Search research publications and outputs

  1. Article › Research › Peer-reviewed
  2. 17-AAG-induced activation of the autophagic pathway in Leishmania is associated with parasite death

    Petersen, A. L. D. O. A., Cull, B., Simões Dias, B. R., Palma, L. C., da Silva Luz, Y., de Menezes, J. P. B., Mottram, J. C. & Veras, P. S. T., 19 May 2021, (E-pub ahead of print)

    Article in Microorganisms

  3. A CLK1-KKT2 signaling pathway regulating kinetochore assembly in Trypanosoma brucei.

    Saldivia, M., Wollman, A. J. M., Carnielli, J. B. T., Jones, N. G., Leake, M. C., Bower-Lepts, C., Rao, S. P. S. & Mottram, J. C., 7 May 2021, (Accepted/In press)

    Article in MBio

  4. A chromosome-level Amaranthus cruentus genome assembly highlights gene family evolution and biosynthetic gene clusters that may underpin the nutritional value of this traditional crop

    Ma, X., Vaistij, F. E., Li, Y., Jansen van Rensburg, W. S., Harvey, S. E., Bairu, M. W., Venter, S. L., Mavengahama, S., Ning, Z., Graham, I. A., Van Deynze, A., Van de Peer, Y. & Denby, K., 7 May 2021, (E-pub ahead of print)

    Article in The Plant journal

  5. A long postreproductive life span is a shared trait among genetically distinct killer whale populations

    Nielsen, M., Ellis, S., Towers, J., Doniol-Valcroze, T., Franks, D. W., Cant, M., Weiss, M., Johnstone, R. A., Balcomb, K. C., Ellifrit, D. K. & Croft, D., 16 Jun 2021, (E-pub ahead of print)

    Article in Ecology and Evolution

  6. A non-destructive sugar-feeding assay for parasite detection and estimating the extrinsic incubation period of Plasmodium falciparum in individual mosquito vectors

    Guissou, E., Waite, J. L., Jones, M., Bell, A. S., Suh, E., Yameogo, K. B., Djègbè, N., Da, D. F., Hien, D. F. D. S., Yerbanga, R. S., Ouedraogo, A. G., Dabiré, K. R., Cohuet, A., Thomas, M. B. & Lefèvre, T., 29 Apr 2021

    Article in Scientific Reports

  7. A novel protein from Ectocarpus sp. improves salinity and high temperature stress tolerance in Arabidopsis thaliana

    Rathor, P., Borza, T., Stone, S., Tonon, T., Yurgel, S., Potin, P. & Prithiviraj, B., 13 Feb 2021, (Accepted/In press)

    Article in International Journal of Molecular Sciences

  8. A recombineering pipeline to clone large and complex genes in Chlamydomonas

    Emrich-Mills, T. Z., Yates, G., Barrett, J., Girr, P., Grouneva, I., Lau, C. S., Walker, C. E., Kwok, T. K., Davey, J. W., Johnson, M. P. & Mackinder, L., 2 Feb 2021, (E-pub ahead of print)

    Article in The Plant Cell

  9. Accuracy and Power Analysis of Social Networks Built From Count Data

    Hart, J. D. A., Franks, D. W., Brent, L. J. N. & Weiss, M. N., 16 Oct 2021, (E-pub ahead of print)

    Article in Methods in ecology and evolution

  10. Age and sex influence social interactions, but not associations, within a killer whale pod

    Weiss, M. N., Franks, D. W., Giles, D. A., Youngstrom, S., Wasser, S. K., Balcomb, K. C., Ellifrit, D. K., Domenici, P., Cant, M. A., Ellis, S., Nielsen, M. L. K., Grimes, C. & Croft, D. P., 16 Jun 2021

    Article in PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

  11. Airborne and indigenous microbiomes co-drive the rebound of antibiotic resistome during compost storage

    Liao, H., Bai, Y., Liu, C., Wen, C., Yang, Q., Chen, Z., Banerjee, S., Zhou, S. & Friman, V-P., 14 Jul 2021, (E-pub ahead of print)

