Search research publications and outputs

  1. 2017
  2. Recessive mutations in the kinase ZAK cause a congenital myopathy with fibre type disproportion

    Vasli, N., Harris, E., Karamchandani, J., Bareke, E., Majewski, J., Romero, N. B., Stojkovic, T., Barresi, R., Tasfaout, H., Charlton, R., Malfatti, E., Bohm, J., Marini-Bettolo, C., Choquet, K., Dicaire, M-J., Shao, Y-H., Topf, A., O'Ferrall, E., Eymard, B., Straub, V. & 5 others, Blanco, G., Lochmüller, H., Brais, B., Laporte, J. & Tétreault, M., 1 Jan 2017

    Article in Brain : a journal of neurology

  3. Epithelial-to-mesenchymal transition drives a pro-metastatic Golgi compaction process through scaffolding protein PAQR11

    Tan, X., Banerjee, P., Guo, H-F., Ireland, S., Pankova, D., Ahn, Y., Nikolaidis, I. M., Liu, X., Zhao, Y., Xue, Y., Burns, A. R., Roybal, J., Gibbons, D. L., Zal, T., Creighton, C. J., Ungar, D., Wang, Y. & Kurie, J. M., 3 Jan 2017

    Article in Journal of Clinical Investigation

  4. A New Chicken Genome Assembly Provides Insight into Avian Genome Structure

    Warren, W. C., Hillier, L. W., Tomlinson, C., Minx, P., Kremitzki, M., Graves, T., Markovic, C., Bouk, N., Pruitt, K. D., Thibaud-Nissen, F., Schneider, V., Mansour, T. A., Brown, C. T., Zimin, A., Hawken, R., Abrahamsen, M., Pyrkosz, A. B., Morisson, M., Fillon, V., Vignal, A. & 12 others, Chow, W., Howe, K., Fulton, J. E., Miller, M. M., Lovell, P., Mello, C. V., Wirthlin, M., Mason, A. S., Kuo, R., Burt, D. W., Dodgson, J. B. & Cheng, H. H., 5 Jan 2017

    Article in G3: Genes, Genomes, Genetics

  5. Genome sequence and genetic diversity of European ash trees

    Sollars, E., Harper, A. L., Kelly, L., Sambles, C., Ramirez-Gonzalez, R., Swarbreck, D., Kaithakottil, G., Cooper, E., Uauy, C., Havlickova, L., Worswick, G., Studholme, D., Zohren, J., Salmon, D., Clavijo, B., Li, Y., He, Z., Fellgett, A., McKinney, L., Nielsen, L. & 10 others, Douglas, G., Kjaer, E., Downie, A., Boshier, D., Lee, S., Clark, J., Grant, M., Bancroft, I., Caccamo, M. & Buggs, R., 12 Jan 2017

    Article in Nature

  6. Increasing the potential for malaria elimination by targeting zoophilic vectors

    Waite, J. L., Swain, S., Lynch, P. A., Sharma, S. K., Haque, M. A., Montgomery, J. & Thomas, M. B., 16 Jan 2017

    Article in Scientific Reports

  7. Leishmania HASP and SHERP Genes are Required for In Vivo Differentiation, Parasite Transmission and Virulence Attenuation in the Host

    Doehl, J. S. P., Sádlová, J., Aslan, H., Pružinová, K., Metangmo, S., Votýpka, J., Kamhawi, S., Volf, P. & Smith, D. F., 17 Jan 2017

    Article in PLOS PATHOGENS

  8. Targeted re-sequencing confirms the importance of chemosensory genes in aphid host race differentiation

    Eyres, I., Duvaux, L., Gharbi, K., Tucker, R., Hopkins, D., Simon, J-C., Ferrari, J., Smadja, C. M. & Butlin, R. K., 17 Jan 2017

    Article in Molecular Ecology

  9. Reproductive Conflict and the Evolution of Menopause in Killer Whales

    Croft, D., Ellis, S., Franks, D. W., Nattrass, S., Johnstone, R. A., Brent, L. J. N., Mazzi, S., Balcomb, K. C., Ford, J. K. B. & Cant, M. A., 23 Jan 2017

    Article in Current Biology

  10. Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast.

