Search research publications and outputs

  1. A Non-Canonical Function of Arabidopsis ERECTA Proteins in Gibberellin Signaling

    Davis, S. J., 3 Dec 2021, 51 p. (bioRxiv).

    Research output: Working paperPreprint

  2. A low-complexity region in the YTH domain protein Mmi1 enhances RNA binding

    Stowell, J. A. W., Wagstaff, J. L., Hill, C. H., Yu, M., McLaughlin, S. H., Freund, S. M. V. & Passmore, L. A., 4 Jan 2021

    Article in The Journal of biological chemistry

  3. A non-destructive sugar-feeding assay for parasite detection and estimating the extrinsic incubation period of Plasmodium falciparum in individual mosquito vectors

    Guissou, E., Waite, J. L., Jones, M., Bell, A. S., Suh, E., Yameogo, K. B., Djègbè, N., Da, D. F., Hien, D. F. D. S., Yerbanga, R. S., Ouedraogo, A. G., Dabiré, K. R., Cohuet, A., Thomas, M. B. & Lefèvre, T., 29 Apr 2021

    Article in Scientific Reports

  4. A proteome-wide genetic investigation identifies several SARS-CoV-2-exploited host targets of clinical relevance

    Anisul, M., Shilts, J., Schwartzentruber, J., Hayhurst, J., Buniello, A., Mohammed, E. S. E., Zheng, J., Holmes, M., Ochoa, D., Carmona, M., Maranville, J., Gaunt, T. R., Emilsson, V., Gudnason, V., McDonagh, E. M., Wright, G. J., Ghoussaini, M. & Dunham, I., 17 Aug 2021

    Article in eLife

  5. Age and sex influence social interactions, but not associations, within a killer whale pod

    Weiss, M. N., Franks, D. W., Giles, D. A., Youngstrom, S., Wasser, S. K., Balcomb, K. C., Ellifrit, D. K., Domenici, P., Cant, M. A., Ellis, S., Nielsen, M. L. K., Grimes, C. & Croft, D. P., 16 Jun 2021

    Article in PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

  6. An early-morning gene network controlled by phytochromes and cryptochromes regulates photomorphogenesis pathways in Arabidopsis

    Balcerowicz, M., Mahjoub, M., Nguyen, D., Lan, H., Stoeckle, D., Conde, S., Jaeger, K., Wigge, P. A. & Ezer, D., 7 Jun 2021

    Article in Molecular plant

  7. An invariant Trypanosoma vivax vaccine antigen inducing protective immunity

    Autheman, D., Crosnier, C., Clare, S., Goulding, D. A., Brandt, C., Harcourt, K., Tolley, C., Galaway, F., Khushu, M., Ong, H., Romero-Ramirez, A., Duffy, C. W., Jackson, A. P. & Wright, G. J., 1 Jul 2021

    Article in Nature

  8. Arable fields as potential reservoirs of biodiversity: earthworm populations increase in new leys

    Prendergast-Miller, M., Jones, D., Berdeni, D., Bird, S., Chapman, P. J., Firbank, L., Grayson, R., Helgason, T., Holden, J., Lappage, M., Leake, J. & Hodson, M. E., 1 Oct 2021

    Article in Science of the Total Environment

  9. Biorefining Potential of Wild-Grown Arundo donax, Cortaderia selloana and Phragmites australis and the Feasibility of White-Rot Fungi-Mediated Pretreatments

    da Costa, R. M. F., Winters, A., Hauck, B., Martin, D., Bosch, M., Simister, R., Gomez, L. D., Batista de Carvalho, L. A. E. & Canhoto, J. M., 2 Jul 2021

    Article in Frontiers in Plant Science

  10. Building crannogs in the 9th–12th centuries AD in northern Scotland: an old tradition in a new landscape

    Stratigos, M. J. & Noble, G., 16 Sep 2021, Proceedings of RURALIA XIII Stirling, Scotland, September 2019. Leiden: Sidestone Press, p. 179-188 10 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)peer-review

