Search research publications and outputs

  1. miR-25 modulates invasiveness and dissemination of human prostate cancer cells via regulation of αv- and α6 integrin expression

    Zoni, E., van der Horst, G., van de Merbel, A. F., Chen, L., Rane, J. K., Pelger, R. C. M., Collins, A. T., Visakorpi, T., Snaar-Jagalska, B. E., Maitland, N. J. & van der Pluijm, G., 9 Apr 2015, (E-pub ahead of print)

    Article in Cancer research

  2. cis-12-oxo-phytodienoic acid represses Arabidopsis thaliana seed germination in shade light conditions

    Barros Galvão, T., Dave, A., Cole, A. F., Harvey, D., Langer, S., Larson, TR., Vaistij, F. E. & Graham, I. A., 20 Jul 2019, (E-pub ahead of print)

    Article in Journal of Experimental Botany

  3. Zinc-dependent multimerization of mutant calreticulin is required for MPL binding and MPN pathogenesis

    Rivera, J. F., Baral, A. J., Nadat, F., Boyd, G., Smyth, R., Patel, H., Burman, E. L., Alameer, G., Boxall, S. A., Jackson, B. R., Baxter, J., Laslo, P., Green, A. R., Kent, D. G., Mullally, A. & Chen, E., 5 Apr 2021, (E-pub ahead of print)

    Article in Blood Advances

  4. What are mycorrhizal traits?

    Chaudhary, V. B., Holland, E. P., Charman-Anderson, S., Guzman, A., Bell-Dereske, L., Cheeke, T. E., Corrales, A., Duchicela, J., Egan, C., Gupta, M. M., Hannula, S. E., Hestrin, R., Hoosein, S., Kumar, A., Mhretu, G., Neuenkamp, L., Soti, P., Xie, Y. & Helgason, T., 7 Jun 2022, (E-pub ahead of print)

    Article in Trends in Ecology & Evolution

  5. Weak edge effects on trees in Bornean rainforest remnants bordering oil palm

    Anderson, J. A., McClean, C. J., Sim, S., Pettorelli, N., Jelling, A., Tangah, J. & Hill, J. K., 7 Jun 2022, (E-pub ahead of print)

    Article in Biotropica

  6. Wading through the swamp: what does tropical peatland restoration mean to national level stakeholders in Indonesia?

    Ward, C. F. M., Stringer, L. C., Warren-Thomas, E. M., Agus, F., Hamer, K. C., Pettorelli, N., Hariyadi, B., Hodgson, J., Kartika, W. D., Lucey, J. M., McClean, C. J., Hill, J. K., Nurida, N. L. & Saad, A., 30 Jul 2020, (E-pub ahead of print)

    Article in Restoration Ecology

  7. Variation in hemolysin A expression between uropathogenic Escherichia coli isolates determines NLRP3-dependent vs. -independent macrophage cell death and host colonization

    Murthy, A. M. V., Sullivan, M. J., Nhu, N. T. K., Lo, A. W., Phan, M-D., Peters, K. M., Boucher, D., Schroder, K., Beatson, S. A., Ulett, G. C., Schembri, M. A. & Sweet, M. J., 14 Mar 2019, (E-pub ahead of print)

    Article in The FASEB Journal

  8. Validation of IMS-MS as a screening tool to identify type II kinase inhibitors of FGFR1 kinase

    Beeston, H., Klein, T., Norman, R., Tucker, J. A., Anderson, M., Ashcroft, A. E. & Holdgate, G., 26 May 2021, (E-pub ahead of print)

    Article in Rapid Communications in Mass Spectrometry

  9. Triggering Closure of a Sialic Acid TRAP Transporter Substrate Binding Protein through Binding of Natural or Artificial Substrates

    Peter, M. F., Gebhardt, C., Glaenzer, J., Schneberger, N., de Boer, M., Thomas, G. H., Cordes, T. & Hagelueken, G., 28 Dec 2020, (E-pub ahead of print)

    Article in Journal of Molecular Biology

  10. Transmission traits of malaria parasites within the mosquito: Genetic variation, phenotypic plasticity, and consequences for control

