Search research publications and outputs

  1. 2022
  2. Challenges and a call to action for protecting European red wood ants

    Balzani, P., Dekoninck, W., Feldhaar, H., Freitag, A., Frizzi, F., Jan Frouz, F., Masoni, A., Robinson, E. J. H., Sorvar, J. & Santini, G., 5 Aug 2022, (E-pub ahead of print)

    Article in Conservation Biology

  3. Recommendations for empowering early career researchers to improve research culture and practice

    Kent, B. A., Holman, C., Amoako, E., Antonietti, A., Azam, J. M., Ballhausen, H., Bediako, Y., Belasen, A. M., Carneiro, C. F. D., Chen, Y-C., Compeer, E. B., Connor, C. A. C., Crüwell, S., Debat, H., Dorris, E., Ebrahimi, H., Erlich, J. C., Fernández-Chiappe, F., Fischer, F., Gazda, M. A. & 28 others, Glatz, T., Grabitz, P., Heise, V., Kent, D. G., Lo, H., McDowell, G., Mehta, D., Neumann, W-J., Neves, K., Patterson, M., Penfold, N. C., Piper, S. K., Puebla, I., Quashie, P. K., Quezada, C. P., Riley, J. L., Rohmann, J. L., Saladi, S., Schwessinger, B., Siegerink, B., Stehlik, P., Tzilivaki, A., Umbers, K. D. L., Varma, A., Walavalkar, K., de Winde, C. M., Zaza, C. & Weissgerber, T. L., 7 Jul 2022, (E-pub ahead of print)

    Article in PLoS Biology

  4. STAT1 is essential for HSC function and maintains MHCIIhi stem cells that resists myeloablation and neoplastic expansion

    Li, J., Williams, M. J., Park, H. J., Bastos, H. P., Wang, X., Prins, D. P., Wilson, N. K., Johnson, C., Sham, K., Wantoch, M., Watcham, S., Kinston, S. J., Pask, D. C., Hamilton, T. L., Sneade, R., Waller, A. K., Ghevaert, C., Vassiliou, G. S., Laurenti, E., Kent, D. G. & 2 others, Gottgens, B. & Green, A. R., 29 Jun 2022, (E-pub ahead of print)

    Article in Blood

  5. Flexible and digestible wood caused by viral-induced alteration of cell wall composition

    Allen, H., Zeef, L., Morreel, K., Goeminne, G., Kumar, M., Gomez, L. D., Dean, A. P., Eckmann, A., Casiraghi, C., McQueen-Mason, S. J., Boerjan, W. & Turner, S. R., 17 Jun 2022, (E-pub ahead of print)

    Article in Current Biology

  6. Identification of genetic loci in lettuce mediating quantitative resistance to fungal pathogens

    Pink, H., Talbot, A., Graceson, A., Graham, J., Higgins, G., Taylor, A., Jackson, A. C., Truco, M., Michelmore, R., Yao, C., Gawthrop, F., Pink, D., Hand, P., Clarkson, J. P. & Denby, K., 8 Jun 2022, (E-pub ahead of print)

    Article in TAG Theoretical and applied genetics

  7. Weak edge effects on trees in Bornean rainforest remnants bordering oil palm

    Anderson, J. A., McClean, C. J., Sim, S., Pettorelli, N., Jelling, A., Tangah, J. & Hill, J. K., 7 Jun 2022, (E-pub ahead of print)

    Article in Biotropica

  8. What are mycorrhizal traits?

    Chaudhary, V. B., Holland, E. P., Charman-Anderson, S., Guzman, A., Bell-Dereske, L., Cheeke, T. E., Corrales, A., Duchicela, J., Egan, C., Gupta, M. M., Hannula, S. E., Hestrin, R., Hoosein, S., Kumar, A., Mhretu, G., Neuenkamp, L., Soti, P., Xie, Y. & Helgason, T., 7 Jun 2022, (E-pub ahead of print)