    Article in Environmental Microbiology

  12. An alkynylpyrimidine-based covalent inhibitor that targets a unique cysteine in NF-κB-inducing kinase (NIK)

    Al-Khawaldeh, I., Alyassiri, M., Aldred, G., Basmadjian, C., Bordoni, C., Harnor, S. J., Heptinstall, A. B., Hobson, S., Jennings, C., Khalifa, S., Lebraud, H., Martin, M. P., Miller, D. C., Shrives, H., De Souza, J., Stewart, H., Temple, M. J., Thomas, H., Totobenazara, J., Tucker, J. A. & 12 others, Tudhope, S., Wang, L-Z., Bronowska, A., Cano, C., Endicott, J. A., Golding, B., Hardcastle, I. R., Hickson, I., Wedge, S., Willmore, E., Noble, M. E. M. & Waring, M. J., 2 Jul 2021, (E-pub ahead of print)

    Article in JOURNAL OF MEDICINAL CHEMISTRY

  13. An early-morning gene network controlled by phytochromes and cryptochromes regulates photomorphogenesis pathways in Arabidopsis

    Balcerowicz, M., Mahjoub, M., Nguyen, D., Lan, H., Stoeckle, D., Conde, S., Jaeger, K., Wigge, P. A. & Ezer, D., 7 Jun 2021

    Article in Molecular plant

  14. An invariant Trypanosoma vivax vaccine antigen inducing protective immunity

    Autheman, D., Crosnier, C., Clare, S., Goulding, D. A., Brandt, C., Harcourt, K., Tolley, C., Galaway, F., Khushu, M., Ong, H., Romero-Ramirez, A., Duffy, C. W., Jackson, A. P. & Wright, G. J., 1 Jul 2021

    Article in Nature

  15. Arable fields as potential reservoirs of biodiversity: earthworm populations increase in new leys

    Prendergast-Miller, M., Jones, D., Berdeni, D., Bird, S., Chapman, P. J., Firbank, L., Grayson, R., Helgason, T., Holden, J., Lappage, M., Leake, J. & Hodson, M. E., 1 Oct 2021

    Article in Science of the Total Environment

  16. Autophagy inhibition rescues structural and functional defects caused by the loss of mitochondrial chaperone Hsc70-5 in Drosophila

    Zhu, J., Hannan, S. B., Dräger, N. M., Vereshchagina, N., Krahl, A-C., Fu, Y., Elliott, C., Han, Z., Jahn, T. R. & Rasse, T. M., 25 Jan 2021, (E-pub ahead of print)

    Article in Autophagy

  17. Biorefining Potential of Wild-Grown Arundo donax, Cortaderia selloana and Phragmites australis and the Feasibility of White-Rot Fungi-Mediated Pretreatments

    da Costa, R. M. F., Winters, A., Hauck, B., Martin, D., Bosch, M., Simister, R., Gomez, L. D., Batista de Carvalho, L. A. E. & Canhoto, J. M., 2 Jul 2021

    Article in Frontiers in Plant Science

  18. Bone Marrow Remodelling Supports Hematopoiesis in Response to Immune Thrombocytopenia Progression

    Herd, O., Rani, G. F., Hewitson, J. P., Hogg, K., Stone, A., Cooper, N., Kent, D. G., Genever, P. & Hitchcock, I. S., 24 Aug 2021, (E-pub ahead of print)

    Article in Blood Advances

  19. Cell-Free Total Biosynthesis of Plant Terpene Natural Products Using an Orthogonal Cofactor Regeneration System

    Bat-Erdene, U., Billingsley, J. M., Turner, W. C., Lichman, B. R., Ippoliti, F. M., Garg, N. K., O'Connor, S. E. & Tang, Y., 6 Aug 2021

    Article in ACS Catalysis

  20. Characterisation of a laser plasma betatron source for high resolution x-ray imaging

    Finlay, O. J., Gruse, J. N., Thornton, C., Allott, R., Armstrong, C. D., Baird, C. D., Bourgeois, N., Brenner, C., Cipiccia, S., Cole, J. M., Gregory, C., Jamison, S., Katzir, Y., Lopes, N. C., Mangles, S. P. D., Murphy, C. D., Najmudin, Z., Neely, D., Pickard, L. R., Potter, K. D. & 8 others, Rajeev, P. P., Rusby, D., Selwood, M. P., Symes, D. R., Underwood, C. I. D., Wood, J. C., Thomas, A. G. R. & Streeter, M. J. V., Aug 2021

    Article in Plasma Physics and Controlled Fusion

  21. Characterization of a new Leishmania major strain for use in a controlled human infection model

    Ashwin, H., Sadlova, J., Vojtkova, B., Becvar, T., Lypaczewski, P., Schwartz, E., Greensted, E., Van Bocxlaer, K., Pasin, M., Lipinski, K. S., Parkash, V., Matlashewski, G., Layton, A. M., Lacey, C. J. N., Jaffe, C. L., Volf, P. & Kaye, P., 11 Jan 2021