  11. Cell-Free Total Biosynthesis of Plant Terpene Natural Products Using an Orthogonal Cofactor Regeneration System

    Bat-Erdene, U., Billingsley, J. M., Turner, W. C., Lichman, B. R., Ippoliti, F. M., Garg, N. K., O'Connor, S. E. & Tang, Y., 6 Aug 2021

    Article in ACS Catalysis

  12. Characterisation of a laser plasma betatron source for high resolution x-ray imaging

    Finlay, O. J., Gruse, J. N., Thornton, C., Allott, R., Armstrong, C. D., Baird, C. D., Bourgeois, N., Brenner, C., Cipiccia, S., Cole, J. M., Gregory, C., Jamison, S., Katzir, Y., Lopes, N. C., Mangles, S. P. D., Murphy, C. D., Najmudin, Z., Neely, D., Pickard, L. R., Potter, K. D. & 8 others, Rajeev, P. P., Rusby, D., Selwood, M. P., Symes, D. R., Underwood, C. I. D., Wood, J. C., Thomas, A. G. R. & Streeter, M. J. V., 1 Aug 2021

    Article in Plasma Physics and Controlled Fusion

  13. Characterisation of the enzyme transport path between shipworms and their bacterial symbionts

    Pesante, G., Sabbadin, F., Elias, L., Steele-King, C., Shipway, J. R., Dowle, A., Li, Y., Busse-Wicher, M., Dupree, P., Besser, K., Cragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 1 Nov 2021

    Article in BMC Biology

  14. Characterization of a new Leishmania major strain for use in a controlled human infection model

    Ashwin, H., Sadlova, J., Vojtkova, B., Becvar, T., Lypaczewski, P., Schwartz, E., Greensted, E., Van Bocxlaer, K., Pasin, M., Lipinski, K. S., Parkash, V., Matlashewski, G., Layton, A. M., Lacey, C. J. N., Jaffe, C. L., Volf, P. & Kaye, P., 11 Jan 2021

    Article in Nature Communications

  15. Chromosome segregation in Archaea: SegA– and SegB–DNA complex structures provide insights into segrosome assembly

    Yen, C-Y., Lin, M-G., Chen, B-W., Ng, I. W. L., Read, N., Kabli, A., Wu, C-T., Shen, Y-Y., Chen, C-H., Barilla, D., Sun, Y-J. & Hsiao, C-D., 29 Nov 2021

    Article in Nucleic Acids Research

  16. Cropland trees need to be included for accurate model simulations of land-atmosphere heat fluxes, temperature, boundary layer height, and ozone

    Mishra, A. K., Sinha, B., Kumar, R., Barth, M., Hakkim, H., Kumar, V., Kumar, A., Datta, S., Guenther, A. & Sinha, V., 10 Jan 2021

    Article in Science of the Total Environment

  17. Design of experiments driven optimization of alkaline pretreatment and saccharification for sugarcane bagasse

    Mota, T. R., Oliveira, D. M., Simister, R., Whitehead, C. B., Lanot, A., Dos Santos, W. D., Rezende, C. A., McQueen Mason, S. J. & Gomez, L. D., 1 Feb 2021

    Article in BIORESOURCE TECHNOLOGY

  18. Dryland nature based solutions for informal settlement upgrading schemes in Africa

    Thorn, J. P. R., Hejnowicz, A. P., Marchant, R., Ajala, O. A., Delgado, G., Shackleton, S., Kavonic, J. & Cinderby, S., 1 Feb 2021, 10 p. ICLEI Africa.

    Research output: Other contribution

  19. Elevational specialization and the monitoring of the effects of climate change in insects: beetles in a Brazilian rainforest mountain

    Colares, C., Roza, A. S., Mermudes, J. R. M., da Silveira, L. F. L., Khattar, G., Mayhew, P. J., Monteiro, R. F., Nunes, M. F. S. Q. C. & Macedo, M. V., Jan 2021

    Article in Ecological Indicators

  20. Elucidating the multifunctional role of the cell wall components in the maize exploitation

    Gomez, L. D., Ana, LM., Malvar, R. A., Souto, X. C., Simister, R., Encina, A., Barros‑Rios, J., Pereira‑Crespo, S. & Santiago, R., 4 Jun 2021

