Search research publications and outputs

  1. Zinc-dependent multimerization of mutant calreticulin is required for MPL binding and MPN pathogenesis

    Rivera, J. F., Baral, A. J., Nadat, F., Boyd, G., Smyth, R., Patel, H., Burman, E. L., Alameer, G., Boxall, S. A., Jackson, B. R., Baxter, J., Laslo, P., Green, A. R., Kent, D. G., Mullally, A. & Chen, E., 5 Apr 2021, (E-pub ahead of print)

    Article in Blood Advances

  2. XBAT31 regulates thermoresponsive hypocotyl growth through mediating degradation of the thermosensor ELF3 in Arabidopsis

    Zhang, L-L., Shao, Y-J., Ding, L., Wang, M-J., Davis, S. J. & Liu, J-X., 1 Mar 2021, (Accepted/In press)

    Article in Science Advances

  3. What is quantitative plant biology?

    Autran, D., Bassel, G. W., Chae, E., Ezer, D., Ferjani, A., Fleck, C., Hamant, O., Hartmann, F. P., Jiao, Y., Johnston, I. G., Kwiatkowska, D., Lim, B. L., Mahonen, A. P., Morris, R. J., Mulder, B. M., Nakayama, N., Sozzani, R., Strader, L. C., Tusscher, K. T., Ueda, M. & 1 others, Wolf, S., 20 May 2021

    Article in Quantitative Plant Biology

  4. Validation of a novel associative transcriptomics pipeline in Brassica oleracea: Identifying candidates for vernalisation response

    Woodhouse, S., He, Z., Woolfenden, H., Steuernagel, B., Haerty, W., Bancroft, I., Irwin, J. A., Morris, R. J. & Wells, R., 13 Jul 2021

    Article in BMC Genomics

  5. Validation of IMS-MS as a screening tool to identify type II kinase inhibitors of FGFR1 kinase

    Beeston, H., Klein, T., Norman, R., Tucker, J. A., Anderson, M., Ashcroft, A. E. & Holdgate, G., 26 May 2021, (E-pub ahead of print)

    Article in Rapid Communications in Mass Spectrometry

  6. Validating layer-specific VASO across species

    Huber, L., Poser, B. A., Kaas, A. L., Fear, E. J., Dresbach, S., Berwick, J., Goebel, R., Turner, R. & Kennerley, A. J., 15 Aug 2021

    Article in Neuroimage

  7. Tuning MPL signaling to influence hematopoietic stem cell differentiation and inhibit essential thrombocythemia progenitors

    Cui, L., Moraga, I., Lerbs, T., Van Neste, C., Wilmes, S., Tsutsumi, N., Trotman-Grant, A. C., Gakovic, M., Andrews, S., Gotlib, J., Darmanis, S., Enge, M., Quake, S., Hitchcock, I. S., Piehler, J., Garcia, K. C. & Wernig, G., 12 Jan 2021

    Article in Proceedings of the National Academy of Sciences of the United States of America

  8. Transformations to Regenerative Food Systems- An outline of the FixOurFood project

    Doherty, B., Bryant, M., Denby, K., Fazey, I. R. A., Bridle, S., Hawkes, C., Cain, M., Banwart, S., Collins, L., Pickett, K., Allen, M., Ball, P. D., Gardner, G. E., Carmen, E., Sinclair, M., Kluczkovski, A., Ehgartner, U., Morris, B., James, A., Yap, C. & 2 others, Om, S. & Connolly, A., 12 Dec 2021, (E-pub ahead of print)

    Article in Nutrition Bulletin

  9. Time series transcriptomics reveals a BBX32-directed control of acclimation to high light in mature Arabidopsis leaves

    Alvarez-Fernandez, R., Penfold, C. A., Galvez-Valdivieso, G., Exposito-Rodriguez, M., Stallard, E. J., Bowden, L., Moore, J. D., Mead, A., Davey, P. A., Matthews, J. S. A., Beynon, J., Buchanan-Wollaston, V., Wild, D. L., Lawson, T., Bechtold, U., Denby, K. & Mullineaux, P. M., 6 Aug 2021, (E-pub ahead of print)

    Article in The Plant journal

  10. The structural basis for high-affinity uptake of lignin-derived aromatic compounds by proteobacterial TRAP transporters

    Bisson, C., Salmon, R. C., West, L., Rafferty, J. B., Hitchcock, A., Thomas, G. H. & Kelly, D. J., 18 Aug 2021

    Article in FEBS Journal

  11. The role of human and mosquito behaviour in the efficacy of a house-based intervention: Lethal House Lure for Malaria Mosquitoes

    Barreaux, A. M. G., Oumbouke, W. A., Brou, NG., Tia, I. Z., Ahoua Alou, L. P., Doudou, D. T., Koffi, A. A., N'Guessan, R., Sternberg, E. D. & Thomas, M. B., 15 Feb 2021

    Article in Philosophical Transactions of the Royal Society B: Biological Sciences

  12. The relative importance of soil moisture in predicting bacterial wilt disease occurrence

    Jiang, G., Ningqi, W., Yaoyu, Z., Wang, Z., Zhang, Y., Yu, J., Zhang, Y., Wei, Z., Xu, Y-C., Geisen, S., Friman, V-P. & Shen, Q., 15 Apr 2021, (E-pub ahead of print)

    Article in Soil Ecology Letters

  13. The preservation of ancient DNA in archaeological fish bone

    Ferrari, G., Cuevas, A., Gondek-Wyrozemska, A. T., Ballantyne, R., Kersten, O., Pálsdóttir, A. H., van der Jagt, I., Hufthammer, A. K., Ystgaard, I., Wickler, S., Bigelow, G. F., Harland, J., Nicholson, R., Orton, D., Clavel, B., Boessenkool, S., Barrett, J. H. & Star, B., 9 Jan 2021, (E-pub ahead of print)