    Jeffares, D. C., Jolly, C., Hoti, M., Speed, D., Shaw, L., Rallis, C., Balloux, F., Dessimoz, C., Bähler, J. & Sedlazeck, F. J., 24 Jan 2017

    Article in Nature Communications

  11. Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks

    Prigent, S., Frioux, C., Dittami, S. D., Larhlimi, A., Collet, G., Gutknecht, F., Got, J., Eveillard, D., Bourdon, J., Plewniak, F., Tonon, T. & Siegel, A., 27 Jan 2017

    Article in PLoS Computational Biology

  12. Sequence-based classification and identification of Fungi

    Hibbett, D., Abarenkov, K., Koljalg, U., Opik, M., Chai, B., Cole, J. R., Wang, Q., Crous, P. W., Robert, V. A. R. G., Helgason, T., Herr, J., Kirk, P., Lueschow, S., O'Donnell, K., Nilsson, H., Oono, R., Schoch, C. L., Smyth, C., Walker, D., Porras-Alfaro, A. & 2 others, Taylor, J. W. & Geiser, D. M., 30 Jan 2017

    Article in Mycologia

  13. Astrocytic transporters in Alzheimer's disease

    Ugbode, C., Hu, Y., Whalley, B. J., Peers, C., Rattray, M. & Dallas, M. L., 1 Feb 2017

    Review article in Biochemical journal

  14. How does elevated ozone reduce methane emissions from peatlands?

    Toet, S., Oliver, V., Ineson, P., McLoughlin, S., Helgason, T., Peacock, S., Stott, A. W., Barnes, J. & Ashmore, M., 1 Feb 2017

    Article in Science of the Total Environment

  15. Fear of predation drives stable and differentiated social relationships in guppies

    Heathcote, R. J. P., Darden, S. K., Franks, D. W., Ramnarine, I. W. & Croft, D. P., 2 Feb 2017

    Article in Scientific Reports

  16. The structure and function of an RNA polymerase interaction domain in the PcrA/UvrD helicase

    Sanders, K., Lin, C-L., Smith, A. J., Cronin, N., Fisher, G., Eftychidis, V., McGlynn, P., Savery, N. J., Wigley, D. B. & Dillingham, M. S., 4 Feb 2017

    Article in Nucleic Acids Research

  17. P113 is a merozoite surface protein that binds the N terminus of Plasmodium falciparum RH5.

    Galaway, F., Drought, L. G., Fala, M., Cross, N., Kemp, A. C., Rayner, J. C. & Wright, G. J., 10 Feb 2017

    Article in Nature Communications

  18. A Modest Addendum to the English Sediment Core Meta-Database

    Woodhouse, E. L., Ratcliffe, J. L., Andersen, R., Suggitt, A., Maclean, I. & Payne, R. J., 20 Feb 2017

    Article in Open Quaternary

  19. Genomic RNA folding mediates assembly of human parechovirus

    Twarock, R., Dykeman, E. C., Shakeel, S., White, S., Ora, A., Cockburn, J., Butcher, S. & Stockley, P., 23 Feb 2017

    Article in Nature Communications

  20. The Rehabilitation Effectiveness for Activities for Life (REAL) study: A national programme of research into NHS inpatient mental health rehabilitation services across England

    Killaspy, H., King, M., Holloway, F., Jamieson-Craig, T. K., Cook, S., Mundy, T., Leavey, G., McCrone, P. R., Koeser, L. A., Omar, R., Marston, L., Arbuthnott, M., Green, N., Harrison, I., Lean, M., Gee, M. & Bhanbro, S., Mar 2017

    Article in Programme Grants for Applied Research

  21. Hemopoietic-specific Sf3b1-K700E knock-in mice display the splicing defect seen in human MDS but develop anemia without ring sideroblasts

    Mupo, A., Seiler, M., Sathiaseelan, V., Pance, A., Yang, Y., Agrawal, AA., Iorio, F., Bautista, R., Pacharne, S., Tzelepis, K., Manes, N., Wright, P., Papaemmanuil, E., Kent, D. G., Campbell, P. C., Buonamici, S., Bolli, N. & Vassiliou, G. S., 1 Mar 2017

    Article in Leukemia

  22. Towards financially viable phytoextraction and production of plant-based palladium catalysts

    Harumain, Z. A. S., Parker, H. L., Muñoz García, A., Austin, M. J., McElroy, C. R., Hunt, A. J., Clark, J. H., Meech, J. A., Anderson, C. W. N., Ciacci, L., Graedel, T. E., Bruce, N. C. & Rylott, E. L., 7 Mar 2017