    Article in Trends in Ecology & Evolution

  9. Escherichia coli Chromosome Copy Number Measurement Using Flow Cytometry Analysis

    Hawkins, M. S., 31 May 2022, (E-pub ahead of print) Chromosome Architecture. 2nd ed. p. 145-153 (Methods in Molecular Biology; vol. 2476).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  10. The effects of prenatal smoke exposure on language development- a systematic review

    Peixinho, J., Toseeb, U., Mountford, H. S., Bermudez, I. & Newbury, D. F., 6 May 2022, (E-pub ahead of print)

    Article in Infant and child development

  11. Dataset of high-throughput ligand screening against the RNA Packaging Signals regulating Hepatitis B Virus nucleocapsid formation

    Abulwerdi, F., Fatehi Chenar, F., Manfield, I., Le Grice, S., Schneekloth, Jr., J. S., Twarock, R., Stockley, P. G. & Patel, N., 29 Apr 2022, (E-pub ahead of print)

    Article in Data in Brief

  12. Parallel Optimisation of Potency and Pharmacokinetics Leading to the Discovery of a Pyrrole Carboxamide ERK5 Chemical Tool

    Miller, D. C., Reuillon, T., Molyneux, L., Blackburn, T. J., Cook, S., Edwards, N., Endicott, J. A., Golding, B. T., Griffin, R. J., Hardcastle, I. R., Heptinstall, A. B., Lochhead, P., Martin, M. P., Martin, N., Myers, S. M., Newell, D. R., Noble, R., Rigoreau, L. J. M., Thomas, H., Tucker, J. A. & 6 others, Wang, L-Z., Waring, M. J., Wong, A-C., Wedge, S., Noble, M. & Cano, C., 25 Apr 2022, (E-pub ahead of print)

    Article in JOURNAL OF MEDICINAL CHEMISTRY

  13. Sodium accumulation in breast cancer predicts malignancy and treatment response

    James, A. D., Leslie, T. K., Kaggie, J. D., Wiggins, L., Patten, L., Murphy O'Duinn, J., Langer, S., Labarthe, M-C., Riemer, F., Baxter, G., McLean, M. A., Gilbert, F. J., Kennerley, A. J. & Brackenbury, W. J., 25 Apr 2022, (E-pub ahead of print)

    Article in British journal of cancer

  14. A systematic map of demographic data from elephant populations across Africa: implications for poaching and population analyses

    Hauenstein, S., Jassoy, N., Mupepele, A-C., Carroll, T., Kshatriya, M., Beale, C. M. & Dormann, C. F., 19 Apr 2022, (E-pub ahead of print)

    Letter in Mammal Review

  15. In silico Docking Analysis for Blocking JUNO‐IZUMO1 Interaction Identifies Two Small Molecules that Block in vitro Fertilization

    Stepanenko, N., Wolk, O., Bianchi, E., Wright, G. J., Schachter-Safrai, N., Makedonski, K., Ouro, A., Ben-Meir, A., Buganim, Y. & Goldblum, A., 5 Apr 2022, (E-pub ahead of print)

    Article in Frontiers in cell and developmental biology

  16. CRISPR/Cas9-based precision tagging of essential genes in bloodstream form African trypanosomes

    Kovářová, J., Novotná, M., Faria, J., Rico, E., Wallace, C., Zoltner, M., Field, M. C. & Horn, D., 1 Apr 2022, (E-pub ahead of print)

    Article in MOLECULAR AND BIOCHEMICAL PARASITOLOGY

  17. Meta-analysis of diazotrophic signatures across terrestrial ecosystems at the continental scale

    Zhu, C., Friman, V-P., Li, L., Xu, Q., Guo, J., Guo, S., Shen, Q. & Ling, N., 1 Apr 2022, (E-pub ahead of print)

    Article in Environmental Microbiology

  18. Plant metabolic gene clusters in the multi-omics era

    Zhan, C., Shen, S., Yang, C., Liu, Z., Fernie, A., Graham, I. A. & Luo, J., 30 Mar 2022, (E-pub ahead of print)