    Article in Journal of archaeological science

  14. The kinesin of the flagellum attachment zone in Leishmania is required for cell morphogenesis, cell division and virulence in the mammalian host

    Corrales, R. M., Vaselek, S., Neish, R., Berry, L., Brunet, C., Crobu, L., Kuk, N., Mateos-Langerak, J., Robinson, D. R., Volf, P., Mottram, J. C., Sterkers, Y. & Bastien, P., 18 Jun 2021, (E-pub ahead of print)

    Article in PLOS PATHOGENS

  15. The impact of intra-specific diversity in the rhizobia-legume symbiosis

    Fields, B., Moffat, E. K., Friman, V-P. & Harrison, E., 23 Mar 2021, (Accepted/In press)

    Article in Microbiology

  16. The impact of Endogenous Avian Leukosis Viruses (ALVE) on production traits in elite layer lines

    Fulton, J. E., Mason, A. S., Wolc, A., Arango, J., Settar, P., Lund, A. R. & Burt, D. W., 26 Feb 2021, (Accepted/In press)

    Article in Poultry Science

  17. The genome of the zoonotic malaria parasite Plasmodium simium reveals adaptations to host switching

    Mourier, T., de Alvarenga, D. A. M., Kaushik, A., de Pina-Costa, A., Douvropoulou, O., Guan, Q., Guzmán-Vega, F. J., Forrester, S., de Abreu, F. V. S., Júnior, C. B., de Souza Junior, J. C., Moreira, S. B., Hirano, Z. M. B., Pissinatti, A., Ferreira-da-Cruz, M. D. F., de Oliveira, R. L., Arold, S. T., Jeffares, D. C., Brasil, P., de Brito, C. F. A. & 3 others, Culleton, R., Daniel-Ribeiro, C. T. & Pain, A., 1 Oct 2021

    Article in BMC Biology

  18. The Rpd3-complex regulates expression of multiple cell surface recycling factors in yeast

    Amoiradaki, K., Bunting, K. R., Paine, K., Ayre, J., Hogg, K., Laidlaw, K. M. E. & MacDonald, C., 19 Nov 2021, (E-pub ahead of print)

    Article in International Journal of Molecular Sciences

  19. The Anaerobic Fungi: Challenges and Opportunities for Industrial Lignocellulosic Biofuel Production

    Saye, L. M. G., Navaratna, T. A., Chong, J. P. J., O'Malley, M. A., Theodorou, M. K. & Reilly, M., 27 Mar 2021

    Article in Microorganisms

  20. Testing the effectiveness of the Forest Integrity Assessment: a field-based tool for estimating the condition of tropical forest

    Suggitt, A., Yeong, K. L., Lindhe, A., Agama, A., Hamer, K. C., Reynolds, G., Hill, J. K. & Lucy, J., 25 Mar 2021, (Accepted/In press)

    Article in Ecological Solutions and Evidence

  21. Tau, XMAP215/Msps and Eb1 co-operate interdependently to regulate microtubule polymerisation and bundle formation in axons

    Hahn, I., Voelzmann, A., Parkin, J., Fülle, J. B., Slater, P. G., Lowery, L. A., Sanchez-Soriano, N. & Prokop, A., 6 Jul 2021

    Article in PLoS Genetics

  22. Targeted therapy for LIMD1-deficient non-small cell lung cancer subtypes

    Davidson, K., Grevitt, P., Contreras-Gerenas, M. F., Bridge, K. S., Hermida, M., Shah, K. M., Mardakheh, F. K., Stubbs, M., Burke, R., Casado, P., Cutillas, P. R., Martin, S. A. & Sharp, T. V., 11 Nov 2021

    Article in Cell Death and Disease

  23. Systematic functional analysis of Leishmania protein kinases identifies regulators of differentiation or survival

    Baker, N., Catta-Preta, C. M. C., Neish, R., Sadlova, J., Powell, B., Alves-Ferreira, E. V. C., Geoghegan, V., Carnielli, J. B. T., Newling, K., Hughes, C., Vojtkova, B., Anand, J., Mihut, A., Walrad, P. B., Wilson, L. G., Pitchford, J. W., Volf, P. & Mottram, J. C., 23 Feb 2021

    Article in Nature Communications

  24. Substrate anchoring and flexibility reduction in CYP153AM.aq leads to highly improved activity towards octanoic acid

    Grogan, G. J., Rowlinson, B., Sharma, M., Zukic, E., Hauer, B., Rapp, L., Marques, S. & Damborsky, J., 24 Feb 2021, (E-pub ahead of print)

    Article in ACS Catalysis

  25. Structural and molecular basis for Cardiovirus 2A protein as a viral gene expression switch

    Hill, C. H., Pekarek, L., Napthine, S., Kibe, A., Firth, A. E., Graham, S. C., Caliskan, N. & Brierley, I., 9 Dec 2021

    Article in Nature Communications

  26. Species Diversity and Phylogenetic Relationships of Olive Lace Bugs (Hemiptera: Tingidae) Found in South Africa

    Hlaka, V., Guilbert, É., Smit, C., van Noort, S., Allsopp, E., Langley, J. & van Asch, B., 15 Sep 2021

    Article in Insects

  27. Spatial integration of transcription and splicing in a dedicated compartment sustains monogenic antigen expression in African trypanosomes

    Faria, J., Luzak, V., Müller, L. S. M., Brink, B. G., Hutchinson, S., Glover, L., Horn, D. & Siegel, T. N., Mar 2021

    Article in Nature Microbiology

  28. Somatic mutation landscapes at single-molecule resolution

    Abascal, F., Harvey, L. M. R., Mitchell, E., Lawson, A. R. J., Lensing, S. V., Ellis, P., Russell, A. J. C., Alcantara, R. E., Baez-Ortega, A., Wang, Y., Kwa, E. J., Lee-Six, H., Cagan, A., Coorens, T. H. H., Chapman, M. S., Olafsson, S., Leonard, S., Jones, D., Machado, H., Davies, M. & 12 others, Øbro, N. F., Mahubani, K., Allinson, K., Gerstung, M., Saeb-Parsy, K., Kent, D. G., Laurenti, E., Stratton, M. R., Rahbari, R., Campbell, P. J., Osborne, R. J. & Martincorena, I., 20 May 2021

