Search research publications and outputs

  1. 2021
  2. Structural and molecular basis for Cardiovirus 2A protein as a viral gene expression switch

    Hill, C. H., Pekarek, L., Napthine, S., Kibe, A., Firth, A. E., Graham, S. C., Caliskan, N. & Brierley, I., 9 Dec 2021

    Article in Nature Communications

  3. Identification of individual root-knot nematodes using low coverage long-read sequencing

    Sellers, G. S., Jeffares, D. C., Lawson, B., Prior, T. & Lunt, D. H., 1 Dec 2021

    Article in PLOS one

  4. Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids

    Bayer, P. E., Scheben, A., Golicz, A. A., Yuan, Y., Faure, S., Lee, H., Chawla, H. S., Anderson, R., Bancroft, I., Raman, H., Lim, Y. P., Robbens, S., Jiang, L., Liu, S., Barker, M. S., Schranz, M. E., Wang, X., King, G. J., Pires, J. C., Chalhoub, B. & 3 others, Snowdon, R. J., Batley, J. & Edwards, D., 30 Nov 2021

    Article in Plant biology

  5. Search for in-band transitions in the candidate superdeformed band in Si 28

    Morris, L., Jenkins, D. G., Harakeh, M. N., Isaak, J., Kobayashi, N., Tamii, A., Adachi, S., Adsley, P., Aoi, N., Bracco, A., Brown, A., Carpenter, M. P., Carroll, J. J., Courtin, S., Crespi, F. C. L., Davies, P. J., Fruet, G., Fang, Y. D., Fujita, H., Gey, G. & 22 others, Hoang, T. H., Ichige, N., Ideguchi, E., Inoue, A., Iwamoto, C., Koike, T., Raju, M. K., Liu, M. L., Montanari, D., Von Neumann-Cosel, P., Noji, S., Ong, H. J., Savran, D., Schmitt, J. M., Sullivan, C., Wasilewska, B., Weinert, M., Werner, V., Yamamoto, Y., Zegers, R. G. T., Zhou, X. H. & Zhu, S., 30 Nov 2021

    Article in Physical Review C

  6. Chromosome segregation in Archaea: SegA– and SegB–DNA complex structures provide insights into segrosome assembly

    Yen, C-Y., Lin, M-G., Chen, B-W., Ng, I. W. L., Read, N., Kabli, A., Wu, C-T., Shen, Y-Y., Chen, C-H., Barilla, D., Sun, Y-J. & Hsiao, C-D., 29 Nov 2021

    Article in Nucleic Acids Research

  7. Targeted therapy for LIMD1-deficient non-small cell lung cancer subtypes

    Davidson, K., Grevitt, P., Contreras-Gerenas, M. F., Bridge, K. S., Hermida, M., Shah, K. M., Mardakheh, F. K., Stubbs, M., Burke, R., Casado, P., Cutillas, P. R., Martin, S. A. & Sharp, T. V., 11 Nov 2021

    Article in Cell Death and Disease

  8. Investigating molecular mechanisms of 2A-stimulated ribosomal pausing and frameshifting in Theilovirus

    Hill, C. H., Cook, G. M., Napthine, S., Kibe, A., Brown, K., Caliskan, N., Firth, A. E., Graham, S. C. & Brierley, I., 9 Nov 2021

    Article in Nucleic Acids Research

  9. Characterisation of the enzyme transport path between shipworms and their bacterial symbionts

    Pesante, G., Sabbadin, F., Elias, L., Steele-King, C., Shipway, J. R., Dowle, A., Li, Y., Busse-Wicher, M., Dupree, P., Besser, K., Cragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 1 Nov 2021

    Article in BMC Biology

  10. Plasmid fitness costs are caused by specific genetic conflicts enabling resolution by compensatory mutation

    Hall, J. P. J., Wright, R., Harrison, E., Muddiman, K. J., Wood, A. J., Paterson, S. & Brockhurst, M., 13 Oct 2021

    Article in PLoS Biol.