    Review article in TRENDS IN PLANT SCIENCE

  19. Dysregulation of Hepatitis B Virus Nucleocapsid Assembly in vitro by RNA-binding Small Ligands

    Patel, N., Abulwerdi, F., Fatehi Chenar, F., Manfield, I., Le Grice, S., Schneekloth, Jr., J. S., Twarock, R. & Stockley, P. G., 24 Mar 2022, (E-pub ahead of print)

    Article in Journal of Molecular Biology

  20. Prion-like domains drive CIZ1 assembly formation at the inactive X chromosome

    Sofi, S., Williamson, L., Turvey, G., Scoynes, C., Hurst, C., Godwin, J., Brockdorff, N., Ainscough, J. & Coverley, D. A., 15 Mar 2022, (E-pub ahead of print)

    Article in Journal of Cell Biology

  21. No evidence for trade-offs between bird diversity, yield and water table depth on oil palm smallholdings: implications for tropical peatland landscape restoration

    Warren-Thomas, E. M., Agus, F., Akbar, P. G., Crowson, M., Hamer, K. C., Hariyadi, B., Hodgson, J. A., Kartika, W. D., Lopes, M., Lucey, J. M., Mustaqim, D., Pettorelli, N., Saad, A., Sari, W., Sukma, G., Stringer, L., Ward, C. & Hill, J. K., 14 Mar 2022, (E-pub ahead of print)

    Article in Journal of Applied Ecology

  22. Multi-omic based production strain improvement (MOBpsi) for bio-manufacturing of toxic chemicals

    Webb, J. P., Paiva, A. C., Rossoni, L., Alstrom-Moore, A., Springthorpe, V., Vaud, S., Yeh, V., Minde, D-P., Langer, S., Walker, H., Hounslow, A., Nielsen, D. R., Larson, T., Lilley, K., Stephens, G., Thomas, G. H., Bonev, B. B., Kelly, D. J., Conradie, A. & Green, J., 11 Mar 2022, (E-pub ahead of print)

    Article in Metabolic engineering

  23. Inflammatory Caspases: Toward a Unified Model for Caspase Activation by Inflammasomes

    Ross, C., Chan, A. H., von Pein, J. B., Maddugoda, M. P., Boucher, D. & Schroder, K., 26 Jan 2022, (E-pub ahead of print)

    Review article in Annual review of immunology

  24. The effect of age, sex, and resource abundance on patterns of rake markings in resident killer whales (Orcinus orca)

    Grimes, C., Brent, L. JN., Weiss, M. N., Franks, D. W., Balcomb, K. C., Ellifrit, D. K., Ellis, S. & Croft, D. P., 24 Jan 2022, (E-pub ahead of print)

    Article in Marine Mammal Science

  25. Organochlorine contamination enriches virus-encoded metabolism and pesticide degradation associated auxiliary genes in soil microbiomes

    Zheng, X., Jahn, M. T., Sun, M., Friman, V-P., Balcazar, J. L., Wang, J., Shi, Y., Gong, X., Hu, F. & Zhu, Y-G., 17 Jan 2022, (E-pub ahead of print)

    Article in The ISME Journal

  26. Surface Shave: Revealing the Apical-Restricted Uroglycome

    Wang, C. Y., Bergström, E., Southgate, J. & Thomas-Oates, J., 5 Jan 2022, (E-pub ahead of print)

    Article in Journal of Proteome Research

  27. 2021
  28. Transformations to Regenerative Food Systems- An outline of the FixOurFood project

    Doherty, B., Bryant, M., Denby, K., Fazey, I. R. A., Bridle, S., Hawkes, C., Cain, M., Banwart, S., Collins, L., Pickett, K., Allen, M., Ball, P. D., Gardner, G. E., Carmen, E., Sinclair, M., Kluczkovski, A., Ehgartner, U., Morris, B., James, A., Yap, C. & 2 others, Om, S. & Connolly, A., 12 Dec 2021, (E-pub ahead of print)

    Article in Nutrition Bulletin

  29. Anthropogenic pressures coincide with Neotropical biodiversity hotspots in a flagship butterfly group

    Doré, M., Willmott, K., Leroy, B., Chazot, N., Mallet, J., Freitas, A. V. L., Hall, J. P. W., Lamas, G., Dasmahapatra, K. K., Fontaine, C. & Elias, M., 9 Dec 2021, (E-pub ahead of print)