    Article in Nature

  29. Soil quality regeneration by grass-clover leys in arable rotations compared to permanent grassland: effects on wheat yield and resilience to drought and flooding

    Berdeni, D., Turner, A., Grayson, R., Llanos, J., Holden, J., Firbank, L., Lappage, M., Hunt, SPF., Chapman, P. J., Hodson, M. E., Helgason, T., Watt, P. & Leake, J., 1 Aug 2021

    Article in Soil and Tillage Research

  30. Single-molecule FRET dynamics of molecular motors in an ABEL Trap

    Dienerowitz, M., Howard, J. A. L., Quinn, S., Dienerowitz, F. & Leake, M. C., 9 Feb 2021, (E-pub ahead of print)

    Article in Methods

  31. Secreted pectin monooxygenases drive plant infection by pathogenic oomycetes

    Sabbadin, F., Urresti, S., Henrissat, B., Avrova, A. O., Welsh, L. R. J., Lindley, P., Csukai, M., Squires, J. N., Walton, P. H., Davies, G. J., Bruce, N. C., Whisson, S. C. & McQueen Mason, S. J., 13 Aug 2021, (E-pub ahead of print)

    Article in Science

  32. Search for in-band transitions in the candidate superdeformed band in Si 28

    Morris, L., Jenkins, D. G., Harakeh, M. N., Isaak, J., Kobayashi, N., Tamii, A., Adachi, S., Adsley, P., Aoi, N., Bracco, A., Brown, A., Carpenter, M. P., Carroll, J. J., Courtin, S., Crespi, F. C. L., Davies, P. J., Fruet, G., Fang, Y. D., Fujita, H., Gey, G. & 22 others, Hoang, T. H., Ichige, N., Ideguchi, E., Inoue, A., Iwamoto, C., Koike, T., Raju, M. K., Liu, M. L., Montanari, D., Von Neumann-Cosel, P., Noji, S., Ong, H. J., Savran, D., Schmitt, J. M., Sullivan, C., Wasilewska, B., Weinert, M., Werner, V., Yamamoto, Y., Zegers, R. G. T., Zhou, X. H. & Zhu, S., 30 Nov 2021

    Article in Physical Review C

  33. Reconstruction of Microbial Haplotypes by Integration of Statistical and Physical Linkage in Scaffolding

    Cao, C., He, J., Mak, L., Perera, D., Kwok, D., Wang, J., Li, M., Mourier, T., Gavriliuc, S., Greenberg, M., Morrissy, A. S., Sycuro, L. K., Yang, G., Jeffares, D. C. & Long, Q., 19 May 2021

    Article in Molecular Biology and Evolution

  34. Rapid transformation of ambient absorbing aerosols from West African biomass burning

    Wu, H., Taylor, J. W., Langridge, J. M., Yu, C., Allan, J. D., Szpek, K., Cotterell, M. I., Williams, P. I., Flynn, M., Barker, P., Fox, C., Allen, G., Lee, J. & Coe, H., 21 Jun 2021

    Article in Atmospheric Chemistry and Physics

  35. Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp

    Farhat, S., Le, P., Kayal, E., Noel, B., Bigeard, E., Corre, E., Maumus, F., Florent, I., Alberti, A., Aury, J-M., Barbeyron, T., Cai, R., Da Silva, C., Istace, B., Labadie, K., Marie, D., Mercier, J., Rukwavu, T., Szymczak, J., Tonon, T. & 7 others, Alves-de-Souza, C., Rouzé, P., Van de Peer, Y., Wincker, P., Rombauts, S., Porcel, B. M. & Guillou, L., 6 Jan 2021

    Article in BMC Biology

  36. Rapid evolution of bacterial mutualism in the plant rhizosphere

    Li, E., de Jonge, R., Liu, C., Jiang, H., Friman, V-P., Pieterse, C. M. J., Bakker, P. A. H. M. & Jousset, A., 24 May 2021, (Accepted/In press)

    Article in Nature Communications

  37. Rapid compensatory evolution can rescue low fitness symbioses following partner-switching

    Sørensen, M. E. S., Wood, A. J., Cameron, D. D. & Brockhurst, M., 12 Jul 2021, (E-pub ahead of print)

    Article in Current Biology

  38. R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements

    Ellis, D. A., Reyes-Martín, F., Rodríguez-López, M., Cotobal, C., Sun, X. M., Saintain, Q., Jeffares, D. C., Marguerat, S., Tallada, V. A. & Bähler, J., 31 Aug 2021

    Article in PLoS Genetics

  39. Proximity to forest mediates trade-offs between yields and biodiversity of birds in oil palm smallholdings

    Hamer, K. C., Sasu, M. A., Ofosuhene, L., Asare, R., Ossom, B., Parr, C. L., Scriven, S. A-L., Asante, W., Addico, R. & Hill, J. K., 18 Jul 2021, (E-pub ahead of print)

    Article in Biotropica

  40. Protein methyltransferase 7 deficiency in Leishmania major increases neutrophil associated pathology in murine model

    Alcoforado Diniz, J., Chaves, M. M., Vaselek, S., Miserani Magalhães, R. D., Ricci-Azevedo, R., de Carvalho, R. V. H., Lorenzon, L. B., Ferreira, T. R., Zamboni, D., Walrad, P. B., Volf, P., Sacks, D. L. & Cruz, A. K., 2 Mar 2021

    Article in PLOS NEGLECTED TROPICAL DISEASES

  41. Protein acetylation in the critical biological processes in protozoan parasites

    Maran, S. R., Fleck, K., Monteiro-Teles, N. M., Isebe, T., Walrad, P., Jeffers, V., Cestari, I., Vasconcelos, E. J. R. & Moretti, N., 1 Sep 2021

    Review article in Trends in parasitology

  42. Presynaptic accumulation of α-synuclein causes synaptopathy and progressive neurodegeneration in Drosophila

    Bridi, J. C., Bereczki, E., Smith, S. K., Pocas, G. M., Kottler, B., Domingos, P. M., Elliott, C., Aarsland, D. & Hirth, F., 22 Mar 2021, (E-pub ahead of print)

    Article in Brain Communications

  43. Plasmid fitness costs are caused by specific genetic conflicts enabling resolution by compensatory mutation

    Hall, J. P. J., Wright, R., Harrison, E., Muddiman, K. J., Wood, A. J., Paterson, S. & Brockhurst, M., 13 Oct 2021

    Article in PLoS Biol.

