Search research publications and outputs

  1. 2022
  2. Surface Shave: Revealing the Apical-Restricted Uroglycome

    Wang, C-Y., Bergstrom, E. T., Southgate, J. & Thomas-Oates, J. E., 5 Jan 2022, (E-pub ahead of print)

    Article in Journal of Proteome Research

  3. 2021
  4. Transformations to Regenerative Food Systems- An outline of the FixOurFood project

    Doherty, B., Bryant, M., Denby, K., Fazey, I. R. A., Bridle, S., Hawkes, C., Cain, M., Banwart, S., Collins, L., Pickett, K., Allen, M., Ball, P. D., Gardner, G. E., Carmen, E., Sinclair, M., Kluczkovski, A., Ehgartner, U., Morris, B., James, A., Yap, C. & 2 others, Om, S. & Connolly, A., 12 Dec 2021, (E-pub ahead of print)

    Article in Nutrition Bulletin

  5. Anthropogenic pressures coincide with Neotropical biodiversity hotspots in a flagship butterfly group

    Doré, M., Willmott, K., Leroy, B., Chazot, N., Mallet, J., Freitas, A. V. L., Hall, J. P. W., Lamas, G., Dasmahapatra, K. K., Fontaine, C. & Elias, M., 9 Dec 2021, (E-pub ahead of print)

    Article in Diversity and Distributions

  6. The Rpd3-complex regulates expression of multiple cell surface recycling factors in yeast

    Amoiradaki, K., Bunting, K. R., Paine, K., Ayre, J., Hogg, K., Laidlaw, K. M. E. & MacDonald, C., 19 Nov 2021, (E-pub ahead of print)

    Article in International Journal of Molecular Sciences

  7. Glial Nrf2 signaling mediates the neuroprotection exerted by Gastrodia elata Blume in Lrrk2-G2019S Parkinson's disease

    Lin, Y-E., Lin, C-H., Ho, E-P., Ke, Y-C., Petridi, S., Elliott, C., Sheen, L-Y. & Chien, C-T., 15 Nov 2021, (E-pub ahead of print)

    Article in eLife

  8. Complex basis of hybrid female sterility and Haldane's rule in Heliconius butterflies: Z-linkage and epistasis

    Rosser, N. S., Edelman, N., Queste, L., Nelson, M., Seixas, F., Dasmahapatra, K. K. & Mallet, J., 14 Nov 2021, (E-pub ahead of print)

    Article in Molecular Ecology

  9. Accuracy and Power Analysis of Social Networks Built From Count Data

    Hart, J. D. A., Franks, D. W., Brent, L. J. N. & Weiss, M. N., 16 Oct 2021, (E-pub ahead of print)

    Article in Methods in ecology and evolution

  10. Early reduction in PD-L1 expression predicts faster treatment response in human cutaneous leishmaniasis

    Dey, N. S., Senaratne, S., Somaratne, V., Madarasinghe, N. P., Seneviratne, B., Forrester, S., Montes de Oca, M., Reis, L. C., Moulik, S., Walrad, P. B., Chatterjee, M., Goto, H., Wickremasinghe, R., Lagos, D., Kaye, P. M. & Ranasinghe, S., 5 Oct 2021, (E-pub ahead of print)

    Article in Journal of Clinical Investigation

  11. Bone Marrow Remodelling Supports Hematopoiesis in Response to Immune Thrombocytopenia Progression

    Herd, O., Rani, G. F., Hewitson, J. P., Hogg, K., Stone, A., Cooper, N., Kent, D. G., Genever, P. & Hitchcock, I. S., 24 Aug 2021, (E-pub ahead of print)

    Article in Blood Advances

  12. Secreted pectin monooxygenases drive plant infection by pathogenic oomycetes

    Sabbadin, F., Urresti, S., Henrissat, B., Avrova, A. O., Welsh, L. R. J., Lindley, P., Csukai, M., Squires, J. N., Walton, P. H., Davies, G. J., Bruce, N. C., Whisson, S. C. & McQueen Mason, S. J., 13 Aug 2021, (E-pub ahead of print)

    Article in Science

  13. Time series transcriptomics reveals a BBX32-directed control of acclimation to high light in mature Arabidopsis leaves

    Alvarez-Fernandez, R., Penfold, C. A., Galvez-Valdivieso, G., Exposito-Rodriguez, M., Stallard, E. J., Bowden, L., Moore, J. D., Mead, A., Davey, P. A., Matthews, J. S. A., Beynon, J., Buchanan-Wollaston, V., Wild, D. L., Lawson, T., Bechtold, U., Denby, K. & Mullineaux, P. M., 6 Aug 2021, (E-pub ahead of print)