    Lefevre, T., Ohm, J., Dabiré, K. R., Cohuet, A., Choisy, M., Thomas, M. B. & Cator, L., 16 Dec 2017, (E-pub ahead of print)

    Article in Evolutionary applications

  11. Thinking (in) complexity: (In) definitions and (mis)conceptions

    Teixeira de Melo, A., Caves, L. S. D., Dewitt, A., Clutton, E., Macpherson, R. & Garnett, P., 22 Jul 2019, (E-pub ahead of print)

    Article in Systems Research and Behavioral Science

  12. Thermal biology of mosquito-borne disease

    Mordecai, E. A., Caldwell, J. M., Grossman, M. K., Lippi, C. A., Johnson, L. R., Neira, M., Rohr, J. R., Ryan, S. J., Savage, V., Shocket, M. S., Sippy, R., Stewart Ibarra, A. M., Thomas, M. B. & Villena, O., 8 Jul 2020, (E-pub ahead of print)

    Review article in Ecology Letters

  13. The role of acroblast formation during Drosophila spermatogenesis

    Fari, K., Takacs, S., Ungar, D. & Sinka, R., 1 Aug 2016, (E-pub ahead of print)

    Article in Open Biology

  14. The relative importance of soil moisture in predicting bacterial wilt disease occurrence

    Jiang, G., Ningqi, W., Yaoyu, Z., Wang, Z., Zhang, Y., Yu, J., Zhang, Y., Wei, Z., Xu, Y-C., Geisen, S., Friman, V-P. & Shen, Q., 15 Apr 2021, (E-pub ahead of print)

    Article in Soil Ecology Letters

  15. The preservation of ancient DNA in archaeological fish bone

    Ferrari, G., Cuevas, A., Gondek-Wyrozemska, A. T., Ballantyne, R., Kersten, O., Pálsdóttir, A. H., van der Jagt, I., Hufthammer, A. K., Ystgaard, I., Wickler, S., Bigelow, G. F., Harland, J., Nicholson, R., Orton, D., Clavel, B., Boessenkool, S., Barrett, J. H. & Star, B., 9 Jan 2021, (E-pub ahead of print)

    Article in Journal of archaeological science

  16. The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea

    Olsen, J. L., Rouzé, P., Verhelst, B., Lin, Y-C., Bayer, T., Collen, J., Dattolo, E., De Paoli, E., Dittami, S., Maumus, F., Michel, G., Kersting, A., Lauritano, C., Lohaus, R., Töpel, M., Tonon, T., Vanneste, K., Amirebrahimi, M., Brakel, J., Boström, C., & 15 othersChovatia, M., Grimwood, J., Jenkins, J. W., Jueterbock, A., Mraz, A., Stam, W. T., Tice, H., Bornberg-Bauer, E., Green, P. J., Pearson, G. A., Procaccini, G., Duarte, C. M., Schmutz, J., Reusch, T. B. H. & Van de Peer, Y., 27 Jan 2016, (E-pub ahead of print)

    Article in Nature

  17. The genome of Ectocarpus subulatus – a highly stress-tolerant brown alga

    Dittami, S. M., Corre, E., Brillet-Guéguen, L., Lipinska, A. P., Pontoizeau, N., Aite, M., Avia, K., Caron, C., Cho, C. H., Collén, J., Cormier, A., Delage, L., Doubleau, S., Frioux, C., Gobet, A., González-Navarrete, I., Groisillier, A., Hervé, C., Jollivet, D., KleinJan, H., & 16 othersLeblanc, C., Liu, X., Marie, D., Markov, G. V., Minoche, A. E., Monsoor, M., Pericard, P., Perrineau, M-M., Peters, A. F., Siegel, A., Siméon, A., Trottier, C., Yoon, H. S., Himmelbauer, H., Boyen, C. & Tonon, T., 11 Jan 2020, (E-pub ahead of print)

    Article in Marine Genomics

  18. The effects of prenatal smoke exposure on language development- a systematic review

    Peixinho, J., Toseeb, U., Mountford, H. S., Bermudez, I. & Newbury, D. F., 6 May 2022, (E-pub ahead of print)