    Article in Nature Communications

  22. Control of oviductal fluid flow by the G-protein coupled receptor Adgrd1 is essential for murine embryo transit

    Bianchi, E., Sun, Y., Almansa-Ordonez, A., Woods, M., Goulding, D., Martinez-Martin, N. & Wright, G. J., 29 Jan 2021, (Accepted/In press)

    Article in Nature Communications

  23. Cyanidiophyceae (Rhodophyta) tolerance to precious metals: metabolic response to Cl4K2Pd and AuCl4K

    Sirakov, M., Palmieri, M. P., Iovinella, M., Davis, S. J., Petriccione, M., Di Cicco, M. R., De Stefano, M. & Ciniglia, C., 29 Oct 2021, (Accepted/In press)

    Article in Plants

  24. Design of experiments driven optimization of alkaline pretreatment and saccharification for sugarcane bagasse

    Mota, T. R., Oliveira, D. M., Simister, R., Whitehead, C. B., Lanot, A., Dos Santos, W. D., Rezende, C. A., McQueen Mason, S. J. & Gomez, L. D., 1 Feb 2021

    Article in BIORESOURCE TECHNOLOGY

  25. Dimerization drives proper folding of human alanine: glyoxylate aminotransferase but is dispensable for peroxisomal targeting

    Dindo, M., Ambrosini, G., Oppici, E., Pey, A. L., O'Toole, P. J., Marrison, J., Morrison, I. E. G., Butturini, E., Grottelli, S., Costantini, C. & Cellini, B., 2 Apr 2021, (Accepted/In press)

    Article in Journal of Personalized Medicine

  26. Divergent cytochrome c maturation system in kinetoplastid protists

    Belbelazi, A., Neish, R., Carr, M., Mottram, J. C. & Ginger, M. L., 30 Mar 2021, (Accepted/In press)

    Article in MBio

  27. Early reduction in PD-L1 expression predicts faster treatment response in human cutaneous leishmaniasis

    Dey, N. S., Senaratne, S., Somaratne, V., Madarasinghe, N. P., Seneviratne, B., Forrester, S., Montes de Oca, M., Reis, L. C., Moulik, S., Walrad, P. B., Chatterjee, M., Goto, H., Wickremasinghe, R., Lagos, D., Kaye, P. M. & Ranasinghe, S., 5 Oct 2021, (E-pub ahead of print)

    Article in Journal of Clinical Investigation

  28. Elevational specialization and the monitoring of the effects of climate change in insects: beetles in a Brazilian rainforest mountain

    Colares, C., Roza, A. S., Mermudes, J. R. M., da Silveira, L. F. L., Khattar, G., Mayhew, P. J., Monteiro, R. F., Nunes, M. F. S. Q. C. & Macedo, M. V., Jan 2021

    Article in Ecological Indicators

  29. Elucidating the Role of Topological Constraint on the Structure of Overstretched DNA using Fluorescence Polarization Microscopy

    Backer, A. S., King, G. A., Biebricher, A. S., Shepherd, J., Noy, A., Leake, M. C., Heller, I., Wuite, G. J. L. & Peterman, E. J. G., 26 Jul 2021, (E-pub ahead of print)

    Article in The Journal of Physical Chemistry

  30. Elucidating the multifunctional role of the cell wall components in the maize exploitation

    Gomez, L. D., Ana, LM., Malvar, R. A., Souto, X. C., Simister, R., Encina, A., Barros‑Rios, J., Pereira‑Crespo, S. & Santiago, R., 4 Jun 2021

    Article in BMC Plant Biology

  31. Epitope Mapping of Exposed Tegument and Alimentary Tract Proteins Identifies Putative Antigenic Targets of the Attenuated Schistosome Vaccine

    Farias, L. P., Vance, G. M., Coulson, P. S., Vitoriano-Souza, J., Neto, A. P. D. S., Wangwiwatsin, A., Neves, L. X., Castro-Borges, W., McNicholas, S., Wilson, K. S., Leite, L. C. C. & Wilson, R. A., 3 Mar 2021

    Article in Frontiers in immunology

  32. Estimating the dwarfing rate of an extinct Sicilian elephant

    Baleka, S., Herridge, V. L., Catalano, G., Lister, A. M., Dickinson, M. R., Di Patti, C., Barlow, A., Penkman, K. E. H., Hofreiter, M. & Paijmans, J. L. A., 23 Aug 2021