    Article in The Plant journal

  14. Elucidating the Role of Topological Constraint on the Structure of Overstretched DNA using Fluorescence Polarization Microscopy

    Backer, A. S., King, G. A., Biebricher, A. S., Shepherd, J., Noy, A., Leake, M. C., Heller, I., Wuite, G. J. L. & Peterman, E. J. G., 26 Jul 2021, (E-pub ahead of print)

    Article in The Journal of Physical Chemistry

  15. Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids

    Bayer, P. E., Scheben, A., Golicz, A. A., Yuan, Y., Faure, S., Lee, H., Chawla, H. S., Anderson, R., Bancroft, I., Raman, H., Lim, Y. P., Robbens, S., Jiang, L., Liu, S., Barker, M. S., Schranz, M. E., Wang, X., King, G. J., Pires, J. C., Chalhoub, B. & 3 others, Snowdon, R. J., Batley, J. & Edwards, D., 26 Jul 2021, (E-pub ahead of print)

    Article in Plant biology

  16. Proximity to forest mediates trade-offs between yields and biodiversity of birds in oil palm smallholdings

    Hamer, K. C., Sasu, M. A., Ofosuhene, L., Asare, R., Ossom, B., Parr, C. L., Scriven, S. A-L., Asante, W., Addico, R. & Hill, J. K., 18 Jul 2021, (E-pub ahead of print)

    Article in Biotropica

  17. Airborne and indigenous microbiomes co-drive the rebound of antibiotic resistome during compost storage

    Liao, H., Bai, Y., Liu, C., Wen, C., Yang, Q., Chen, Z., Banerjee, S., Zhou, S. & Friman, V-P., 14 Jul 2021, (E-pub ahead of print)

    Article in Environmental Microbiology

  18. Rapid compensatory evolution can rescue low fitness symbioses following partner-switching

    Sørensen, M. E. S., Wood, A. J., Cameron, D. D. & Brockhurst, M., 12 Jul 2021, (E-pub ahead of print)

    Article in Current Biology

  19. An alkynylpyrimidine-based covalent inhibitor that targets a unique cysteine in NF-κB-inducing kinase (NIK)

    Al-Khawaldeh, I., Alyassiri, M., Aldred, G., Basmadjian, C., Bordoni, C., Harnor, S. J., Heptinstall, A. B., Hobson, S., Jennings, C., Khalifa, S., Lebraud, H., Martin, M. P., Miller, D. C., Shrives, H., De Souza, J., Stewart, H., Temple, M. J., Thomas, H., Totobenazara, J., Tucker, J. A. & 12 others, Tudhope, S., Wang, L-Z., Bronowska, A., Cano, C., Endicott, J. A., Golding, B., Hardcastle, I. R., Hickson, I., Wedge, S., Willmore, E., Noble, M. E. M. & Waring, M. J., 2 Jul 2021, (E-pub ahead of print)

    Article in JOURNAL OF MEDICINAL CHEMISTRY

  20. A long postreproductive life span is a shared trait among genetically distinct killer whale populations

    Nielsen, M., Ellis, S., Towers, J., Doniol-Valcroze, T., Franks, D. W., Cant, M., Weiss, M., Johnstone, R. A., Balcomb, K. C., Ellifrit, D. K. & Croft, D., 16 Jun 2021, (E-pub ahead of print)

    Article in Ecology and Evolution

  21. Validation of IMS-MS as a screening tool to identify type II kinase inhibitors of FGFR1 kinase

    Beeston, H., Klein, T., Norman, R., Tucker, J. A., Anderson, M., Ashcroft, A. E. & Holdgate, G., 26 May 2021, (E-pub ahead of print)

    Article in Rapid Communications in Mass Spectrometry

  22. 17-AAG-induced activation of the autophagic pathway in Leishmania is associated with parasite death

    Petersen, A. L. D. O. A., Cull, B., Simões Dias, B. R., Palma, L. C., da Silva Luz, Y., de Menezes, J. P. B., Mottram, J. C. & Veras, P. S. T., 19 May 2021, (E-pub ahead of print)

    Article in Microorganisms

  23. Protein acetylation in the critical biological processes in protozoan parasites

    Maran, S. R., Fleck, K., Monteiro-Teles, N. M., Isebe, T., Walrad, P., Jeffers, V., Cestari, I., Vasconcelos, E. J. R. & Moretti, N., 12 May 2021, (E-pub ahead of print)

    Review article in Trends in parasitology

  24. A chromosome-level Amaranthus cruentus genome assembly highlights gene family evolution and biosynthetic gene clusters that may underpin the nutritional value of this traditional crop