    Article in Infant and child development

  19. The effect of microbial inoculant origin on the rhizosphere bacterial community composition and plant growth-promotion

    Gu, Y., Dong, K., Geisen, S., Yang, W., Yan, Y., Gu, D., Liu, N., Borisjuk, N., Luo, Y. & Friman, V-P., 21 May 2020, (E-pub ahead of print)

    Article in Plant and Soil

  20. The effect of lithium on the budding yeast Saccharomyces cerevisiae upon stress adaptation

    Reith, P., Braam, S., Welkenhuysen, N., Lecinski, S., Shepherd, J., MacDonald, C., Leake, M. C., Hohmann, S., Shashkova, S. & Cvijovic, M., 9 Mar 2022, (E-pub ahead of print)

    Article in Microorganisms

  21. The effect of age, sex, and resource abundance on patterns of rake markings in resident killer whales (Orcinus orca)

    Grimes, C., Brent, L. JN., Weiss, M. N., Franks, D. W., Balcomb, K. C., Ellifrit, D. K., Ellis, S. & Croft, D. P., 24 Jan 2022, (E-pub ahead of print)

    Article in Marine Mammal Science

  22. The ecology of tree reproduction in an African medium altitude rainforest

    Babweteera, F., Plumptre, A. J., Adamescu, G. S., Shoo, L. P., Beale, C. M., Reynolds, V., Nyeko, P. & Muhanguzi, G., 16 May 2018, (E-pub ahead of print)

    Article in Biotropica

  23. The WRKY6 transcription factor affects seed oil accumulation and alters fatty acid compositions in Arabidopsis thaliana

    Song, G., Li, X., Munir, R., Khan, A. R., Azhar, W., Yasin, M. U., Jiang, Q., Bancroft, I. & Gan, Y., 14 Mar 2020, (E-pub ahead of print)

    Article in Physiologia plantarum

  24. The Salmonella pathogenicity island-2 subverts human NLRP3 and NLRC4 inflammasome responses

    Bierschenk, D., Monteleone, M., Moghaddas, F., Baker, P. J., Masters, S. L., Boucher, D. & Schroder, K., 4 Oct 2018, (E-pub ahead of print)

    Article in Journal of leukocyte biology

  25. The Salmonella enterica serovar Typhimurium virulence factor STM3169 is a hexuronic acid binding protein component of a TRAP transporter

    Herman, R., Bennett-Ness, C., Maqbool, A., Afzal, A., Leech, A. & Thomas, G. H., 7 Sep 2020, (E-pub ahead of print)

    Article in Microbiology

  26. The Rib domain: Defining the remarkable structural malleability of a bacterial surface protein domain implicated in infection

    Whelan, F., Lafita, A., Griffiths, S. C., Cooper, R., Whittingham, J. L., Turkenburg, J. P., Manfield, I. W., St John, A. N., Paci, E., Bateman, A. & Potts, J. R., 9 Dec 2019, (E-pub ahead of print)

    Article in Proceedings of the National Academy of Sciences of the United States of America

  27. The Mechanism of Vesicle Solubilization by the Detergent Sodium Dodecyl Sulfate

    Juan-Colas, J., Dresser, L., Morris, K., Lagadou, H., Ward, R. H., Burns, A., Tear, S., Johnson, S. D., Leake, M. C. & Quinn, S., 21 Sep 2020, (E-pub ahead of print)

    Article in Langmuir

  28. The Amazon river is a suture zone for a polyphyletic group of co-mimetic heliconiine butterflies

    Rosser, N., Shirai, L. T., Dasmahapatra, K. K., Mallet, J. & Freitas, A. V. L., 10 Nov 2020, (E-pub ahead of print)

    Article in Ecography

  29. Th17-cell plasticity in Helicobacter hepaticus-induced intestinal inflammation

    Morrison, P. J., Bending, D., Fouser, L. A., Wright, J. F., Stockinger, B., Cooke, A. & Kullberg, M. C., 6 Mar 2013, (E-pub ahead of print)