    Article in Environmental science & technology

  23. The importance of temperature fluctuations in understanding mosquito population dynamics and malaria risk

    Beck-Johnson, L. M., Nelson, W. A., Paaijmans, K. P., Read, A., Thomas, M. B. & Bjørnstad, O. N., 8 Mar 2017

    Article in Royal Society Open Science

  24. Inhibiting translation elongation can aid genome duplication in Escherichia coli

    Myka, K. K., Hawkins, M., Syeda, A. H., Gupta, M. K., Meharg, C., Dillingham, M. S., Savery, N. J., Lloyd, R. G. & McGlynn, P., 17 Mar 2017

    Article in Nucleic Acids Research

  25. Macrophage origin limits functional plasticity in helminth-bacterial co-infection

    Rückerl, D., Campbell, S. M., Duncan, S., Sutherland, T. E., Jenkins, S. J., Hewitson, J. P., Barr, T. A., Jackson-Jones, L. H., Maizels, R. M. & Allen, J. E., 23 Mar 2017

    Article in PLOS PATHOGENS

  26. Harnessing Diversity from Ecosystems to Crops to Genes

    Buchanan-Wollaston, V., Wilson, Z., Tardieu, F., Beynon, J. & Denby, K., 30 Mar 2017

    Article in Food and Energy Security

  27. X-ray spectroscopy of super-intense laser-produced plasmas for the study of nonlinear processes. Comparison with PIC simulations

    Dalimier, E., Ya Faenov, A., Oks, E., Angelo, P., Pikuz, T. A., Fukuda, Y., Andreev, A., Koga, J., Sakaki, H., Kotaki, H., Pirozhkov, A., Hayashi, Y., Skobelev, I. Y., Pikuz, S. A., Kawachi, T., Kando, M., Kondo, K., Zhidkov, A., Tubman, E., Butler, N. M. H. & 8 others, Dance, R. J., Alkhimova, M. A., Booth, N., Green, J., Gregory, C., McKenna, P., Woolsey, N. & Kodama, R., 30 Mar 2017

    Article in Journal of Physics: Conference Series

  28. Frequent exchange of the DNA polymerase during bacterial chromosome replication

    Beattie, T. R., Kapadia, N., Nicolas, E., Uphoff, S., Wollman, A., Leake, M. C. & Reyes-Lamothe, R., 31 Mar 2017

    Article in eLife

  29. Application of Bacteriophages

    Aminov, R., Caplin, J., Chanishvili, N., Coffey, A., Cooper, I., De Vos, D., Doskar, J., Friman, V-P., Kurtboke, I., Pantucek, R., Pirnay, J-P., Resch, G., Rohde, C., Sybesma, W. & Wittmann, J., 11 Apr 2017

    Article in Microbiology Australia

  30. High-Throughput, low-loss, low-cost, and label-free cell separation using electrophysiology-Activated cell enrichment

    Faraghat, S. A., Hoettges, K. F., Steinbach, M. K., van der Veen, D. R., Brackenbury, W. J., Henslee, E. A., Labeed, F. H. & Hughes, M. P., 13 Apr 2017

    Article in Proceedings of the National Academy of Sciences of the United States of America

  31. Elevating expression of MeCP2 T158M rescues DNA binding and Rett syndrome–like phenotypes

    Lamonica, J., Kwon, D., Goffin, D. L., Fenik, P., Johnson, B. S., Cui, Y., Guo, H., Veasey, S. & Zhou, Z., 1 May 2017

    Article in Journal of Clinical Investigation

  32. The nuclear matrix protein CIZ1 facilitates localization of Xist RNA to the inactive X-chromosome territory

    Ridings-Figueroa, R., Stewart, E. R., Nesterova, T. B., Coker, H., Pintacuda, G., Godwin, J., Wilson, R., Haslam, A., Lilley, F., Ruigrok, R., Bageghni, S. A., Albadrani, G., Mansfield, W., Roulson, J-A., Brockdorff, N., Ainscough, J. F. X. & Coverley, D. A., 1 May 2017

