Search research publications and outputs

  1. 17-AAG-induced activation of the autophagic pathway in Leishmania is associated with parasite death

    Petersen, A. L. D. O. A., Cull, B., Simões Dias, B. R., Palma, L. C., da Silva Luz, Y., de Menezes, J. P. B., Mottram, J. C. & Veras, P. S. T., 19 May 2021, (E-pub ahead of print)

    Article in Microorganisms

  2. A chromosome-level Amaranthus cruentus genome assembly highlights gene family evolution and biosynthetic gene clusters that may underpin the nutritional value of this traditional crop

    Ma, X., Vaistij, F. E., Li, Y., Jansen van Rensburg, W. S., Harvey, S. E., Bairu, M. W., Venter, S. L., Mavengahama, S., Ning, Z., Graham, I. A., Van Deynze, A., Van de Peer, Y. & Denby, K., 7 May 2021, (E-pub ahead of print)

    Article in The Plant journal

  3. A comparison of satellite remote sensing data fusion methods to map peat swamp forest loss in Sumatra, Indonesia

    Crowson, M., Warren-Thomas, E. M., Hill, J. K., Hariyadi, B., Agus, F., Saad, A., Hamer, K. C., Hodgson, J. A., Kartika, W. D., Lucey, J. M., McClean, C. J., Nurida, N. L., Pratiwi, E., Stringer, L. C., Ward, C. F. M. & Pettorelli, N., 10 Dec 2018, (E-pub ahead of print)

    Article in Remote Sensing in Ecology and Conservation

  4. A glycosyl transferase family 43 protein involved in xylan biosynthesis is associated with straw digestibility in Brachypodium distachyon

    Whitehead, C., Ostos Garrido, F. J., Reymond, M., Simister, R., Distelfeld, A., Atienza, S. G., Piston, F., Gomez, L. D. & Mcqueen-Mason, S. J., 25 Mar 2018, (E-pub ahead of print)

    Article in The New phytologist

  5. A long postreproductive life span is a shared trait among genetically distinct killer whale populations

    Nielsen, M., Ellis, S., Towers, J., Doniol-Valcroze, T., Franks, D. W., Cant, M., Weiss, M., Johnstone, R. A., Balcomb, K. C., Ellifrit, D. K. & Croft, D., 16 Jun 2021, (E-pub ahead of print)

    Article in Ecology and Evolution

  6. A molecular signal integration network underpinning Arabidopsis thaliana seed germination

    Xu, H., Lantzouni, O., Bruggink, T., Benjamins, R., Lanfermeijer, F., Denby, K., Schwechheimer, C. & Bassel, G. W., 6 Aug 2020, (E-pub ahead of print)

    Article in Current Biology

  7. A quantitative immunoassay for lung cancer biomarker CIZ1b in patient plasma

    Coverley, D. A., Higgins, G. S., West, D., Jackson, O. T., Dowle, A., Haslam, A., Ainscough, E., Chalkley, R. & White, J., 17 Nov 2016, (E-pub ahead of print)

    Article in Clinical Biochemistry

  8. A recombineering pipeline to clone large and complex genes in Chlamydomonas

    Emrich-Mills, T. Z., Yates, G., Barrett, J., Girr, P., Grouneva, I., Lau, C. S., Walker, C. E., Kwok, T. K., Davey, J. W., Johnson, M. P. & Mackinder, L., 2 Feb 2021, (E-pub ahead of print)

    Article in The Plant Cell

  9. A role for the OsHKT 2;1 sodium transporter in potassium use efficiency in rice.

    Hartley, T. N., Thomas, A. S. & Maathuis, F. J. M., 11 Mar 2019, (E-pub ahead of print)

    Article in Jexbot

  10. A systematic map of demographic data from elephant populations across Africa: implications for poaching and population analyses

    Hauenstein, S., Jassoy, N., Mupepele, A-C., Carroll, T., Kshatriya, M., Beale, C. M. & Dormann, C. F., 19 Apr 2022, (E-pub ahead of print)

    Letter in Mammal Review

  11. Accuracy and Power Analysis of Social Networks Built From Count Data

    Hart, J. D. A., Franks, D. W., Brent, L. J. N. & Weiss, M. N., 16 Oct 2021, (E-pub ahead of print)