  44. Pharmacological and nutritional targeting of voltage-gated sodium channels in the treatment of cancers

    Lopez-Charcas, O., Pukkanasut, P., Velu, S. E., Brackenbury, W., Hales, T. G., Besson, P., Gomora, J. C. & Roger, S., 1 Mar 2021, (Accepted/In press)

    Article in iScience

  45. Ozone production and precursor emission from wildfires in Africa

    Lee, J. D., Squires, F. A., Sherwen, T., Wilde, S. E., Cliff, S. J., Carpenter, L. J., Hopkins, J. R., Bauguitte, S. J., Reed, C., Barker, P., Allen, G., Bannan, T. J., Matthews, E., Mehra, A., Percival, C., Heard, D. E., Whalley, L. K., Ronnie, G. V., Seldon, S., Ingham, T. & 4 others, Keller, C. A., Knowland, K. E., Nisbet, E. G. & Andrews, S., 23 Sep 2021

    Article in Environmental Science: Atmospheres

  46. No evidence for basigin/CD147 as a direct SARS-CoV-2 spike binding receptor

    Shilts, J., Crozier, T. W. M., Greenwood, E. J. D., Lehner, P. J. & Wright, G. J., 11 Jan 2021

    Article in Scientific Reports

  47. Nest choice in arboreal ants is an emergent consequence of network creation under spatial constraints

    Chang, J., Powell, S., Robinson, E. J. H. & Donaldson-Matasci, M. C., 24 Apr 2021, (E-pub ahead of print)

    Article in Swarm Intelligence

  48. Multi-omics Study of Planobispora rosea, Producer of the Thiopeptide Antibiotic GE2270A

    Del Carratore, F., Iorio, M., Pérez-Bonilla, M., Schmidt, K., Pérez-Redondo, R., Sosio, M., Macdonald, S. J., Gyulev, I. S., Tsigkinopoulou, A., Thomas, G. H., Genilloud, O., Rodríguez-García, A., Donadio, S., Breitling, R. & Takano, E., 22 Jun 2021

    Article in mSystems

  49. Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids

    Bayer, P. E., Scheben, A., Golicz, A. A., Yuan, Y., Faure, S., Lee, H., Chawla, H. S., Anderson, R., Bancroft, I., Raman, H., Lim, Y. P., Robbens, S., Jiang, L., Liu, S., Barker, M. S., Schranz, M. E., Wang, X., King, G. J., Pires, J. C., Chalhoub, B. & 3 others, Snowdon, R. J., Batley, J. & Edwards, D., 30 Nov 2021

    Article in Plant biology

  50. Mixture models as a method for comparative sociality: social networks and demographic change in resident killer whales

    Ellis, S., Franks, D. W., Weiss, M., Cant, M. A., Domenici, P., Balcomb, K. C., Ellifrit, D. K. & Croft, D. P., 5 Apr 2021

    Article in Behavioral Ecology and Sociobiology

  51. Mapping and Monitoring Zero-Deforestation Commitments

    Austin, K. G., Heilmayr, R., Benedict, J. J., Burns, D. N., Eggen, M., Grantham, H., Greenbury, A., Hill, J. K., Jenkins, C. N., Luskin, M. S., Manurung, T., Rasmussen, L. V., Rosoman, G., Rudorff, B., Satar, M., Smith, C. & Carlson, K. M., 18 Aug 2021

    Article in BioScience

  52. Livestock manure type affects microbial community composition and assembly during composting

    Wan, J., Wang, X., Yang, T., Wei, Z., Banerjee, S., Friman, V-P., Mei, X., Xu, Y. & Shen, Q., 22 Mar 2021

    Article in Frontiers in Microbiology

  53. Kinship Dynamics: Patterns and Consequences of Changes in Local Relatedness

    Croft, D. P., Weiss, M. N., Nielsen, M. L. K., Grimes, C., Cant, M. A., Ellis, S., Franks, D. W. & Johnstone, R. A., 26 Jul 2021, (Accepted/In press)

    Article in Proceedings of the Royal Society B

  54. Investigating molecular mechanisms of 2A-stimulated ribosomal pausing and frameshifting in Theilovirus

    Hill, C. H., Cook, G. M., Napthine, S., Kibe, A., Brown, K., Caliskan, N., Firth, A. E., Graham, S. C. & Brierley, I., 9 Nov 2021

    Article in Nucleic Acids Research

  55. Introduction of probiotic bacterial consortia promotes plant growth via impacts on the resident rhizosphere microbiome

    Hu, J., Yang, T., Friman, V-P., Kowalchuk, G. A., Hautier, Y., Li, M., Wei, Z., Xu, Y., Shen, Q. & Jousset, A., 21 Sep 2021, (Accepted/In press)

    Article in Proceedings of the Royal Society B

  56. Importance of Angomonas deanei KAP4 for kDNA arrangement, cell division and maintenance of the host-bacterium relationship

    Gonçalves, C. S., Catta-Preta, C. M. C., Repolês, B., Mottram, J. C., de Souza, W., Machado, C. R. & Motta, M. C. M., 13 Apr 2021, (Accepted/In press)