    Article in Genes & development

  33. Mutations in the vesicular trafficking protein annexin A11 are associated with amyotrophic lateral sclerosis

    Smith, B. N., Topp, S. D., Fallini, C., Shibata, H., Chen, H-J., Troakes, C., King, A., Ticozzi, N., Kenna, K. P., Soragia-Gkazi, A., Miller, J. W., Sato, A., Dias, D. M., Jeon, M., Vance, C., Wong, C. H., de Majo, M., Kattuah, W., Mitchell, J. C., Scotter, E. L. & 36 others, Parkin, N. W., Sapp, P. C., Nolan, M., Nestor, P. J., Simpson, M., Weale, M., Lek, M., Baas, F., Vianney de Jong, J. M., Ten Asbroek, A. L. M. A., Redondo, A. G., Esteban-Pérez, J., Tiloca, C., Verde, F., Duga, S., Leigh, N., Pall, H., Morrison, K. E., Al-Chalabi, A., Shaw, P. J., Kirby, J., Turner, M. R., Talbot, K., Hardiman, O., Glass, J. D., De Belleroche, J., Maki, M., Moss, S. E., Miller, C., Gellera, C., Ratti, A., Al-Sarraj, S., Brown, R. H., Silani, V., Landers, J. E. & Shaw, C. E., 3 May 2017

    Article in Science Translational Medicine

  34. The Nodulin 26-like intrinsic membrane protein OsNIP3;2 is involved in arsenite uptake by rice lateral roots

    Chen, Y., Sun, S., Tang, Z., Moore, KL., Maathuis, F. J. M., Miller, A. J., McGrath, S. & Zhao, FJ., 17 May 2017

    Article in Journal of Experimental Botany

  35. Proliferation Drives Aging-Related Functional Decline in a Subpopulation of the Hematopoietic Stem Cell Compartment.

    Kirschner, K., Chandra, T., Kiselev, V., Flores-Santa Cruz, D., Macaulay, IC., Park, HJ., Li, J., Kent, DG., Kumar, R., Pask, DC., Hamilton, TL., Hemberg, M., Reik, W. & Green, AR., 23 May 2017

    Article in Cell reports

  36. Silicon-induced root nodulation and synthesis of essential amino acids in a legume is associated with higher herbivore abundance

    Hartley, S. E., Johnson, S. N., Ryalls, J. M. W., Frew, A., DeGabriel, J. L., Duncan, M. & Gherlenda, A. N., 24 May 2017

    Article in Functional Ecology

  37. Genetic complexity of miscanthus cell wall composition and biomass quality for biofuels

    van der Weijde, T., Kamei, C. L. A., Severing, E. I., Torres, A. F., Gomez, L. D., Dolstra, O., Maliepaard, C. A., McQueen-Mason, S. J., Visser, R. G. F. & Trindade, L. M., 25 May 2017

    Article in BMC Genomics

  38. Modelling habitat conversion in miombo woodlands: Insights from Tanzania

    Lobora, A. L., Nahonyo, C. L., Munishi, L. K., Caro, T., Foley, C. & Beale, C. M., 29 May 2017

    Article in Journal of Land Use Science

  39. Correlative super-resolution fluorescence and electron microscopy using conventional fluorescent proteins in vacuo

    O'Toole, P. J., Peddie, C. J., Collinson, L. M., Larijani, B., Cox, S., Way, M., Domart, M-C. & Snetkov, X., 30 May 2017

    Article in JOURNAL OF STRUCTURAL BIOLOGY

  40. Jasmonic acid-dependent regulation of seed dormancy following maternal herbivory in Arabidopsis

    Singh, P., Dave, A., Vaistij, F. E., Worrall, D., Holroyd, G., Wells, J., Kaminski, F., Graham, I. A. & Roberts, M., Jun 2017

    Article in New Phytologist

  41. Palaeogenomes of Eurasian straight-tusked elephants challenge the current view of elephant evolution

    Meyer, M., Palkopoulou, E., Baleka, S., Stiller, M., Penkman, K. E. H., Alt, K. W., Ishida, Y., Mania, D., Mallick, S., Meijer, T., Meller, H., Nagel, S., Nickel, B., Ostritz, S., Rohland, N., Schauer, K., Schüler, T., Roca, A. L., Reich, D., Shapiro, B. & 1 others, Hofreiter, M., 6 Jun 2017

    Article in eLife

  42. Methodology for reliable and reproducible cryopreservation of human cervical tissue

    Fox, J. M., Wiggins, R. C., Moore, J. W. J., Brewer, C., Andrew, A. C. & Martin, F., 9 Jun 2017

    Article in Cryobiology

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