    Article in Methods in ecology and evolution

  12. Adaptation of the carbamoyl-phosphate synthetase (CPS) enzyme in an extremophile fish

    White, L., Sutton, G., Shechonge, A., Day, J., Dasmahapatra, K. K. & Pownall, B., 14 Oct 2020, (E-pub ahead of print)

    Article in Royal Society Open Science

  13. Airborne and indigenous microbiomes co-drive the rebound of antibiotic resistome during compost storage

    Liao, H., Bai, Y., Liu, C., Wen, C., Yang, Q., Chen, Z., Banerjee, S., Zhou, S. & Friman, V-P., 14 Jul 2021, (E-pub ahead of print)

    Article in Environmental Microbiology

  14. An Arduino based Automatic Pressure Evaluation System (A-APES) to quantify growth of non-model anaerobes in culture

    Wilken, S. E., Leggieri, P. A., Kerdman-Andrade, C., Reilly, M., Theodorou, M. K. & O'Malley, M. A., 24 Jun 2020, (E-pub ahead of print)

    Article in AIChE Journal

  15. Anaerobic digestion of Crassulacean Acid Metabolism plants: Exploring alternative feedstocks for semi-arid lands

    Lueangwattanapong, K., Ammam, F., Mason, P. M., Whitehead, C., McQueen-Mason, S. J., Gomez, L. D., Smith, J. A. C. & Thompson, I. P., 14 Oct 2019, (E-pub ahead of print)

    Article in BIORESOURCE TECHNOLOGY

  16. Analyses of ovarian activity reveal repeated evolution of post-reproductive lifespans in toothed whales

    Ellis, S., Franks, D. W., Nattrass, S., Currie, T., Cant, M. A., Giles, D., Balcomb, K. C. & Croft, D. P., 27 Aug 2018, (E-pub ahead of print)

    Article in Scientific Reports

  17. Annual cycles are the most common reproductive strategy in African tropical tree communities

    Adamescu, G. S., Plumptre, A. J., Abernethy, K. A., Polansky, L., Bush, E. R., Chapman, C. A., Shoo, L. P., Fayolle, A., Janmaat, K. R. L., Robbins, M. M., Ndangalasi, H. J., Cordeiro, N. J., Gilby, I. C., Wittig, R. M., Breuer, T., Ndoundou-Hockemba, M., Sanz, C. M., Morgan, D. B., Pusey, A. E., Mugerwa, B. & 19 others, Gilagiza, B., Tutin, C., Ewango, C. E. N., Sheil, D., Dimoto, E., Baya, F., Bujo, F., Ssali, F., Dikangadissi, J. T., Jeffery, K. J., Valenta, K., White, L. J. T., Masozera, M., Wilson, M. L., Bitariho, R., Ndolo Ebika, S. T., Gourlet-Fleury, S., Mulindahabi, F. & Beale, C. M., 16 May 2018, (E-pub ahead of print)

    Article in Biotropica

  18. Anthropogenic pressures coincide with Neotropical biodiversity hotspots in a flagship butterfly group

    Doré, M., Willmott, K., Leroy, B., Chazot, N., Mallet, J., Freitas, A. V. L., Hall, J. P. W., Lamas, G., Dasmahapatra, K. K., Fontaine, C. & Elias, M., 9 Dec 2021, (E-pub ahead of print)

    Article in Diversity and Distributions

  19. Application of biochar reduces Ralstonia solanacearum infection via effects on pathogen chemotaxis, swarming motility, and root exudate adsorption

    Gu, Y., Hou, Y., Huang, D., Hao, Z., Wang, X., Wei, Z., Jousset, A., Tan, S., Xu, D., Shen, Q., Xu, Y. & Friman, V. P., 29 Dec 2016, (E-pub ahead of print)

    Article in Plant and Soil

  20. Assembly of the algal CO2-fixing organelle, the pyrenoid, is guided by a Rubisco-binding motif

    Meyer, M. T., Itakura, A. K., Patena, W., Wang, L., He, S., Emrich-Mills, T., Lau, C. S., Yates, G., Mackinder, L. & Jonikas, M. C., 11 Nov 2020, (E-pub ahead of print)

    Article in Science Advances

  21. Assessing the effectiveness of protected areas for conserving range-restricted rainforest butterflies in Sabah, Borneo

    Scriven, S. A-L., Williams, S. H., Ghani, M. A., Agama, A. L., Benedick, S., Brodie, J. F., Hamer, K. C., McClean, C. J., Reynolds, G. & Hill, J. K., 18 Oct 2019, (E-pub ahead of print)