    Article in Diversity and Distributions

  30. Glial Nrf2 signaling mediates the neuroprotection exerted by Gastrodia elata Blume in Lrrk2-G2019S Parkinson's disease

    Lin, Y-E., Lin, C-H., Ho, E-P., Ke, Y-C., Petridi, S., Elliott, C., Sheen, L-Y. & Chien, C-T., 15 Nov 2021, (E-pub ahead of print)

    Article in eLife

  31. Complex basis of hybrid female sterility and Haldane's rule in Heliconius butterflies: Z-linkage and epistasis

    Rosser, N. S., Edelman, N., Queste, L., Nelson, M., Seixas, F., Dasmahapatra, K. K. & Mallet, J., 14 Nov 2021, (E-pub ahead of print)

    Article in Molecular Ecology

  32. Accuracy and Power Analysis of Social Networks Built From Count Data

    Hart, J. D. A., Franks, D. W., Brent, L. J. N. & Weiss, M. N., 16 Oct 2021, (E-pub ahead of print)

    Article in Methods in ecology and evolution

  33. Introduction of probiotic bacterial consortia promotes plant growth via impacts on the resident rhizosphere microbiome

    Hu, J., Yang, T., Friman, V-P., Kowalchuk, G. A., Hautier, Y., Li, M., Wei, Z., Xu, Y., Shen, Q. & Jousset, A., 13 Oct 2021, (E-pub ahead of print)

    Article in Proceedings of the Royal Society B

  34. Early reduction in PD-L1 expression predicts faster treatment response in human cutaneous leishmaniasis

    Dey, N. S., Senaratne, S., Somaratne, V., Madarasinghe, N. P., Seneviratne, B., Forrester, S., Montes de Oca, M., Reis, L. C., Moulik, S., Walrad, P. B., Chatterjee, M., Goto, H., Wickremasinghe, R., Lagos, D., Kaye, P. M. & Ranasinghe, S., 5 Oct 2021, (E-pub ahead of print)

    Article in Journal of Clinical Investigation

  35. Bone Marrow Remodelling Supports Hematopoiesis in Response to Immune Thrombocytopenia Progression

    Herd, O., Rani, G. F., Hewitson, J. P., Hogg, K., Stone, A., Cooper, N., Kent, D. G., Genever, P. & Hitchcock, I. S., 24 Aug 2021, (E-pub ahead of print)

    Article in Blood Advances

  36. Kinship Dynamics: Patterns and Consequences of Changes in Local Relatedness

    Croft, D. P., Weiss, M. N., Nielsen, M. L. K., Grimes, C., Cant, M. A., Ellis, S., Franks, D. W. & Johnstone, R. A., 18 Aug 2021, (E-pub ahead of print)

    Article in Proceedings of the Royal Society B

  37. Secreted pectin monooxygenases drive plant infection by pathogenic oomycetes

    Sabbadin, F., Urresti, S., Henrissat, B., Avrova, A. O., Welsh, L. R. J., Lindley, P., Csukai, M., Squires, J. N., Walton, P. H., Davies, G. J., Bruce, N. C., Whisson, S. C. & McQueen Mason, S. J., 13 Aug 2021, (E-pub ahead of print)

    Article in Science

  38. Proximity to forest mediates trade-offs between yields and biodiversity of birds in oil palm smallholdings

    Hamer, K. C., Sasu, M. A., Ofosuhene, L., Asare, R., Ossom, B., Parr, C. L., Scriven, S. A-L., Asante, W., Addico, R. & Hill, J. K., 18 Jul 2021, (E-pub ahead of print)

    Article in Biotropica

  39. Airborne and indigenous microbiomes co-drive the rebound of antibiotic resistome during compost storage

    Liao, H., Bai, Y., Liu, C., Wen, C., Yang, Q., Chen, Z., Banerjee, S., Zhou, S. & Friman, V-P., 14 Jul 2021, (E-pub ahead of print)