    Article in Scientific Reports

  57. Impact on Arabidopsis growth and stress resistance of depleting the Maf1 repressor of RNA polymerase III

    Blayney, J., Geary, J., Chrisp, R., Violet, J., Barratt, L., Tavukcu, L., Paine, K., Vaistij, F. E., Graham, I. A., Denby, K. & White, B., 15 Dec 2021, (Accepted/In press)

    Article in Gene

  58. Impact and cost-effectiveness of a lethal house lure against malaria transmission in central Côte d'Ivoire: a two-arm, cluster-randomised controlled trial

    Sternberg, E. D., Cook, J., Alou, L. P. A., Assi, S. B., Koffi, A. A., Doudou, D. T., Aoura, C. J., Wolie, R. Z., Oumbouke, W. A., Worrall, E., Kleinschmidt, I., N'Guessan, R. & Thomas, M. B., 27 Feb 2021

    Article in The Lancet

  59. Identification of individual root-knot nematodes using low coverage long-read sequencing

    Sellers, G. S., Jeffares, D. C., Lawson, B., Prior, T. & Lunt, D. H., 1 Dec 2021

    Article in PLOS one

  60. Human erythroid progenitors are directly infected by SARS-CoV-2: Implications for hypoxia and emerging haematopoiesis/erythropoiesis in COVID-19

    Encabo, H. H., Grey, W. G., Garcia-Albornoz, M., Wood, H., Ulferts, R., Aramburu, I. V., Kulasekararaj, A. G., Mufti, G., Papayannopoulos, V., Beale, R. & Bonnet, D., 9 Mar 2021

    Article in Stem Cell Reports

  61. Herbicide selection promotes antibiotic resistance in soil microbiomes

    Liao, H., Li, X., Yang, Q., Bai, Y., Cui, P., Wen, C., Liu, C., Chen, Z., Tang, J., Che, J., Yu, Z., Geisen, S., Zhou, S., Friman, V-P. & Zhu, Y-G., 16 Feb 2021, (E-pub ahead of print)

    Article in Molecular Biology and Evolution

  62. Hematopoietic stem cells retain functional potential and molecular identity in hibernation cultures

    Oedekoven, C. A., Belmonte, M., Bode, D., Hamey, F. K., Shepherd, M. S., Che, J. L. C., Boyd, G., McDonald, C., Belluschi, S., Diamanti, E., Bastos, H. P., Bridge, K. S., Göttgens, B., Laurenti, E. & Kent, D. G., 8 Jun 2021

    Article in Stem Cell Reports

  63. Glial Nrf2 signaling mediates the neuroprotection exerted by Gastrodia elata Blume in Lrrk2-G2019S Parkinson's disease

    Lin, Y-E., Lin, C-H., Ho, E-P., Ke, Y-C., Petridi, S., Elliott, C., Sheen, L-Y. & Chien, C-T., 15 Nov 2021, (E-pub ahead of print)

    Article in eLife

  64. Genome structural evolution in Brassica crops

    He, Z., Ji, R., Havlickova, L., Wang, L., Li, Y., Lee, H. T., Song, J., Koh, C., Yang, J., Zhang, M., Parkin, I. A. P., Wang, X., Edwards, D., King, G. J., Zou, J., Liu, K., Snowdon, R. J., Banga, S. S., Machackova, I. & Bancroft, I., 27 May 2021

    Article in Nature Plants

  65. Field trial demonstrating phytoremediation of the military explosive RDX using XplAB-expressing switchgrass in-the-field

    Cary, T. J., Rylott, L., Zhang, L., Routsong, R., Palazzo, A. J., Strand, S. E. & Bruce, N. C., 3 May 2021, (E-pub ahead of print)

    Article in Nature Biotechnology

  66. Fast acting allosteric phosphofructokinase inhibitors block trypanosome glycolysis and cure acute African trypanosomiasis in mice

    McNae, I. W., Kinkead, J., Malik, D., Yen, L-H., Walker, M. K., Swain, C., Webster, S. P., Gray, N., Fernandes, P. M., Myburgh, E., Blackburn, E. A., Ritchie, R., Austin, C., Wear, M. A., Highton, A. J., Keats, A. J., Vong, A., Dornan, J., Mottram, J. C., Michels, P. A. M. & 2 others, Pettit, S. & Walkinshaw, M. D., 16 Feb 2021

    Article in Nature Communications

  67. Facility level measurement of offshore oil and gas installations from a medium-sized airborne platform: method development for quantification and source identification of methane emissions

    France, J. L., Bateson, P., Dominutti, P., Allen, G., Andrews, S., Bauguitte, S., Coleman, M., Lachlan-Cope, T., Fisher, R. E., Huang, L., Jones, A. E., Lee, J., Lowry, D., Pitt, J., Purvis, R., Pyle, J., Shaw, J., Warwick, N., Weiss, A., Wilde, S. & 2 others, Witherstone, J. & Young, S., 5 Jan 2021

    Article in Atmospheric Measurement Techniques

  68. FTIR Screening to Elucidate Compositional Differences in Maize Recombinant Inbred Lines with ContrastingSaccharification Efficiency Yields

    López-Malvar, A., Santiago, R., Martin, D., Pereira dos Santos, I., Batista de Carvalho, L. A. E., Faas, L., Gomez, L. D. & da Costa, R. M. F., 2 Jun 2021

    Article in Agronomy

  69. Exploring the potential for ‘Gene Conservation Units’ to conserve genetic diversity in wild populations

    Minter, M., O'Brien, D., Cottrell, J., Ennos, R., Hill, J. K. & Hall, J., 7 Mar 2021, (Accepted/In press)