    Article in BMC Plant Biology

  21. Epitope Mapping of Exposed Tegument and Alimentary Tract Proteins Identifies Putative Antigenic Targets of the Attenuated Schistosome Vaccine

    Farias, L. P., Vance, G. M., Coulson, P. S., Vitoriano-Souza, J., Neto, A. P. D. S., Wangwiwatsin, A., Neves, L. X., Castro-Borges, W., McNicholas, S., Wilson, K. S., Leite, L. C. C. & Wilson, R. A., 3 Mar 2021

    Article in Frontiers in immunology

  22. Estimating the dwarfing rate of an extinct Sicilian elephant

    Baleka, S., Herridge, V. L., Catalano, G., Lister, A. M., Dickinson, M. R., Di Patti, C., Barlow, A., Penkman, K. E. H., Hofreiter, M. & Paijmans, J. L. A., 23 Aug 2021

    Article in Current Biology

  23. Evolution of a virus-like architecture and packaging mechanism in a repurposed bacterial protein

    Tetter, S., Terasaka, N., Steinauer, A., Clark, S., Scott, A. J. P., Patel, N., Leibundgut, M., Wroblewski, E., Ban, N., Stockley, P. G., Twarock, R., Hilvert, D. & Bingham, R. J., 11 Jun 2021

    Article in Science

  24. FTIR Screening to Elucidate Compositional Differences in Maize Recombinant Inbred Lines with ContrastingSaccharification Efficiency Yields

    López-Malvar, A., Santiago, R., Martin, D., Pereira dos Santos, I., Batista de Carvalho, L. A. E., Faas, L., Gomez, L. D. & da Costa, R. M. F., 2 Jun 2021

    Article in Agronomy

  25. Facility level measurement of offshore oil and gas installations from a medium-sized airborne platform: method development for quantification and source identification of methane emissions

    France, J. L., Bateson, P., Dominutti, P., Allen, G., Andrews, S., Bauguitte, S., Coleman, M., Lachlan-Cope, T., Fisher, R. E., Huang, L., Jones, A. E., Lee, J., Lowry, D., Pitt, J., Purvis, R., Pyle, J., Shaw, J., Warwick, N., Weiss, A., Wilde, S. & 2 others, Witherstone, J. & Young, S., 5 Jan 2021

    Article in Atmospheric Measurement Techniques

  26. Fast acting allosteric phosphofructokinase inhibitors block trypanosome glycolysis and cure acute African trypanosomiasis in mice

    McNae, I. W., Kinkead, J., Malik, D., Yen, L-H., Walker, M. K., Swain, C., Webster, S. P., Gray, N., Fernandes, P. M., Myburgh, E., Blackburn, E. A., Ritchie, R., Austin, C., Wear, M. A., Highton, A. J., Keats, A. J., Vong, A., Dornan, J., Mottram, J. C., Michels, P. A. M. & 2 others, Pettit, S. & Walkinshaw, M. D., 16 Feb 2021

    Article in Nature Communications

  27. Genome structural evolution in Brassica crops

    He, Z., Ji, R., Havlickova, L., Wang, L., Li, Y., Lee, H. T., Song, J., Koh, C., Yang, J., Zhang, M., Parkin, I. A. P., Wang, X., Edwards, D., King, G. J., Zou, J., Liu, K., Snowdon, R. J., Banga, S. S., Machackova, I. & Bancroft, I., 27 May 2021

    Article in Nature Plants

  28. Hematopoietic stem cells retain functional potential and molecular identity in hibernation cultures

    Oedekoven, C. A., Belmonte, M., Bode, D., Hamey, F. K., Shepherd, M. S., Che, J. L. C., Boyd, G., McDonald, C., Belluschi, S., Diamanti, E., Bastos, H. P., Bridge, K. S., Göttgens, B., Laurenti, E. & Kent, D. G., 8 Jun 2021

    Article in Stem Cell Reports

  29. Human erythroid progenitors are directly infected by SARS-CoV-2: Implications for hypoxia and emerging haematopoiesis/erythropoiesis in COVID-19