  11. Arable fields as potential reservoirs of biodiversity: earthworm populations increase in new leys

    Prendergast-Miller, M., Jones, D., Berdeni, D., Bird, S., Chapman, P. J., Firbank, L., Grayson, R., Helgason, T., Holden, J., Lappage, M., Leake, J. & Hodson, M. E., 1 Oct 2021

    Article in Science of the Total Environment

  12. The genome of the zoonotic malaria parasite Plasmodium simium reveals adaptations to host switching

    Mourier, T., de Alvarenga, D. A. M., Kaushik, A., de Pina-Costa, A., Douvropoulou, O., Guan, Q., Guzmán-Vega, F. J., Forrester, S., de Abreu, F. V. S., Júnior, C. B., de Souza Junior, J. C., Moreira, S. B., Hirano, Z. M. B., Pissinatti, A., Ferreira-da-Cruz, M. D. F., de Oliveira, R. L., Arold, S. T., Jeffares, D. C., Brasil, P., de Brito, C. F. A. & 3 others, Culleton, R., Daniel-Ribeiro, C. T. & Pain, A., 1 Oct 2021

    Article in BMC Biology

  13. Ozone production and precursor emission from wildfires in Africa

    Lee, J. D., Squires, F. A., Sherwen, T., Wilde, S. E., Cliff, S. J., Carpenter, L. J., Hopkins, J. R., Bauguitte, S. J., Reed, C., Barker, P., Allen, G., Bannan, T. J., Matthews, E., Mehra, A., Percival, C., Heard, D. E., Whalley, L. K., Ronnie, G. V., Seldon, S., Ingham, T. & 4 others, Keller, C. A., Knowland, K. E., Nisbet, E. G. & Andrews, S., 23 Sep 2021

    Article in Environmental Science: Atmospheres

  14. Species Diversity and Phylogenetic Relationships of Olive Lace Bugs (Hemiptera: Tingidae) Found in South Africa

    Hlaka, V., Guilbert, É., Smit, C., van Noort, S., Allsopp, E., Langley, J. & van Asch, B., 15 Sep 2021

    Article in Insects

  15. R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements

    Ellis, D. A., Reyes-Martín, F., Rodríguez-López, M., Cotobal, C., Sun, X. M., Saintain, Q., Jeffares, D. C., Marguerat, S., Tallada, V. A. & Bähler, J., 31 Aug 2021

    Article in PLoS Genetics

  16. Estimating the dwarfing rate of an extinct Sicilian elephant

    Baleka, S., Herridge, V. L., Catalano, G., Lister, A. M., Dickinson, M. R., Di Patti, C., Barlow, A., Penkman, K. E. H., Hofreiter, M. & Paijmans, J. L. A., 23 Aug 2021

    Article in Current Biology

  17. Mapping and Monitoring Zero-Deforestation Commitments

    Austin, K. G., Heilmayr, R., Benedict, J. J., Burns, D. N., Eggen, M., Grantham, H., Greenbury, A., Hill, J. K., Jenkins, C. N., Luskin, M. S., Manurung, T., Rasmussen, L. V., Rosoman, G., Rudorff, B., Satar, M., Smith, C. & Carlson, K. M., 18 Aug 2021

    Article in BioScience

  18. The structural basis for high-affinity uptake of lignin-derived aromatic compounds by proteobacterial TRAP transporters

    Bisson, C., Salmon, R. C., West, L., Rafferty, J. B., Hitchcock, A., Thomas, G. H. & Kelly, D. J., 18 Aug 2021

    Article in FEBS Journal

  19. A proteome-wide genetic investigation identifies several SARS-CoV-2-exploited host targets of clinical relevance

    Anisul, M., Shilts, J., Schwartzentruber, J., Hayhurst, J., Buniello, A., Mohammed, E. S. E., Zheng, J., Holmes, M., Ochoa, D., Carmona, M., Maranville, J., Gaunt, T. R., Emilsson, V., Gudnason, V., McDonagh, E. M., Wright, G. J., Ghoussaini, M. & Dunham, I., 17 Aug 2021

