin, J., Labbé, G. M., Alanine, D. G., Siani, L., Di Marco, S., Roberts, R., Green, N., Berrie, E., Ishizuka, A. S. & 22 others, Nielsen, C. M., Bardelli, M., Partey, F. D., Ofori, M. F., Barfod, L., Wambua, J., Murungi, L. M., Osier, F. H., Biswas, S., McCarthy, J. S., Minassian, A. M., Ashfield, R., Viebig, N. K., Nugent, F. L., Douglas, A. D., Vekemans, J., Wright, G. J., Faust, S. N., Hill, A. V., Long, C. A., Lawrie, A. M. & Draper, S. J., 2 Nov 2017

    Article in JCI Insight

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