    Ma, X., Vaistij, F. E., Li, Y., Jansen van Rensburg, W. S., Harvey, S. E., Bairu, M. W., Venter, S. L., Mavengahama, S., Ning, Z., Graham, I. A., Van Deynze, A., Van de Peer, Y. & Denby, K., 7 May 2021, (E-pub ahead of print)

    Article in The Plant journal

  25. Field trial demonstrating phytoremediation of the military explosive RDX using XplAB-expressing switchgrass in-the-field

    Cary, T. J., Rylott, L., Zhang, L., Routsong, R., Palazzo, A. J., Strand, S. E. & Bruce, N. C., 3 May 2021, (E-pub ahead of print)

    Article in Nature Biotechnology

  26. Nest choice in arboreal ants is an emergent consequence of network creation under spatial constraints

    Chang, J., Powell, S., Robinson, E. J. H. & Donaldson-Matasci, M. C., 24 Apr 2021, (E-pub ahead of print)

    Article in Swarm Intelligence

  27. The relative importance of soil moisture in predicting bacterial wilt disease occurrence

    Jiang, G., Ningqi, W., Yaoyu, Z., Wang, Z., Zhang, Y., Yu, J., Zhang, Y., Wei, Z., Xu, Y-C., Geisen, S., Friman, V-P. & Shen, Q., 15 Apr 2021, (E-pub ahead of print)

    Article in Soil Ecology Letters

  28. Zinc-dependent multimerization of mutant calreticulin is required for MPL binding and MPN pathogenesis

    Rivera, J. F., Baral, A. J., Nadat, F., Boyd, G., Smyth, R., Patel, H., Burman, E. L., Alameer, G., Boxall, S. A., Jackson, B. R., Baxter, J., Laslo, P., Green, A. R., Kent, D. G., Mullally, A. & Chen, E., 5 Apr 2021, (E-pub ahead of print)

    Article in Blood Advances

  29. Presynaptic accumulation of α-synuclein causes synaptopathy and progressive neurodegeneration in Drosophila

    Bridi, J. C., Bereczki, E., Smith, S. K., Pocas, G. M., Kottler, B., Domingos, P. M., Elliott, C., Aarsland, D. & Hirth, F., 22 Mar 2021, (E-pub ahead of print)

    Article in Brain Communications

  30. Dissecting pathways to thrombocytopenia in a mouse model of visceral leishmaniasis

    Rani, G. F., Preham, O., Ashwin, H., Brown, N., Hitchcock, I. S. & Kaye, P. M., 12 Mar 2021, (E-pub ahead of print)

    Article in Blood Advances

  31. Substrate anchoring and flexibility reduction in CYP153AM.aq leads to highly improved activity towards octanoic acid

    Grogan, G. J., Rowlinson, B., Sharma, M., Zukic, E., Hauer, B., Rapp, L., Marques, S. & Damborsky, J., 24 Feb 2021, (E-pub ahead of print)

    Article in ACS Catalysis

  32. Herbicide selection promotes antibiotic resistance in soil microbiomes

    Liao, H., Li, X., Yang, Q., Bai, Y., Cui, P., Wen, C., Liu, C., Chen, Z., Tang, J., Che, J., Yu, Z., Geisen, S., Zhou, S., Friman, V-P. & Zhu, Y-G., 16 Feb 2021, (E-pub ahead of print)

    Article in Molecular Biology and Evolution

  33. Single-molecule FRET dynamics of molecular motors in an ABEL Trap

    Dienerowitz, M., Howard, J. A. L., Quinn, S., Dienerowitz, F. & Leake, M. C., 9 Feb 2021, (E-pub ahead of print)

    Article in Methods

  34. A recombineering pipeline to clone large and complex genes in Chlamydomonas

    Emrich-Mills, T. Z., Yates, G., Barrett, J., Girr, P., Grouneva, I., Lau, C. S., Walker, C. E., Kwok, T. K., Davey, J. W., Johnson, M. P. & Mackinder, L., 2 Feb 2021, (E-pub ahead of print)

    Article in The Plant Cell

  35. Autophagy inhibition rescues structural and functional defects caused by the loss of mitochondrial chaperone Hsc70-5 in Drosophila

    Zhu, J., Hannan, S. B., Dräger, N. M., Vereshchagina, N., Krahl, A-C., Fu, Y., Elliott, C., Han, Z., Jahn, T. R. & Rasse, T. M., 25 Jan 2021, (E-pub ahead of print)