    Article in Ecological Solutions and Evidence

  70. Evolution of a virus-like architecture and packaging mechanism in a repurposed bacterial protein

    Tetter, S., Terasaka, N., Steinauer, A., Clark, S., Scott, A. J. P., Patel, N., Leibundgut, M., Wroblewski, E., Ban, N., Stockley, P. G., Twarock, R., Hilvert, D. & Bingham, R. J., 11 Jun 2021

    Article in Science

  71. Evaluation of the Stability of Bacteriophages in Different Solutions Suitable for the Production of Magistral Preparations in Belgium

    Duyvejonck, H., Merabishvili, M., Vaneechoutte, M., de Soir, S., Wright, R., Friman, V-P., Verbeken, G., De Vos, D., Pirnay, J-P., Van Mechelen, E. & Vermeulen, S. J. T., 8 May 2021

    Article in Viruses

  72. Estimating the dwarfing rate of an extinct Sicilian elephant

    Baleka, S., Herridge, V. L., Catalano, G., Lister, A. M., Dickinson, M. R., Di Patti, C., Barlow, A., Penkman, K. E. H., Hofreiter, M. & Paijmans, J. L. A., 23 Aug 2021

    Article in Current Biology

  73. Epitope Mapping of Exposed Tegument and Alimentary Tract Proteins Identifies Putative Antigenic Targets of the Attenuated Schistosome Vaccine

    Farias, L. P., Vance, G. M., Coulson, P. S., Vitoriano-Souza, J., Neto, A. P. D. S., Wangwiwatsin, A., Neves, L. X., Castro-Borges, W., McNicholas, S., Wilson, K. S., Leite, L. C. C. & Wilson, R. A., 3 Mar 2021

    Article in Frontiers in immunology

  74. Elucidating the multifunctional role of the cell wall components in the maize exploitation

    Gomez, L. D., Ana, LM., Malvar, R. A., Souto, X. C., Simister, R., Encina, A., Barros‑Rios, J., Pereira‑Crespo, S. & Santiago, R., 4 Jun 2021

    Article in BMC Plant Biology

  75. Elucidating the Role of Topological Constraint on the Structure of Overstretched DNA using Fluorescence Polarization Microscopy

    Backer, A. S., King, G. A., Biebricher, A. S., Shepherd, J., Noy, A., Leake, M. C., Heller, I., Wuite, G. J. L. & Peterman, E. J. G., 26 Jul 2021, (E-pub ahead of print)

    Article in The Journal of Physical Chemistry

  76. Elevational specialization and the monitoring of the effects of climate change in insects: beetles in a Brazilian rainforest mountain

    Colares, C., Roza, A. S., Mermudes, J. R. M., da Silveira, L. F. L., Khattar, G., Mayhew, P. J., Monteiro, R. F., Nunes, M. F. S. Q. C. & Macedo, M. V., Jan 2021

    Article in Ecological Indicators

  77. Effectiveness of glass beads for plating cell cultures

    Prusokas, A., Hawkins, M., Nieduszynski, C. A. & Retkute, R., 17 May 2021

    Article in Physical Review E

  78. Early reduction in PD-L1 expression predicts faster treatment response in human cutaneous leishmaniasis

    Dey, N. S., Senaratne, S., Somaratne, V., Madarasinghe, N. P., Seneviratne, B., Forrester, S., Montes de Oca, M., Reis, L. C., Moulik, S., Walrad, P. B., Chatterjee, M., Goto, H., Wickremasinghe, R., Lagos, D., Kaye, P. M. & Ranasinghe, S., 5 Oct 2021, (E-pub ahead of print)

    Article in Journal of Clinical Investigation

  79. Divergent cytochrome c maturation system in kinetoplastid protists

    Belbelazi, A., Neish, R., Carr, M., Mottram, J. C. & Ginger, M. L., 30 Mar 2021, (Accepted/In press)

    Article in MBio

  80. Dissecting pathways to thrombocytopenia in a mouse model of visceral leishmaniasis

    Rani, G. F., Preham, O., Ashwin, H., Brown, N., Hitchcock, I. S. & Kaye, P. M., 12 Mar 2021, (E-pub ahead of print)

    Article in Blood Advances

  81. Dimerization drives proper folding of human alanine: glyoxylate aminotransferase but is dispensable for peroxisomal targeting

    Dindo, M., Ambrosini, G., Oppici, E., Pey, A. L., O'Toole, P. J., Marrison, J., Morrison, I. E. G., Butturini, E., Grottelli, S., Costantini, C. & Cellini, B., 2 Apr 2021, (Accepted/In press)

    Article in Journal of Personalized Medicine

  82. Design of experiments driven optimization of alkaline pretreatment and saccharification for sugarcane bagasse

    Mota, T. R., Oliveira, D. M., Simister, R., Whitehead, C. B., Lanot, A., Dos Santos, W. D., Rezende, C. A., McQueen Mason, S. J. & Gomez, L. D., 1 Feb 2021

    Article in BIORESOURCE TECHNOLOGY

  83. Cyanidiophyceae (Rhodophyta) tolerance to precious metals: metabolic response to Cl4K2Pd and AuCl4K

    Sirakov, M., Palmieri, M. P., Iovinella, M., Davis, S. J., Petriccione, M., Di Cicco, M. R., De Stefano, M. & Ciniglia, C., 29 Oct 2021, (Accepted/In press)

    Article in Plants

  84. Cropland trees need to be included for accurate model simulations of land-atmosphere heat fluxes, temperature, boundary layer height, and ozone

    Mishra, A. K., Sinha, B., Kumar, R., Barth, M., Hakkim, H., Kumar, V., Kumar, A., Datta, S., Guenther, A. & Sinha, V., 10 Jan 2021

    Article in Science of the Total Environment

  85. Control of oviductal fluid flow by the G-protein coupled receptor Adgrd1 is essential for murine embryo transit

    Bianchi, E., Sun, Y., Almansa-Ordonez, A., Woods, M., Goulding, D., Martinez-Martin, N. & Wright, G. J., 29 Jan 2021, (Accepted/In press)