    Article in Mucosal Immunology

  30. Techno-economic analysis of bio-methane production from agriculture and food industry waste

    Oreggioni, G. D., Luberti, M., Reilly, M., Kirby, M. E., Toop, T., Theodorou, M. & Tassou, S. A., 19 Sep 2017, (E-pub ahead of print)

    Conference article in Energy Procedia

  31. Systems Analyses Reveal the Resilience of Escherichia coli Physiology during Accumulation and Export of the Nonnative Organic Acid Citramalate

    Webb, J., Springthorpe, V. J., Rossoni, L., Minde, D-P., Langer, S., Walker, H., Alstrom-Moore, A., Larson, T., Lilley, K. S., Eastham, G., Stephens, G., Thomas, G. H., Kelly, D. J. & Green, J., 11 Jun 2019, (E-pub ahead of print)

    Article in mSphere

  32. Surface Shave: Revealing the Apical-Restricted Uroglycome

    Wang, C. Y., Bergström, E., Southgate, J. & Thomas-Oates, J., 5 Jan 2022, (E-pub ahead of print)

    Article in Journal of Proteome Research

  33. Supramolecular assemblies underpin turnover of outer membrane proteins in bacteria

    Rassam, P., Copeland, N. A., Birkholz, O., Tóth, C., Chavent, M., Duncan, A. L., Cross, S. J., Housden, N. G., Kaminska, R., Seger, U., Quinn, D. M., Garrod, T. J., Sansom, M. S. P., Piehler, J., Baumann, C. G. & Kleanthous, C., 10 Jun 2015, (E-pub ahead of print)

    Article in Nature

  34. Substrate anchoring and flexibility reduction in CYP153AM.aq leads to highly improved activity towards octanoic acid

    Grogan, G. J., Rowlinson, B., Sharma, M., Zukic, E., Hauer, B., Rapp, L., Marques, S. & Damborsky, J., 24 Feb 2021, (E-pub ahead of print)

    Article in ACS Catalysis

  35. Sublethal effects of mixed fungal infections on the Moroccan locust, Dociostaurus maroccanus

    Valverde-Garcia, P., Santiago-Álvarez, C., Thomas, M. B., Maranhao, E. A. A., Garrido-Jurado, I. & Quesada-Moraga, E., 28 Dec 2018, (E-pub ahead of print)

    Article in Journal of invertebrate pathology

  36. Study of backward terahertz radiation from intense picosecond laser-solid interactions using a multichannel calorimeter system

    Liu, H., Liao, G. Q., Zhang, Y. H., Zhu, B. J., Zhang, Z., Li, Y. T., Scott, G. G., Rusby, D., Armstrong, C., Zemaityte, E., Bradford, P., Woolsey, N., Huggard, P., McKenna, P. & Neely, D., 22 Jan 2019, (E-pub ahead of print)

    Article in High Power Laser Science and Engineering

  37. Structural basis of DNA packaging by a ring-type ATPase from an archetypal viral system

    Fung, H. K. H., Grimes, S., Huet, A., Duda, R. L., Chechik, M., Gault, J., Robinson, C. V., Hendrix, R. W., Jardine, P. J., Conway, J. F., Baumann, C. G. & Antson, A. A., 10 Aug 2022, (E-pub ahead of print)

    Article in Nucleic Acids Research

  38. Sodium homeostasis in the tumour microenvironment

    Leslie, T. K., James, A. D., Zaccagna, F., Grist, J. T., Deen, S., Kennerley, A. J., Riemer, F., Kaggie, J. D., Gallagher, F. A., Gilbert, F. J. & Brackenbury, W. J., 23 Jul 2019, (E-pub ahead of print)

    Article in BBA - Reviews on Cancer

  39. Sodium accumulation in breast cancer predicts malignancy and treatment response

    James, A. D., Leslie, T. K., Kaggie, J. D., Wiggins, L., Patten, L., Murphy O'Duinn, J., Langer, S., Labarthe, M-C., Riemer, F., Baxter, G., McLean, M. A., Gilbert, F. J., Kennerley, A. J. & Brackenbury, W. J., 25 Apr 2022, (E-pub ahead of print)