    Article in Biotropica

  22. Autophagy inhibition rescues structural and functional defects caused by the loss of mitochondrial chaperone Hsc70-5 in Drosophila

    Zhu, J., Hannan, S. B., Dräger, N. M., Vereshchagina, N., Krahl, A-C., Fu, Y., Elliott, C., Han, Z., Jahn, T. R. & Rasse, T. M., 25 Jan 2021, (E-pub ahead of print)

    Article in Autophagy

  23. Bacteriophage MS2 Genomic RNA Encodes an Assembly Instruction Manual for Its Capsid

    Stockley, P. G., White, S. J., Dykeman, E. C., Rolfsson, Ó., Patel, N., Bingham, R. J., Iain, M., Amy, B., Emma, W., Rebecca, C-B., Weiss, E. U., Ranson, N. A., Tuma, R. & Twarock, R., 2 Mar 2016, (E-pub ahead of print)

    Article in Bacteriophage

  24. Biocatalytic Transfer of Pseudaminic Acid (Pse5Ac7Ac) Using Promiscuous Sialyltransferases in a Chemoenzymatic Approach to Pse5Ac7Ac Containing Glycosides

    Flack, E., Chidwick, H., Guchhait, G., Keenan, T., Budhadev, D., Huang, K., Both, P., Mas Pons, J., Ledru, H., Rui, S., Stafford, G., Shaw, J., Galan, M. C., Flitsch, S. L., Thomas, G. H. & Fascione, M. A., 21 Aug 2020, (E-pub ahead of print)

    Article in ACS Catalysis

  25. Bone Marrow Remodelling Supports Hematopoiesis in Response to Immune Thrombocytopenia Progression

    Herd, O., Rani, G. F., Hewitson, J. P., Hogg, K., Stone, A., Cooper, N., Kent, D. G., Genever, P. & Hitchcock, I. S., 24 Aug 2021, (E-pub ahead of print)

    Article in Blood Advances

  26. CRISPR/Cas9-based precision tagging of essential genes in bloodstream form African trypanosomes

    Kovářová, J., Novotná, M., Faria, J., Rico, E., Wallace, C., Zoltner, M., Field, M. C. & Horn, D., 1 Apr 2022, (E-pub ahead of print)

    Article in MOLECULAR AND BIOCHEMICAL PARASITOLOGY

  27. Calculating effect sizes in animal social network analysis

    Franks, D. W., Weiss, M. N., Silk, M. J., Perryman, R. J. Y. & Croft, D. P., 21 Jun 2020, (E-pub ahead of print)

    Article in Methods in ecology and evolution

  28. Can microclimate offer refuge to an upland bird species under climate change?

    Massimino, D., Beale, C. M., Suggitt, A., Crick, H. Q. P., Macgregor, N., Carroll, M. J., Maclean, I. M. D. & Pearce-Higgins, J. W., 18 Jul 2020, (E-pub ahead of print)

    Article in Landscape ecology

  29. Catastrophic Decline of World's Largest Primate: 80% Loss of Grauer's Gorilla (Gorilla beringei graueri) Population Justifies Critically Endangered Status

    Plumptre, A. J., Nixon, S., Kujirakwinja, D. K., Vieilledent, G., Critchlow, R., Williamson, E. A., Nishuli, R., Kirkby, A. E. & Hall, J. S., 19 Oct 2016, (E-pub ahead of print)

    Article in PLoS ONE

  30. Cell wall hydrolases act in concert during aerenchyma development in sugarcane roots

    Grandis, A., Leite, D. C. C., Tavares, E. Q. P., Arenque-Musa, B. C., Gaiarsa, J. W., Martins, M. C. M., De Souza, A. P., Gomez, L. D., Fabbri, C., Mattei, B. & Buckeridge, M. S., 13 Jun 2019, (E-pub ahead of print)

    Article in Annals of Botany

  31. Challenges and a call to action for protecting European red wood ants

    Balzani, P., Dekoninck, W., Feldhaar, H., Freitag, A., Frizzi, F., Jan Frouz, F., Masoni, A., Robinson, E. J. H., Sorvar, J. & Santini, G., 5 Aug 2022, (E-pub ahead of print)

    Article in Conservation Biology

  32. Changes in expression level of OsHKT1;5 alters activity of membrane transporters involved in K+ and Ca2+ acquisition and homeostasis in salinized rice roots