    Encabo, H. H., Grey, W. G., Garcia-Albornoz, M., Wood, H., Ulferts, R., Aramburu, I. V., Kulasekararaj, A. G., Mufti, G., Papayannopoulos, V., Beale, R. & Bonnet, D., 9 Mar 2021

    Article in Stem Cell Reports

  30. Identification of individual root-knot nematodes using low coverage long-read sequencing

    Sellers, G. S., Jeffares, D. C., Lawson, B., Prior, T. & Lunt, D. H., 1 Dec 2021

    Article in PLOS one

  31. Impact and cost-effectiveness of a lethal house lure against malaria transmission in central Côte d'Ivoire: a two-arm, cluster-randomised controlled trial

    Sternberg, E. D., Cook, J., Alou, L. P. A., Assi, S. B., Koffi, A. A., Doudou, D. T., Aoura, C. J., Wolie, R. Z., Oumbouke, W. A., Worrall, E., Kleinschmidt, I., N'Guessan, R. & Thomas, M. B., 27 Feb 2021

    Article in The Lancet

  32. Investigating molecular mechanisms of 2A-stimulated ribosomal pausing and frameshifting in Theilovirus

    Hill, C. H., Cook, G. M., Napthine, S., Kibe, A., Brown, K., Caliskan, N., Firth, A. E., Graham, S. C. & Brierley, I., 9 Nov 2021

    Article in Nucleic Acids Research

  33. Mapping and Monitoring Zero-Deforestation Commitments

    Austin, K. G., Heilmayr, R., Benedict, J. J., Burns, D. N., Eggen, M., Grantham, H., Greenbury, A., Hill, J. K., Jenkins, C. N., Luskin, M. S., Manurung, T., Rasmussen, L. V., Rosoman, G., Rudorff, B., Satar, M., Smith, C. & Carlson, K. M., 18 Aug 2021

    Article in BioScience

  34. Measurement of Compton scattering at MAMI for the extraction of the electric and magnetic polarizabilities of the proton

    (A2 Collaboration at MAMI), 29 Oct 2021, arXiv, 7 p.

    Research output: Working paperPreprint

  35. Mixture models as a method for comparative sociality: social networks and demographic change in resident killer whales

    Ellis, S., Franks, D. W., Weiss, M., Cant, M. A., Domenici, P., Balcomb, K. C., Ellifrit, D. K. & Croft, D. P., 5 Apr 2021

    Article in Behavioral Ecology and Sociobiology

  36. Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids

    Bayer, P. E., Scheben, A., Golicz, A. A., Yuan, Y., Faure, S., Lee, H., Chawla, H. S., Anderson, R., Bancroft, I., Raman, H., Lim, Y. P., Robbens, S., Jiang, L., Liu, S., Barker, M. S., Schranz, M. E., Wang, X., King, G. J., Pires, J. C., Chalhoub, B. & 3 others, Snowdon, R. J., Batley, J. & Edwards, D., 30 Nov 2021

    Article in Plant biology

  37. Multi-omics Study of Planobispora rosea, Producer of the Thiopeptide Antibiotic GE2270A

    Del Carratore, F., Iorio, M., Pérez-Bonilla, M., Schmidt, K., Pérez-Redondo, R., Sosio, M., Macdonald, S. J., Gyulev, I. S., Tsigkinopoulou, A., Thomas, G. H., Genilloud, O., Rodríguez-García, A., Donadio, S., Breitling, R. & Takano, E., 22 Jun 2021

    Article in mSystems

  38. No evidence for basigin/CD147 as a direct SARS-CoV-2 spike binding receptor

    Shilts, J., Crozier, T. W. M., Greenwood, E. J. D., Lehner, P. J. & Wright, G. J., 11 Jan 2021

    Article in Scientific Reports

  39. Ozone production and precursor emission from wildfires in Africa

    Lee, J. D., Squires, F. A., Sherwen, T., Wilde, S. E., Cliff, S. J., Carpenter, L. J., Hopkins, J. R., Bauguitte, S. J., Reed, C., Barker, P., Allen, G., Bannan, T. J., Matthews, E., Mehra, A., Percival, C., Heard, D. E., Whalley, L. K., Ronnie, G. V., Seldon, S., Ingham, T. & 4 others, Keller, C. A., Knowland, K. E., Nisbet, E. G. & Andrews, S., 23 Sep 2021