    Article in Environmental Microbiology

  40. Rapid compensatory evolution can rescue low fitness symbioses following partner-switching

    Sørensen, M. E. S., Wood, A. J., Cameron, D. D. & Brockhurst, M., 12 Jul 2021, (E-pub ahead of print)

    Article in Current Biology

  41. The kinesin of the flagellum attachment zone in Leishmania is required for cell morphogenesis, cell division and virulence in the mammalian host

    Corrales, R. M., Vaselek, S., Neish, R., Berry, L., Brunet, C., Crobu, L., Kuk, N., Mateos-Langerak, J., Robinson, D. R., Volf, P., Mottram, J. C., Sterkers, Y. & Bastien, P., 18 Jun 2021, (E-pub ahead of print)

    Article in PLOS PATHOGENS

  42. A long postreproductive life span is a shared trait among genetically distinct killer whale populations

    Nielsen, M., Ellis, S., Towers, J., Doniol-Valcroze, T., Franks, D. W., Cant, M., Weiss, M., Johnstone, R. A., Balcomb, K. C., Ellifrit, D. K. & Croft, D., 16 Jun 2021, (E-pub ahead of print)

    Article in Ecology and Evolution

  43. Validation of IMS-MS as a screening tool to identify type II kinase inhibitors of FGFR1 kinase

    Beeston, H., Klein, T., Norman, R., Tucker, J. A., Anderson, M., Ashcroft, A. E. & Holdgate, G., 26 May 2021, (E-pub ahead of print)

    Article in Rapid Communications in Mass Spectrometry

  44. 17-AAG-induced activation of the autophagic pathway in Leishmania is associated with parasite death

    Petersen, A. L. D. O. A., Cull, B., Simões Dias, B. R., Palma, L. C., da Silva Luz, Y., de Menezes, J. P. B., Mottram, J. C. & Veras, P. S. T., 19 May 2021, (E-pub ahead of print)

    Article in Microorganisms

  45. A chromosome-level Amaranthus cruentus genome assembly highlights gene family evolution and biosynthetic gene clusters that may underpin the nutritional value of this traditional crop

    Ma, X., Vaistij, F. E., Li, Y., Jansen van Rensburg, W. S., Harvey, S. E., Bairu, M. W., Venter, S. L., Mavengahama, S., Ning, Z., Graham, I. A., Van Deynze, A., Van de Peer, Y. & Denby, K., 7 May 2021, (E-pub ahead of print)

    Article in The Plant journal

  46. Nest choice in arboreal ants is an emergent consequence of network creation under spatial constraints

    Chang, J., Powell, S., Robinson, E. J. H. & Donaldson-Matasci, M. C., 24 Apr 2021, (E-pub ahead of print)

    Article in Swarm Intelligence

  47. The relative importance of soil moisture in predicting bacterial wilt disease occurrence

    Jiang, G., Ningqi, W., Yaoyu, Z., Wang, Z., Zhang, Y., Yu, J., Zhang, Y., Wei, Z., Xu, Y-C., Geisen, S., Friman, V-P. & Shen, Q., 15 Apr 2021, (E-pub ahead of print)

    Article in Soil Ecology Letters

  48. Zinc-dependent multimerization of mutant calreticulin is required for MPL binding and MPN pathogenesis

    Rivera, J. F., Baral, A. J., Nadat, F., Boyd, G., Smyth, R., Patel, H., Burman, E. L., Alameer, G., Boxall, S. A., Jackson, B. R., Baxter, J., Laslo, P., Green, A. R., Kent, D. G., Mullally, A. & Chen, E., 5 Apr 2021, (E-pub ahead of print)

    Article in Blood Advances

  49. Presynaptic accumulation of α-synuclein causes synaptopathy and progressive neurodegeneration in Drosophila

    Bridi, J. C., Bereczki, E., Smith, S. K., Pocas, G. M., Kottler, B., Domingos, P. M., Elliott, C., Aarsland, D. & Hirth, F., 22 Mar 2021, (E-pub ahead of print)