    Article in British journal of cancer

  40. Single-molecule FRET dynamics of molecular motors in an ABEL Trap

    Dienerowitz, M., Howard, J. A. L., Quinn, S., Dienerowitz, F. & Leake, M. C., 9 Feb 2021, (E-pub ahead of print)

    Article in Methods

  41. Siderophore-mediated interactions determine the disease suppressiveness of microbial consortia

    Gu, S., Yang, T., Shao, Z., Cao, K., Jousset, A., Friman, V-P., Mallon, C., Mei, X., Wei, Z., Xu, Y., Shen, Q. & Pommier, T., 30 Jun 2020, (E-pub ahead of print)

    Article in American Society for Microbiology

  42. Short and long term effects of UV-A on Arabidopsis are mediated by a novel cGMP phosphodiesterase

    Isner, J-C. E. F., Olteanu, V-A., Hetherington, A. J., Coupel-Ledru, A., Sun, P., Pridgeon, A. J., Jones, G. S., Oates, M., Williams, T. A., Maathuis, F. J. M., Kift, R., Webb, A. R., Gough, J., Franklin, K. A. & Hetherington, A., 25 Jul 2019, (E-pub ahead of print)

    Article in Current Biology

  43. SerraNA: a program to determine nucleic acids elasticity from simulation data

    Velasco Berrelleza, V., Burman, M., Shepherd, J., Leake, M. C., Golestanian, R. & Noy, A., 17 Aug 2020, (E-pub ahead of print)

    Article in Physical Chemistry Chemical Physics

  44. Secreted pectin monooxygenases drive plant infection by pathogenic oomycetes

    Sabbadin, F., Urresti, S., Henrissat, B., Avrova, A. O., Welsh, L. R. J., Lindley, P., Csukai, M., Squires, J. N., Walton, P. H., Davies, G. J., Bruce, N. C., Whisson, S. C. & McQueen Mason, S. J., 13 Aug 2021, (E-pub ahead of print)

    Article in Science

  45. Salmonella-induced inflammasome activation in humans

    Bierschenk, D., Boucher, D. & Schroder, K., 11 Dec 2016, (E-pub ahead of print)

    Review article in Molecular immunology

  46. STAT1 is essential for HSC function and maintains MHCIIhi stem cells that resists myeloablation and neoplastic expansion

    Li, J., Williams, M. J., Park, H. J., Bastos, H. P., Wang, X., Prins, D. P., Wilson, N. K., Johnson, C., Sham, K., Wantoch, M., Watcham, S., Kinston, S. J., Pask, D. C., Hamilton, T. L., Sneade, R., Waller, A. K., Ghevaert, C., Vassiliou, G. S., Laurenti, E., Kent, D. G., & 2 othersGottgens, B. & Green, A. R., 29 Jun 2022, (E-pub ahead of print)

    Article in Blood

  47. Role for the flagellum attachment zone in Leishmania anterior cell tip morphogenesis

    Halliday, C., Yanase, R., Catta-Preta, C. M. C., Moreira-Leite, F., Myskova, J., Pruzinova, K., Volf, P., Mottram, J. C. & Sunter, J. D., 22 Oct 2020, (E-pub ahead of print)

    Article in PLOS PATHOGENS

  48. Rhizosphere immunity: targeting the underground for sustainable plant health management

    Wei, Z., Friman, V-P., Pommier, T., Geisen, S., Jousset, A. & Shen, Q., 11 Jun 2020, (E-pub ahead of print)

    Article in Frontiers of Agricultural Science and Engineering

  49. Rethinking the extrinsic incubation period of malaria parasites

    Ohm, J. R., Baldini, F., Barreaux, P., Lefevre, T., Lynch, P. A., Suh, E., Whitehead, S. A. & Thomas, M. B., 12 Mar 2018, (E-pub ahead of print)