    Article in Nature Communications

  86. Complex basis of hybrid female sterility and Haldane's rule in Heliconius butterflies: Z-linkage and epistasis

    Rosser, N. S., Edelman, N., Queste, L., Nelson, M., Seixas, F., Dasmahapatra, K. K. & Mallet, J., 14 Nov 2021, (E-pub ahead of print)

    Article in Molecular Ecology

  87. Chromosome segregation in Archaea: SegA– and SegB–DNA complex structures provide insights into segrosome assembly

    Yen, C-Y., Lin, M-G., Chen, B-W., Ng, I. W. L., Read, N., Kabli, A., Wu, C-T., Shen, Y-Y., Chen, C-H., Barilla, D., Sun, Y-J. & Hsiao, C-D., 29 Nov 2021

    Article in Nucleic Acids Research

  88. Characterization of a new Leishmania major strain for use in a controlled human infection model

    Ashwin, H., Sadlova, J., Vojtkova, B., Becvar, T., Lypaczewski, P., Schwartz, E., Greensted, E., Van Bocxlaer, K., Pasin, M., Lipinski, K. S., Parkash, V., Matlashewski, G., Layton, A. M., Lacey, C. J. N., Jaffe, C. L., Volf, P. & Kaye, P., 11 Jan 2021

    Article in Nature Communications

  89. Characterisation of the enzyme transport path between shipworms and their bacterial symbionts

    Pesante, G., Sabbadin, F., Elias, L., Steele-King, C., Shipway, J. R., Dowle, A., Li, Y., Busse-Wicher, M., Dupree, P., Besser, K., Cragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 1 Nov 2021

    Article in BMC Biology

  90. Characterisation of a laser plasma betatron source for high resolution x-ray imaging

    Finlay, O. J., Gruse, J. N., Thornton, C., Allott, R., Armstrong, C. D., Baird, C. D., Bourgeois, N., Brenner, C., Cipiccia, S., Cole, J. M., Gregory, C., Jamison, S., Katzir, Y., Lopes, N. C., Mangles, S. P. D., Murphy, C. D., Najmudin, Z., Neely, D., Pickard, L. R., Potter, K. D. & 8 others, Rajeev, P. P., Rusby, D., Selwood, M. P., Symes, D. R., Underwood, C. I. D., Wood, J. C., Thomas, A. G. R. & Streeter, M. J. V., 1 Aug 2021

    Article in Plasma Physics and Controlled Fusion

  91. Cell-Free Total Biosynthesis of Plant Terpene Natural Products Using an Orthogonal Cofactor Regeneration System

    Bat-Erdene, U., Billingsley, J. M., Turner, W. C., Lichman, B. R., Ippoliti, F. M., Garg, N. K., O'Connor, S. E. & Tang, Y., 6 Aug 2021

    Article in ACS Catalysis

  92. Candidates for Balancing Selection in Leishmania donovani Complex Parasites

    Grace, C. A., Forrester, S. J., Costa Silva, V., Carvalho, K. S. S., Kilford, H., Chew, Y. P., James, S., Costa, D. L., Mottram, J. C., Costa, C. H. N. & Jeffares, D., 22 Nov 2021, (Accepted/In press)

    Article in Molecular Biology and Evolution

  93. Bone Marrow Remodelling Supports Hematopoiesis in Response to Immune Thrombocytopenia Progression

    Herd, O., Rani, G. F., Hewitson, J. P., Hogg, K., Stone, A., Cooper, N., Kent, D. G., Genever, P. & Hitchcock, I. S., 24 Aug 2021, (E-pub ahead of print)

    Article in Blood Advances

  94. Biorefining Potential of Wild-Grown Arundo donax, Cortaderia selloana and Phragmites australis and the Feasibility of White-Rot Fungi-Mediated Pretreatments

    da Costa, R. M. F., Winters, A., Hauck, B., Martin, D., Bosch, M., Simister, R., Gomez, L. D., Batista de Carvalho, L. A. E. & Canhoto, J. M., 2 Jul 2021

    Article in Frontiers in Plant Science

  95. Autophagy inhibition rescues structural and functional defects caused by the loss of mitochondrial chaperone Hsc70-5 in Drosophila

    Zhu, J., Hannan, S. B., Dräger, N. M., Vereshchagina, N., Krahl, A-C., Fu, Y., Elliott, C., Han, Z., Jahn, T. R. & Rasse, T. M., 25 Jan 2021, (E-pub ahead of print)

    Article in Autophagy

  96. Arable fields as potential reservoirs of biodiversity: earthworm populations increase in new leys

    Prendergast-Miller, M., Jones, D., Berdeni, D., Bird, S., Chapman, P. J., Firbank, L., Grayson, R., Helgason, T., Holden, J., Lappage, M., Leake, J. & Hodson, M. E., 1 Oct 2021

    Article in Science of the Total Environment

  97. Anthropogenic pressures coincide with Neotropical biodiversity hotspots in a flagship butterfly group

    Doré, M., Willmott, K., Leroy, B., Chazot, N., Mallet, J., Freitas, A. V. L., Hall, J. P. W., Lamas, G., Dasmahapatra, K. K., Fontaine, C. & Elias, M., 9 Dec 2021, (E-pub ahead of print)

    Article in Diversity and Distributions

  98. An invariant Trypanosoma vivax vaccine antigen inducing protective immunity

    Autheman, D., Crosnier, C., Clare, S., Goulding, D. A., Brandt, C., Harcourt, K., Tolley, C., Galaway, F., Khushu, M., Ong, H., Romero-Ramirez, A., Duffy, C. W., Jackson, A. P. & Wright, G. J., 1 Jul 2021

    Article in Nature

  99. An early-morning gene network controlled by phytochromes and cryptochromes regulates photomorphogenesis pathways in Arabidopsis

    Balcerowicz, M., Mahjoub, M., Nguyen, D., Lan, H., Stoeckle, D., Conde, S., Jaeger, K., Wigge, P. A. & Ezer, D., 7 Jun 2021