    Article in Current Biology

  33. Evolution of a virus-like architecture and packaging mechanism in a repurposed bacterial protein

    Tetter, S., Terasaka, N., Steinauer, A., Clark, S., Scott, A. J. P., Patel, N., Leibundgut, M., Wroblewski, E., Ban, N., Stockley, P. G., Twarock, R., Hilvert, D. & Bingham, R. J., 11 Jun 2021

    Article in Science

  34. Exploring the potential for ‘Gene Conservation Units’ to conserve genetic diversity in wild populations

    Minter, M., O'Brien, D., Cottrell, J., Ennos, R., Hill, J. K. & Hall, J., 7 Mar 2021, (Accepted/In press)

    Article in Ecological Solutions and Evidence

  35. FTIR Screening to Elucidate Compositional Differences in Maize Recombinant Inbred Lines with ContrastingSaccharification Efficiency Yields

    López-Malvar, A., Santiago, R., Martin, D., Pereira dos Santos, I., Batista de Carvalho, L. A. E., Faas, L., Gomez, L. D. & da Costa, R. M. F., 2 Jun 2021

    Article in Agronomy

  36. Facility level measurement of offshore oil and gas installations from a medium-sized airborne platform: method development for quantification and source identification of methane emissions

    France, J. L., Bateson, P., Dominutti, P., Allen, G., Andrews, S., Bauguitte, S., Coleman, M., Lachlan-Cope, T., Fisher, R. E., Huang, L., Jones, A. E., Lee, J., Lowry, D., Pitt, J., Purvis, R., Pyle, J., Shaw, J., Warwick, N., Weiss, A., Wilde, S. & 2 others, Witherstone, J. & Young, S., 5 Jan 2021

    Article in Atmospheric Measurement Techniques

  37. Fast acting allosteric phosphofructokinase inhibitors block trypanosome glycolysis and cure acute African trypanosomiasis in mice

    McNae, I. W., Kinkead, J., Malik, D., Yen, L-H., Walker, M. K., Swain, C., Webster, S. P., Gray, N., Fernandes, P. M., Myburgh, E., Blackburn, E. A., Ritchie, R., Austin, C., Wear, M. A., Highton, A. J., Keats, A. J., Vong, A., Dornan, J., Mottram, J. C., Michels, P. A. M. & 2 others, Pettit, S. & Walkinshaw, M. D., 16 Feb 2021

    Article in Nature Communications

  38. Field trial demonstrating phytoremediation of the military explosive RDX using XplAB-expressing switchgrass in-the-field

    Cary, T. J., Rylott, L., Zhang, L., Routsong, R., Palazzo, A. J., Strand, S. E. & Bruce, N. C., 3 May 2021, (E-pub ahead of print)

    Article in Nature Biotechnology

  39. Genome structural evolution in Brassica crops

    He, Z., Ji, R., Havlickova, L., Wang, L., Li, Y., Lee, H. T., Song, J., Koh, C., Yang, J., Zhang, M., Parkin, I. A. P., Wang, X., Edwards, D., King, G. J., Zou, J., Liu, K., Snowdon, R. J., Banga, S. S., Machackova, I. & Bancroft, I., 27 May 2021

    Article in Nature Plants

  40. Glial Nrf2 signaling mediates the neuroprotection exerted by Gastrodia elata Blume in Lrrk2-G2019S Parkinson's disease

    Lin, Y-E., Lin, C-H., Ho, E-P., Ke, Y-C., Petridi, S., Elliott, C., Sheen, L-Y. & Chien, C-T., 15 Nov 2021, (E-pub ahead of print)

    Article in eLife

  41. Hematopoietic stem cells retain functional potential and molecular identity in hibernation cultures

    Oedekoven, C. A., Belmonte, M., Bode, D., Hamey, F. K., Shepherd, M. S., Che, J. L. C., Boyd, G., McDonald, C., Belluschi, S., Diamanti, E., Bastos, H. P., Bridge, K. S., Göttgens, B., Laurenti, E. & Kent, D. G., 8 Jun 2021

    Article in Stem Cell Reports

  42. Herbicide selection promotes antibiotic resistance in soil microbiomes

    Liao, H., Li, X., Yang, Q., Bai, Y., Cui, P., Wen, C., Liu, C., Chen, Z., Tang, J., Che, J., Yu, Z., Geisen, S., Zhou, S., Friman, V-P. & Zhu, Y-G., 16 Feb 2021, (E-pub ahead of print)