    Review article in Parasites and Vectors

  50. Recommendations for empowering early career researchers to improve research culture and practice

    Kent, B. A., Holman, C., Amoako, E., Antonietti, A., Azam, J. M., Ballhausen, H., Bediako, Y., Belasen, A. M., Carneiro, C. F. D., Chen, Y-C., Compeer, E. B., Connor, C. A. C., Crüwell, S., Debat, H., Dorris, E., Ebrahimi, H., Erlich, J. C., Fernández-Chiappe, F., Fischer, F., Gazda, M. A., & 28 othersGlatz, T., Grabitz, P., Heise, V., Kent, D. G., Lo, H., McDowell, G., Mehta, D., Neumann, W-J., Neves, K., Patterson, M., Penfold, N. C., Piper, S. K., Puebla, I., Quashie, P. K., Quezada, C. P., Riley, J. L., Rohmann, J. L., Saladi, S., Schwessinger, B., Siegerink, B., Stehlik, P., Tzilivaki, A., Umbers, K. D. L., Varma, A., Walavalkar, K., de Winde, C. M., Zaza, C. & Weissgerber, T. L., 7 Jul 2022, (E-pub ahead of print)

    Article in PLoS Biology

  51. Recent advances in ancient DNA research and their implications for archaeobotany

    Brown, T. A., Cappellini, E., Kistler, L., Lister, D. L., Oliveira, H. R., Wales, N. & Schlumbaum, A., 7 Oct 2014, (E-pub ahead of print)

    Review article in Vegetation History and Archaeobotany

  52. Rapid compensatory evolution can rescue low fitness symbioses following partner-switching

    Sørensen, M. E. S., Wood, A. J., Cameron, D. D. & Brockhurst, M., 12 Jul 2021, (E-pub ahead of print)

    Article in Current Biology

  53. QTL-seq identifies BnaFT.A02 and BnaFLC.A02 candidates for variation in vernalisation requirement and response in winter oilseed rape (Brassica napus)

    Tudor, E. H., Jones, D. M., He, Z., Bancroft, I., Trick, M., Wells, R., Irwin, J. A. & Dean, C., 23 Jun 2020, (E-pub ahead of print)

    Article in Plant biotechnology journal

  54. Proximity to forest mediates trade-offs between yields and biodiversity of birds in oil palm smallholdings

    Hamer, K. C., Sasu, M. A., Ofosuhene, L., Asare, R., Ossom, B., Parr, C. L., Scriven, S. A-L., Asante, W., Addico, R. & Hill, J. K., 18 Jul 2021, (E-pub ahead of print)

    Article in Biotropica

  55. Profiling substrate promiscuity of wild-type sugar kinases for multifluorinated monosaccharides

    Keenan, T., Parmeggiani, F., Malassis, J., Fontenelle, C., Vendeville, J-B., Offen, W. A., Both, P., Huang, K., Marchesi, A., Heyam, A. P., Young, C., Charnock, S. J., Davies, G. J., Linclau, B., Flitsch, S. L. & Fascione, M. A., 2 Jul 2020, (E-pub ahead of print)

    Article in Cell Chemical Biology

  56. Priorities for Broadening the Malaria Vector Control Tool Kit

    Barreaux, P., Barreaux, A. M. G., Sternberg, E. D., Suh, E., Waite, J. L., Whitehead, S. A. & Thomas, M. B., 28 Jun 2017, (E-pub ahead of print)

    Review article in Trends in parasitology

  57. Prion-like domains drive CIZ1 assembly formation at the inactive X chromosome

    Sofi, S., Williamson, L., Turvey, G., Scoynes, C., Hurst, C., Godwin, J., Brockdorff, N., Ainscough, J. & Coverley, D. A., 15 Mar 2022, (E-pub ahead of print)

    Article in Journal of Cell Biology

  58. Presynaptic accumulation of α-synuclein causes synaptopathy and progressive neurodegeneration in Drosophila

    Bridi, J. C., Bereczki, E., Smith, S. K., Pocas, G. M., Kottler, B., Domingos, P. M., Elliott, C., Aarsland, D. & Hirth, F., 22 Mar 2021, (E-pub ahead of print)

    Article in Brain Communications

  59. Predicting educational achievement from DNA

    Selzam, S., Krapohl, E., Von Stumm, S., O'Reilly, P. F., Rimfeld, K., Kovas, Y., Dale, P. S., Lee, J. J. & Plomin, R., 19 Jul 2016, (E-pub ahead of print)

    Article in Molecular psychiatry

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