    Article in eLife

  20. Validating layer-specific VASO across species

    Huber, L., Poser, B. A., Kaas, A. L., Fear, E. J., Dresbach, S., Berwick, J., Goebel, R., Turner, R. & Kennerley, A. J., 15 Aug 2021

    Article in Neuroimage

  21. Cell-Free Total Biosynthesis of Plant Terpene Natural Products Using an Orthogonal Cofactor Regeneration System

    Bat-Erdene, U., Billingsley, J. M., Turner, W. C., Lichman, B. R., Ippoliti, F. M., Garg, N. K., O'Connor, S. E. & Tang, Y., 6 Aug 2021

    Article in ACS Catalysis

  22. Characterisation of a laser plasma betatron source for high resolution x-ray imaging

    Finlay, O. J., Gruse, J. N., Thornton, C., Allott, R., Armstrong, C. D., Baird, C. D., Bourgeois, N., Brenner, C., Cipiccia, S., Cole, J. M., Gregory, C., Jamison, S., Katzir, Y., Lopes, N. C., Mangles, S. P. D., Murphy, C. D., Najmudin, Z., Neely, D., Pickard, L. R., Potter, K. D. & 8 others, Rajeev, P. P., Rusby, D., Selwood, M. P., Symes, D. R., Underwood, C. I. D., Wood, J. C., Thomas, A. G. R. & Streeter, M. J. V., 1 Aug 2021

    Article in Plasma Physics and Controlled Fusion

  23. Soil quality regeneration by grass-clover leys in arable rotations compared to permanent grassland: effects on wheat yield and resilience to drought and flooding

    Berdeni, D., Turner, A., Grayson, R., Llanos, J., Holden, J., Firbank, L., Lappage, M., Hunt, SPF., Chapman, P. J., Hodson, M. E., Helgason, T., Watt, P. & Leake, J., 1 Aug 2021

    Article in Soil and Tillage Research

  24. Validation of a novel associative transcriptomics pipeline in Brassica oleracea: Identifying candidates for vernalisation response

    Woodhouse, S., He, Z., Woolfenden, H., Steuernagel, B., Haerty, W., Bancroft, I., Irwin, J. A., Morris, R. J. & Wells, R., 13 Jul 2021

    Article in BMC Genomics

  25. Tau, XMAP215/Msps and Eb1 co-operate interdependently to regulate microtubule polymerisation and bundle formation in axons

    Hahn, I., Voelzmann, A., Parkin, J., Fülle, J. B., Slater, P. G., Lowery, L. A., Sanchez-Soriano, N. & Prokop, A., 6 Jul 2021

    Article in PLoS Genetics

  26. Biorefining Potential of Wild-Grown Arundo donax, Cortaderia selloana and Phragmites australis and the Feasibility of White-Rot Fungi-Mediated Pretreatments

    da Costa, R. M. F., Winters, A., Hauck, B., Martin, D., Bosch, M., Simister, R., Gomez, L. D., Batista de Carvalho, L. A. E. & Canhoto, J. M., 2 Jul 2021

    Article in Frontiers in Plant Science

  27. An invariant Trypanosoma vivax vaccine antigen inducing protective immunity

    Autheman, D., Crosnier, C., Clare, S., Goulding, D. A., Brandt, C., Harcourt, K., Tolley, C., Galaway, F., Khushu, M., Ong, H., Romero-Ramirez, A., Duffy, C. W., Jackson, A. P. & Wright, G. J., 1 Jul 2021

    Article in Nature

  28. Multi-omics Study of Planobispora rosea, Producer of the Thiopeptide Antibiotic GE2270A

    Del Carratore, F., Iorio, M., Pérez-Bonilla, M., Schmidt, K., Pérez-Redondo, R., Sosio, M., Macdonald, S. J., Gyulev, I. S., Tsigkinopoulou, A., Thomas, G. H., Genilloud, O., Rodríguez-García, A., Donadio, S., Breitling, R. & Takano, E., 22 Jun 2021