    Al Nayef, M., Solis, C., Shabala, L., Ogura, T., Chen, Z., Bose, J., Maathuis, F., Venkataraman, G., Tanoi, K., Yu, M., Zhou, M., Horie, T. & Shabala, S., 10 Jul 2020, (E-pub ahead of print)

    Article in International Journal of Molecular Sciences

  33. Characterization of flowing liquid films as a regenerating plasma mirror for high repetition-rate laser contrast enhancement

    Underwood, C. I. D., Gan, G., He, Z. H., Murphy, C. D., Thomas, A. G. R., Krushelnick, K. & Nees, J., 18 May 2020, (E-pub ahead of print)

    Article in Laser and Particle Beams

  34. Chemical structure predicts the effect of plant-derived low molecular weight compounds on soil microbiome structure and pathogen suppression

    Gu, Y., Wang, X., Yang, T., Friman, V-P., Geisen, S., Wei, Z., Xu, Y., Jousset, A. & Shen, Q., 31 Jul 2020, (E-pub ahead of print)

    Article in Functional Ecology

  35. Communal Innovations: Inspiring Neighborhoods of Hope and Advocacy

    Smith, R. A., Kim, Y., Matthews, S. A., Sternberg, E. D., Doudou, D. T. & Thomas, M. B., 2 Jul 2020, (E-pub ahead of print)

    Article in Journal of health communication

  36. Complex basis of hybrid female sterility and Haldane's rule in Heliconius butterflies: Z-linkage and epistasis

    Rosser, N. S., Edelman, N., Queste, L., Nelson, M., Seixas, F., Dasmahapatra, K. K. & Mallet, J., 14 Nov 2021, (E-pub ahead of print)

    Article in Molecular Ecology

  37. Continent-level drivers of African pyrodiversity

    Hempson, G. J., Parr, C. L., Archibald, S., Anderson, T. M., Courtney-Mustaphi, C. J., Dobson, A. P., Donaldson, J. E., Morrison, T. A., Probert, J., Beale, C. M. & Anderson, T. M., 11 Jul 2017, (E-pub ahead of print)

    Article in Ecography

  38. Coordinated regulation of core and accessory genes in the multipartite genome of Sinorhizobium fredii

    Jiao, J., Ni, M., Zhang, B., Zhang, Z., Young, J. P. W., Chan, T-F., Chen, W. X., Lam, H-M. & Tian, C. F., 24 May 2018, (E-pub ahead of print)

    Article in PLoS Genetics

  39. Crystal Structure and Activity Studies of the C11 Cysteine Peptidase from Parabacteroides merdae in the Human Gut Microbiome.

    McLuskey, K., Grewal, J., Das, D., Godzik, A., Lesley, S. A., Deacon, A. M., Coombs, G. H., Elslinger, M-A., Wilson, I. A. & Mottram, J. C., 3 Mar 2016, (E-pub ahead of print)

    Article in Journal of Biological Chemistry

  40. Cytotoxic (cis,cis-1,3,5-triaminocyclohexane)ruthenium(II)–diphosphine complexes; evidence for covalent binding and intercalation with DNA

    Wise, D. E., Gamble, A. J., Arkawazi, S., Walton, P. H., Galan, M. C., O’Hagan, M. P., Hogg, K., Marrison, J., O'Toole, P. J., Sparkes, H. A., Lynam, J. M. & Pringle, P. G., 30 Sep 2020, (E-pub ahead of print)

    Article in Dalton Transactions

  41. Dataset of high-throughput ligand screening against the RNA Packaging Signals regulating Hepatitis B Virus nucleocapsid formation

    Abulwerdi, F., Fatehi Chenar, F., Manfield, I., Le Grice, S., Schneekloth, Jr., J. S., Twarock, R., Stockley, P. G. & Patel, N., 29 Apr 2022, (E-pub ahead of print)

    Article in Data in Brief

  42. Destruction of Staphylococcus aureus and the impact of chlortetracycline on biomethane production during anaerobic digestion of chicken manure

    Kirby, M. E., Mirza, M. W., Leigh, T., Oldershaw, L., Reilly, M. & Jeffery, S., 14 Nov 2019, (E-pub ahead of print)

    Article in Heliyon

  43. Detecting the impact of temperature on transmission of Zika, dengue, and chikungunya using mechanistic models

    Mordecai, E. A., Cohen, J. M., Evans, M. V., Gudapati, P., Johnson, L. R., Lippi, C. A., Miazgowicz, K., Murdock, C. C., Rohr, J. R., Ryan, S. J., Savage, V., Shocket, M. S., Stewart Ibarra, A., Thomas, M. B. & Weikel, D. P., 27 Apr 2017, (E-pub ahead of print)