    Article in Brain Communications

  50. Dissecting pathways to thrombocytopenia in a mouse model of visceral leishmaniasis

    Rani, G. F., Preham, O., Ashwin, H., Brown, N., Hitchcock, I. S. & Kaye, P. M., 12 Mar 2021, (E-pub ahead of print)

    Article in Blood Advances

  51. Substrate anchoring and flexibility reduction in CYP153AM.aq leads to highly improved activity towards octanoic acid

    Grogan, G. J., Rowlinson, B., Sharma, M., Zukic, E., Hauer, B., Rapp, L., Marques, S. & Damborsky, J., 24 Feb 2021, (E-pub ahead of print)

    Article in ACS Catalysis

  52. Herbicide selection promotes antibiotic resistance in soil microbiomes

    Liao, H., Li, X., Yang, Q., Bai, Y., Cui, P., Wen, C., Liu, C., Chen, Z., Tang, J., Che, J., Yu, Z., Geisen, S., Zhou, S., Friman, V-P. & Zhu, Y-G., 16 Feb 2021, (E-pub ahead of print)

    Article in Molecular Biology and Evolution

  53. Single-molecule FRET dynamics of molecular motors in an ABEL Trap

    Dienerowitz, M., Howard, J. A. L., Quinn, S., Dienerowitz, F. & Leake, M. C., 9 Feb 2021, (E-pub ahead of print)

    Article in Methods

  54. A recombineering pipeline to clone large and complex genes in Chlamydomonas

    Emrich-Mills, T. Z., Yates, G., Barrett, J., Girr, P., Grouneva, I., Lau, C. S., Walker, C. E., Kwok, T. K., Davey, J. W., Johnson, M. P. & Mackinder, L., 2 Feb 2021, (E-pub ahead of print)

    Article in The Plant Cell

  55. Autophagy inhibition rescues structural and functional defects caused by the loss of mitochondrial chaperone Hsc70-5 in Drosophila

    Zhu, J., Hannan, S. B., Dräger, N. M., Vereshchagina, N., Krahl, A-C., Fu, Y., Elliott, C., Han, Z., Jahn, T. R. & Rasse, T. M., 25 Jan 2021, (E-pub ahead of print)

    Article in Autophagy

  56. The preservation of ancient DNA in archaeological fish bone

    Ferrari, G., Cuevas, A., Gondek-Wyrozemska, A. T., Ballantyne, R., Kersten, O., Pálsdóttir, A. H., van der Jagt, I., Hufthammer, A. K., Ystgaard, I., Wickler, S., Bigelow, G. F., Harland, J., Nicholson, R., Orton, D., Clavel, B., Boessenkool, S., Barrett, J. H. & Star, B., 9 Jan 2021, (E-pub ahead of print)

    Article in Journal of archaeological science

  57. 2020
  58. Triggering Closure of a Sialic Acid TRAP Transporter Substrate Binding Protein through Binding of Natural or Artificial Substrates

    Peter, M. F., Gebhardt, C., Glaenzer, J., Schneberger, N., de Boer, M., Thomas, G. H., Cordes, T. & Hagelueken, G., 28 Dec 2020, (E-pub ahead of print)

    Article in Journal of Molecular Biology

  59. Overcoming the trade-off between grain weight and number in wheat by the ectopic expression of expansin in developing seeds leads to increased yield potential

    Calderini, D. F., Castillo, F. M. C., Arenas-M, A., Molero, G., Reynolds, M. P., Craze, M., Bowden, S., Milner, M. J., Wallington, E. J., Dowle, A., Gomez, L. D. & McQueen Mason, S. J., 4 Dec 2020, (E-pub ahead of print)

    Article in The New phytologist

  60. Insect egg-induced physiological changes and transcriptional reprogramming leading to gall development

    Oates, C. N., Denby, K., Myburg, A. A., Slippers, B. & Naidoo, S., 18 Nov 2020, (E-pub ahead of print)

    Article in Plant, Cell and Environment

  61. Find and fuse: Unsolved mysteries in sperm– egg recognition

    Bianchi, E. & Wright, G. J., 13 Nov 2020, (E-pub ahead of print)

    Article in PLoS Biology

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