    Article in Molecular plant

  100. An alkynylpyrimidine-based covalent inhibitor that targets a unique cysteine in NF-κB-inducing kinase (NIK)

    Al-Khawaldeh, I., Alyassiri, M., Aldred, G., Basmadjian, C., Bordoni, C., Harnor, S. J., Heptinstall, A. B., Hobson, S., Jennings, C., Khalifa, S., Lebraud, H., Martin, M. P., Miller, D. C., Shrives, H., De Souza, J., Stewart, H., Temple, M. J., Thomas, H., Totobenazara, J., Tucker, J. A. & 12 others, Tudhope, S., Wang, L-Z., Bronowska, A., Cano, C., Endicott, J. A., Golding, B., Hardcastle, I. R., Hickson, I., Wedge, S., Willmore, E., Noble, M. E. M. & Waring, M. J., 2 Jul 2021, (E-pub ahead of print)

    Article in JOURNAL OF MEDICINAL CHEMISTRY

  101. Airborne and indigenous microbiomes co-drive the rebound of antibiotic resistome during compost storage

    Liao, H., Bai, Y., Liu, C., Wen, C., Yang, Q., Chen, Z., Banerjee, S., Zhou, S. & Friman, V-P., 14 Jul 2021, (E-pub ahead of print)

    Article in Environmental Microbiology

  102. Age and sex influence social interactions, but not associations, within a killer whale pod

    Weiss, M. N., Franks, D. W., Giles, D. A., Youngstrom, S., Wasser, S. K., Balcomb, K. C., Ellifrit, D. K., Domenici, P., Cant, M. A., Ellis, S., Nielsen, M. L. K., Grimes, C. & Croft, D. P., 16 Jun 2021

    Article in PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

  103. Accuracy and Power Analysis of Social Networks Built From Count Data

    Hart, J. D. A., Franks, D. W., Brent, L. J. N. & Weiss, M. N., 16 Oct 2021, (E-pub ahead of print)

    Article in Methods in ecology and evolution

  104. A recombineering pipeline to clone large and complex genes in Chlamydomonas

    Emrich-Mills, T. Z., Yates, G., Barrett, J., Girr, P., Grouneva, I., Lau, C. S., Walker, C. E., Kwok, T. K., Davey, J. W., Johnson, M. P. & Mackinder, L., 2 Feb 2021, (E-pub ahead of print)

    Article in The Plant Cell

  105. A proteome-wide genetic investigation identifies several SARS-CoV-2-exploited host targets of clinical relevance

    Anisul, M., Shilts, J., Schwartzentruber, J., Hayhurst, J., Buniello, A., Mohammed, E. S. E., Zheng, J., Holmes, M., Ochoa, D., Carmona, M., Maranville, J., Gaunt, T. R., Emilsson, V., Gudnason, V., McDonagh, E. M., Wright, G. J., Ghoussaini, M. & Dunham, I., 17 Aug 2021

    Article in eLife

  106. A novel protein from Ectocarpus sp. improves salinity and high temperature stress tolerance in Arabidopsis thaliana

    Rathor, P., Borza, T., Stone, S., Tonon, T., Yurgel, S., Potin, P. & Prithiviraj, B., 13 Feb 2021, (Accepted/In press)

    Article in International Journal of Molecular Sciences

  107. A non-destructive sugar-feeding assay for parasite detection and estimating the extrinsic incubation period of Plasmodium falciparum in individual mosquito vectors

    Guissou, E., Waite, J. L., Jones, M., Bell, A. S., Suh, E., Yameogo, K. B., Djègbè, N., Da, D. F., Hien, D. F. D. S., Yerbanga, R. S., Ouedraogo, A. G., Dabiré, K. R., Cohuet, A., Thomas, M. B. & Lefèvre, T., 29 Apr 2021

    Article in Scientific Reports

  108. A low-complexity region in the YTH domain protein Mmi1 enhances RNA binding

    Stowell, J. A. W., Wagstaff, J. L., Hill, C. H., Yu, M., McLaughlin, S. H., Freund, S. M. V. & Passmore, L. A., 4 Jan 2021

    Article in The Journal of biological chemistry

  109. A long postreproductive life span is a shared trait among genetically distinct killer whale populations

    Nielsen, M., Ellis, S., Towers, J., Doniol-Valcroze, T., Franks, D. W., Cant, M., Weiss, M., Johnstone, R. A., Balcomb, K. C., Ellifrit, D. K. & Croft, D., 16 Jun 2021, (E-pub ahead of print)

    Article in Ecology and Evolution

  110. A chromosome-level Amaranthus cruentus genome assembly highlights gene family evolution and biosynthetic gene clusters that may underpin the nutritional value of this traditional crop

    Ma, X., Vaistij, F. E., Li, Y., Jansen van Rensburg, W. S., Harvey, S. E., Bairu, M. W., Venter, S. L., Mavengahama, S., Ning, Z., Graham, I. A., Van Deynze, A., Van de Peer, Y. & Denby, K., 7 May 2021, (E-pub ahead of print)

    Article in The Plant journal

  111. A CLK1-KKT2 signaling pathway regulating kinetochore assembly in Trypanosoma brucei.

    Saldivia, M., Wollman, A. J. M., Carnielli, J. B. T., Jones, N. G., Leake, M. C., Bower-Lepts, C., Rao, S. P. S. & Mottram, J. C., 7 May 2021, (Accepted/In press)

    Article in MBio

  112. 17-AAG-induced activation of the autophagic pathway in Leishmania is associated with parasite death

    Petersen, A. L. D. O. A., Cull, B., Simões Dias, B. R., Palma, L. C., da Silva Luz, Y., de Menezes, J. P. B., Mottram, J. C. & Veras, P. S. T., 19 May 2021, (E-pub ahead of print)

    Article in Microorganisms