    Article in Molecular Biology and Evolution

  43. Impact and cost-effectiveness of a lethal house lure against malaria transmission in central Côte d'Ivoire: a two-arm, cluster-randomised controlled trial

    Sternberg, E. D., Cook, J., Alou, L. P. A., Assi, S. B., Koffi, A. A., Doudou, D. T., Aoura, C. J., Wolie, R. Z., Oumbouke, W. A., Worrall, E., Kleinschmidt, I., N'Guessan, R. & Thomas, M. B., 27 Feb 2021

    Article in The Lancet

  44. Importance of Angomonas deanei KAP4 for kDNA arrangement, cell division and maintenance of the host-bacterium relationship

    Gonçalves, C. S., Catta-Preta, C. M. C., Repolês, B., Mottram, J. C., de Souza, W., Machado, C. R. & Motta, M. C. M., 13 Apr 2021, (Accepted/In press)

    Article in Scientific Reports

  45. Introduction of probiotic bacterial consortia promotes plant growth via impacts on the resident rhizosphere microbiome

    Hu, J., Yang, T., Friman, V-P., Kowalchuk, G. A., Hautier, Y., Li, M., Wei, Z., Xu, Y., Shen, Q. & Jousset, A., 21 Sep 2021, (Accepted/In press)

    Article in Proceedings of the Royal Society B

  46. Investigating molecular mechanisms of 2A-stimulated ribosomal pausing and frameshifting in Theilovirus

    Hill, C. H., Cook, G. M., Napthine, S., Kibe, A., Brown, K., Caliskan, N., Firth, A. E., Graham, S. C. & Brierley, I., 9 Nov 2021

    Article in Nucleic Acids Research

  47. Kinship Dynamics: Patterns and Consequences of Changes in Local Relatedness

    Croft, D. P., Weiss, M. N., Nielsen, M. L. K., Grimes, C., Cant, M. A., Ellis, S., Franks, D. W. & Johnstone, R. A., 26 Jul 2021, (Accepted/In press)

    Article in Proceedings of the Royal Society B

  48. Livestock manure type affects microbial community composition and assembly during composting

    Wan, J., Wang, X., Yang, T., Wei, Z., Banerjee, S., Friman, V-P., Mei, X., Xu, Y. & Shen, Q., 25 Feb 2021, (Accepted/In press)

    Article in Frontiers in Microbiology

  49. Mapping and Monitoring Zero-Deforestation Commitments

    Austin, K. G., Heilmayr, R., Benedict, J. J., Burns, D. N., Eggen, M., Grantham, H., Greenbury, A., Hill, J. K., Jenkins, C. N., Luskin, M. S., Manurung, T., Rasmussen, L. V., Rosoman, G., Rudorff, B., Satar, M., Smith, C. & Carlson, K. M., 18 Aug 2021

    Article in BioScience

  50. Mixture models as a method for comparative sociality: social networks and demographic change in resident killer whales

    Ellis, S., Franks, D. W., Weiss, M., Cant, M. A., Domenici, P., Balcomb, K. C., Ellifrit, D. K. & Croft, D. P., 5 Apr 2021

    Article in Behavioral Ecology and Sociobiology

  51. Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids

    Bayer, P. E., Scheben, A., Golicz, A. A., Yuan, Y., Faure, S., Lee, H., Chawla, H. S., Anderson, R., Bancroft, I., Raman, H., Lim, Y. P., Robbens, S., Jiang, L., Liu, S., Barker, M. S., Schranz, M. E., Wang, X., King, G. J., Pires, J. C., Chalhoub, B. & 3 others, Snowdon, R. J., Batley, J. & Edwards, D., 26 Jul 2021, (E-pub ahead of print)

    Article in Plant biology

  52. Nest choice in arboreal ants is an emergent consequence of network creation under spatial constraints

    Chang, J., Powell, S., Robinson, E. J. H. & Donaldson-Matasci, M. C., 24 Apr 2021, (E-pub ahead of print)

    Article in Swarm Intelligence

  53. No evidence for basigin/CD147 as a direct SARS-CoV-2 spike binding receptor

    Shilts, J., Crozier, T. W. M., Greenwood, E. J. D., Lehner, P. J. & Wright, G. J., 11 Jan 2021

    Article in Scientific Reports

Previous 1 2 Next