    Article in Environmental Science: Atmospheres

  40. Palaeogenomic analysis of black rat (Rattus rattus) reveals multiple European introductions associated with human economic history

    Yu, H., Jamieson, A., Hulme-Beaman, A., Conroy, C. J., Knight, B., Speller, C., Al-Jarah, H., Eager, H., Trinks, A., Adikari, G., Baron, H., Böhlendorf-Arslan, B., Bohingamuwa, W., Crowther, A., Cucchi, T., Esser, K., Fleisher, J., Gidney, L., Gladilina, E., Gol’din, P. & 38 others, Goodman, S. M., Hamilton-Dyer, S., Helm, R., Hillman, C., Kallala, N., Kivikero, H., Kovács, Z. E., Karl Kunst, G., Kyselý, R., Linderholm, A., Maraoui-Telmini, B., Morales-Muñiz, A., Nabais, M., O’Connor, T., Oueslati, T., Quintana Morales, E. M., Pasda, K., Perera, J., Perera, N., Radbauer, S., Ramon, J., Rannamäe, E., Sanmarti Grego, J., Treasure, E., Valenzuela-Lamas, S., van der Jagt, I., Van Neer, W., Vigne, J-D., Walker, T., Wynne-Jones, S., Zeiler, J., Dobney, K., Boivin, N., Searle, J. B., Krause-Kyora, B., Krause, J., Larson, G. & Orton, D., 14 Apr 2021, (bioRxiv).

    Research output: Working paper

  41. Plasmid fitness costs are caused by specific genetic conflicts enabling resolution by compensatory mutation

    Hall, J. P. J., Wright, R., Harrison, E., Muddiman, K. J., Wood, A. J., Paterson, S. & Brockhurst, M., 13 Oct 2021

    Article in PLoS Biol.

  42. Protein acetylation in the critical biological processes in protozoan parasites

    Maran, S. R., Fleck, K., Monteiro-Teles, N. M., Isebe, T., Walrad, P., Jeffers, V., Cestari, I., Vasconcelos, E. J. R. & Moretti, N., 1 Sep 2021

    Review article in Trends in parasitology

  43. Protein methyltransferase 7 deficiency in Leishmania major increases neutrophil associated pathology in murine model

    Alcoforado Diniz, J., Chaves, M. M., Vaselek, S., Miserani Magalhães, R. D., Ricci-Azevedo, R., de Carvalho, R. V. H., Lorenzon, L. B., Ferreira, T. R., Zamboni, D., Walrad, P. B., Volf, P., Sacks, D. L. & Cruz, A. K., 2 Mar 2021

    Article in PLOS NEGLECTED TROPICAL DISEASES

  44. R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements

    Ellis, D. A., Reyes-Martín, F., Rodríguez-López, M., Cotobal, C., Sun, X. M., Saintain, Q., Jeffares, D. C., Marguerat, S., Tallada, V. A. & Bähler, J., 31 Aug 2021

    Article in PLoS Genetics

  45. Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp

    Farhat, S., Le, P., Kayal, E., Noel, B., Bigeard, E., Corre, E., Maumus, F., Florent, I., Alberti, A., Aury, J-M., Barbeyron, T., Cai, R., Da Silva, C., Istace, B., Labadie, K., Marie, D., Mercier, J., Rukwavu, T., Szymczak, J., Tonon, T. & 7 others, Alves-de-Souza, C., Rouzé, P., Van de Peer, Y., Wincker, P., Rombauts, S., Porcel, B. M. & Guillou, L., 6 Jan 2021

    Article in BMC Biology

  46. Rapid transformation of ambient absorbing aerosols from West African biomass burning

    Wu, H., Taylor, J. W., Langridge, J. M., Yu, C., Allan, J. D., Szpek, K., Cotterell, M. I., Williams, P. I., Flynn, M., Barker, P., Fox, C., Allen, G., Lee, J. & Coe, H., 21 Jun 2021

    Article in Atmospheric Chemistry and Physics

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