    Article in PLOS NEGLECTED TROPICAL DISEASES

  44. Direct removal of RNA polymerase barriers to replication by accessory replicative helicases

    Hawkins, M. S., Dimude, J. U., Howard, J. A. L., Smith, A. J., Dillingham, M. S., Savery, N. J., Rudolph, C. J. & McGlynn, P., 4 Jun 3019

    Article in Nucleic Acids Research

  45. Dissecting pathways to thrombocytopenia in a mouse model of visceral leishmaniasis

    Rani, G. F., Preham, O., Ashwin, H., Brown, N., Hitchcock, I. S. & Kaye, P. M., 12 Mar 2021, (E-pub ahead of print)

    Article in Blood Advances

  46. Diversity of endogenous Avian Leukosis Virus subgroup E (ALVE) insertions in indigenous chickens

    Mason, A. S., Miedzinska, K., Kebede, A., Bamidele, O., Al-Jumaili, A. S., Dessie, T., Hanotte, O. & Smith, J., 1 Jun 2020, (E-pub ahead of print)

    Article in Genetics Selection Evolution

  47. Dogger Bank: Weighing the Fog of War

    MacKay, N. J., Price, C. & Wood, A. J., 9 Jun 2017, (E-pub ahead of print)

    Article in Significance

  48. Drug Discovery for Kinetoplastid Diseases: Future Directions

    Rao, S. P. S., Barrett, M., Dranoff, G., Faraday, C., Gimpelewicz, C. R., Hailu, A., Jones, C. L., Kelly, J. M., Lazdins-Helds, J. K., Maeser, P., Mengel, J., Mottram, J. C., Mowbray, C. E., Sacks, D. L., Scott, P., Spath, G. F., Tarleton, R. L., Spector, J. M. & Diagana, T. T., 13 Dec 2018, (E-pub ahead of print)

    Article in ACS Infectious Diseases

  49. Dysregulation of Hepatitis B Virus Nucleocapsid Assembly in vitro by RNA-binding Small Ligands

    Patel, N., Abulwerdi, F., Fatehi Chenar, F., Manfield, I., Le Grice, S., Schneekloth, Jr., J. S., Twarock, R. & Stockley, P. G., 24 Mar 2022, (E-pub ahead of print)

    Article in Journal of Molecular Biology

  50. Early reduction in PD-L1 expression predicts faster treatment response in human cutaneous leishmaniasis

    Dey, N. S., Senaratne, S., Somaratne, V., Madarasinghe, N. P., Seneviratne, B., Forrester, S., Montes de Oca, M., Reis, L. C., Moulik, S., Walrad, P. B., Chatterjee, M., Goto, H., Wickremasinghe, R., Lagos, D., Kaye, P. M. & Ranasinghe, S., 5 Oct 2021, (E-pub ahead of print)

    Article in Journal of Clinical Investigation

  51. Eave tubes for malaria control in Africa: Initial development and semi-field evaluations in Tanzania Lucy Tusting, Jo Lines

    Sternberg, E. D., Ng'Habi, K. R., Lyimo, I. N., Kessy, S. T., Farenhorst, M., Thomas, M. B., Knols, B. G. J. & Mnyone, L. L., 1 Sep 2016, (E-pub ahead of print)

    Article in MALARIA JOURNAL

  52. Eave tubes for malaria control in Africa: an introduction

    Knols, B. G. J., Farenhorst, M., Andriessen, R., Snetselaar, J., Suer, R. A., Osinga, A. J., Knols, J. M. H., Deschietere, J., Ng’habi, K. R., Lyimo, I. N., Kessy, S. T., Mayagaya, V. S., Sperling, S., Cordel, M., Sternberg, E. D., Hartmann, P., Mnyone, L. L., Rose, A. & Thomas, M. B., 11 Aug 2016, (E-pub ahead of print)

    Review article in MALARIA JOURNAL

  53. Electrocoagulation treatment of dairy processing and slaughterhouse wastewaters

    Reilly, M., Cooley, A. P., Tito, D., Tassou, S. A. & Theodorou, M. K., 18 Mar 2019, (E-pub ahead of print)

    Conference article in Energy Procedia

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