    Article in mSystems

  29. Rapid transformation of ambient absorbing aerosols from West African biomass burning

    Wu, H., Taylor, J. W., Langridge, J. M., Yu, C., Allan, J. D., Szpek, K., Cotterell, M. I., Williams, P. I., Flynn, M., Barker, P., Fox, C., Allen, G., Lee, J. & Coe, H., 21 Jun 2021

    Article in Atmospheric Chemistry and Physics

  30. Age and sex influence social interactions, but not associations, within a killer whale pod

    Weiss, M. N., Franks, D. W., Giles, D. A., Youngstrom, S., Wasser, S. K., Balcomb, K. C., Ellifrit, D. K., Domenici, P., Cant, M. A., Ellis, S., Nielsen, M. L. K., Grimes, C. & Croft, D. P., 16 Jun 2021

    Article in PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

  31. Evolution of a virus-like architecture and packaging mechanism in a repurposed bacterial protein

    Tetter, S., Terasaka, N., Steinauer, A., Clark, S., Scott, A. J. P., Patel, N., Leibundgut, M., Wroblewski, E., Ban, N., Stockley, P. G., Twarock, R., Hilvert, D. & Bingham, R. J., 11 Jun 2021

    Article in Science

  32. Hematopoietic stem cells retain functional potential and molecular identity in hibernation cultures

    Oedekoven, C. A., Belmonte, M., Bode, D., Hamey, F. K., Shepherd, M. S., Che, J. L. C., Boyd, G., McDonald, C., Belluschi, S., Diamanti, E., Bastos, H. P., Bridge, K. S., Göttgens, B., Laurenti, E. & Kent, D. G., 8 Jun 2021

    Article in Stem Cell Reports

  33. An early-morning gene network controlled by phytochromes and cryptochromes regulates photomorphogenesis pathways in Arabidopsis

    Balcerowicz, M., Mahjoub, M., Nguyen, D., Lan, H., Stoeckle, D., Conde, S., Jaeger, K., Wigge, P. A. & Ezer, D., 7 Jun 2021

    Article in Molecular plant

  34. Elucidating the multifunctional role of the cell wall components in the maize exploitation

    Gomez, L. D., Ana, LM., Malvar, R. A., Souto, X. C., Simister, R., Encina, A., Barros‑Rios, J., Pereira‑Crespo, S. & Santiago, R., 4 Jun 2021

    Article in BMC Plant Biology

  35. FTIR Screening to Elucidate Compositional Differences in Maize Recombinant Inbred Lines with ContrastingSaccharification Efficiency Yields

    López-Malvar, A., Santiago, R., Martin, D., Pereira dos Santos, I., Batista de Carvalho, L. A. E., Faas, L., Gomez, L. D. & da Costa, R. M. F., 2 Jun 2021

    Article in Agronomy

  36. Genome structural evolution in Brassica crops

    He, Z., Ji, R., Havlickova, L., Wang, L., Li, Y., Lee, H. T., Song, J., Koh, C., Yang, J., Zhang, M., Parkin, I. A. P., Wang, X., Edwards, D., King, G. J., Zou, J., Liu, K., Snowdon, R. J., Banga, S. S., Machackova, I. & Bancroft, I., 27 May 2021

    Article in Nature Plants

  37. Somatic mutation landscapes at single-molecule resolution

    Abascal, F., Harvey, L. M. R., Mitchell, E., Lawson, A. R. J., Lensing, S. V., Ellis, P., Russell, A. J. C., Alcantara, R. E., Baez-Ortega, A., Wang, Y., Kwa, E. J., Lee-Six, H., Cagan, A., Coorens, T. H. H., Chapman, M. S., Olafsson, S., Leonard, S., Jones, D., Machado, H., Davies, M. & 12 others, Øbro, N. F., Mahubani, K., Allinson, K., Gerstung, M., Saeb-Parsy, K., Kent, D. G., Laurenti, E., Stratton, M. R., Rahbari, R., Campbell, P. J., Osborne, R. J. & Martincorena, I., 20 May 2021

    Article in Nature

  38. What is quantitative plant biology?

    Autran, D., Bassel, G. W., Chae, E., Ezer, D., Ferjani, A., Fleck, C., Hamant, O., Hartmann, F. P., Jiao, Y., Johnston, I. G., Kwiatkowska, D., Lim, B. L., Mahonen, A. P., Morris, R. J., Mulder, B. M., Nakayama, N., Sozzani, R., Strader, L. C., Tusscher, K. T., Ueda, M. & 1 others, Wolf, S., 20 May 2021

    Article in Quantitative Plant Biology

  39. Reconstruction of Microbial Haplotypes by Integration of Statistical and Physical Linkage in Scaffolding

    Cao, C., He, J., Mak, L., Perera, D., Kwok, D., Wang, J., Li, M., Mourier, T., Gavriliuc, S., Greenberg, M., Morrissy, A. S., Sycuro, L. K., Yang, G., Jeffares, D. C. & Long, Q., 19 May 2021

    Article in Molecular Biology and Evolution

  40. Effectiveness of glass beads for plating cell cultures

    Prusokas, A., Hawkins, M., Nieduszynski, C. A. & Retkute, R., 17 May 2021

    Article in Physical Review E

  41. Evaluation of the Stability of Bacteriophages in Different Solutions Suitable for the Production of Magistral Preparations in Belgium

    Duyvejonck, H., Merabishvili, M., Vaneechoutte, M., de Soir, S., Wright, R., Friman, V-P., Verbeken, G., De Vos, D., Pirnay, J-P., Van Mechelen, E. & Vermeulen, S. J. T., 8 May 2021

    Article in Viruses

  42. A non-destructive sugar-feeding assay for parasite detection and estimating the extrinsic incubation period of Plasmodium falciparum in individual mosquito vectors

    Guissou, E., Waite, J. L., Jones, M., Bell, A. S., Suh, E., Yameogo, K. B., Djègbè, N., Da, D. F., Hien, D. F. D. S., Yerbanga, R. S., Ouedraogo, A. G., Dabiré, K. R., Cohuet, A., Thomas, M. B. & Lefèvre, T., 29 Apr 2021

    Article in Scientific Reports

  43. Mixture models as a method for comparative sociality: social networks and demographic change in resident killer whales

    Ellis, S., Franks, D. W., Weiss, M., Cant, M. A., Domenici, P., Balcomb, K. C., Ellifrit, D. K. & Croft, D. P., 5 Apr 2021

    Article in Behavioral Ecology and Sociobiology

  44. The Anaerobic Fungi: Challenges and Opportunities for Industrial Lignocellulosic Biofuel Production

    Saye, L. M. G., Navaratna, T. A., Chong, J. P. J., O'Malley, M. A., Theodorou, M. K. & Reilly, M., 27 Mar 2021

    Article in Microorganisms

  45. High-Throughput Peptide Derivatization toward Supramolecular Diversification in Microtiter Plates

    Lin, Y., Penna, M., Spicer, C. D., Higgins, S. G., Gelmi, A., Kim, N., Wang, S-T., Wojciechowski, J. P., Pashuck, E. T., Yarovsky, I. & Stevens, M. M., 23 Mar 2021

    Article in ACS Nano

  46. Livestock manure type affects microbial community composition and assembly during composting

    Wan, J., Wang, X., Yang, T., Wei, Z., Banerjee, S., Friman, V-P., Mei, X., Xu, Y. & Shen, Q., 22 Mar 2021

    Article in Frontiers in Microbiology

  47. Human erythroid progenitors are directly infected by SARS-CoV-2: Implications for hypoxia and emerging haematopoiesis/erythropoiesis in COVID-19

    Encabo, H. H., Grey, W. G., Garcia-Albornoz, M., Wood, H., Ulferts, R., Aramburu, I. V., Kulasekararaj, A. G., Mufti, G., Papayannopoulos, V., Beale, R. & Bonnet, D., 9 Mar 2021

    Article in Stem Cell Reports

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