    Article in Autophagy

  36. The preservation of ancient DNA in archaeological fish bone

    Ferrari, G., Cuevas, A., Gondek-Wyrozemska, A. T., Ballantyne, R., Kersten, O., Pálsdóttir, A. H., van der Jagt, I., Hufthammer, A. K., Ystgaard, I., Wickler, S., Bigelow, G. F., Harland, J., Nicholson, R., Orton, D., Clavel, B., Boessenkool, S., Barrett, J. H. & Star, B., 9 Jan 2021, (E-pub ahead of print)

    Article in Journal of archaeological science

  37. 2020
  38. Overcoming the trade-off between grain weight and number in wheat by the ectopic expression of expansin in developing seeds leads to increased yield potential

    Calderini, D. F., Castillo, F. M. C., Arenas-M, A., Molero, G., Reynolds, M. P., Craze, M., Bowden, S., Milner, M. J., Wallington, E. J., Dowle, A., Gomez, L. D. & McQueen Mason, S. J., 4 Dec 2020, (E-pub ahead of print)

    Article in The New phytologist

  39. Insect egg-induced physiological changes and transcriptional reprogramming leading to gall development

    Oates, C. N., Denby, K., Myburg, A. A., Slippers, B. & Naidoo, S., 18 Nov 2020, (E-pub ahead of print)

    Article in Plant, Cell and Environment

  40. Find and fuse: Unsolved mysteries in sperm– egg recognition

    Bianchi, E. & Wright, G. J., 13 Nov 2020, (E-pub ahead of print)

    Article in PLoS Biology

  41. Assembly of the algal CO2-fixing organelle, the pyrenoid, is guided by a Rubisco-binding motif

    Meyer, M. T., Itakura, A. K., Patena, W., Wang, L., He, S., Emrich-Mills, T., Lau, C. S., Yates, G., Mackinder, L. & Jonikas, M. C., 11 Nov 2020, (E-pub ahead of print)

    Article in Science Advances

  42. The Amazon river is a suture zone for a polyphyletic group of co-mimetic heliconiine butterflies

    Rosser, N., Shirai, L. T., Dasmahapatra, K. K., Mallet, J. & Freitas, A. V. L., 10 Nov 2020, (E-pub ahead of print)

    Article in Ecography

  43. Role for the flagellum attachment zone in Leishmania anterior cell tip morphogenesis

    Halliday, C., Yanase, R., Catta-Preta, C. M. C., Moreira-Leite, F., Myskova, J., Pruzinova, K., Volf, P., Mottram, J. C. & Sunter, J. D., 22 Oct 2020, (E-pub ahead of print)

    Article in PLOS PATHOGENS

  44. Cytotoxic (cis,cis-1,3,5-triaminocyclohexane)ruthenium(II)–diphosphine complexes; evidence for covalent binding and intercalation with DNA

    Wise, D. E., Gamble, A. J., Arkawazi, S., Walton, P. H., Galan, M. C., O’Hagan, M. P., Hogg, K., Marrison, J., O'Toole, P. J., Sparkes, H. A., Lynam, J. M. & Pringle, P. G., 30 Sep 2020, (E-pub ahead of print)

    Article in Dalton Transactions

  45. The Mechanism of Vesicle Solubilization by the Detergent Sodium Dodecyl Sulfate

    Juan-Colas, J., Dresser, L., Morris, K., Lagadou, H., Ward, R. H., Burns, A., Tear, S., Johnson, S. D., Leake, M. C. & Quinn, S., 21 Sep 2020, (E-pub ahead of print)

    Article in Langmuir

  46. Overexpression of Placental Growth Factor in Stromal Cells from Benign Prostatic Hyperplasia: Another Piece in the Puzzle?

    Devlin, C., Frame, F. M., Archer, L., Mann, V. M., Walker, H., Simms, M. S., Berney, D. M., Collins, A. & Maitland, N. J., 14 Sep 2020, (E-pub ahead of print)

    Article in European Urology Open Science

  47. Benign Prostatic Hyperplasia- what do we know?

    Devlin, C. M., Simms, M. S. & Maitland, N. J., 7 Sep 2020, (E-pub ahead of print)

    Article in BJU International

  48. The Salmonella enterica serovar Typhimurium virulence factor STM3169 is a hexuronic acid binding protein component of a TRAP transporter

    Herman, R., Bennett-Ness, C., Maqbool, A., Afzal, A., Leech, A. & Thomas, G. H., 7 Sep 2020, (E-pub ahead of print)

    Article in Microbiology

  49. Deep convergence, shared ancestry and evolutionary novelty in the genetic architecture of heliconius mimicry

    Morris, J., Hanly, J. J., Martin, S. H., Van Belleghem, S. M., Salazar, C., Jiggins, C. D. & Dasmahapatra, K. K., 3 Sep 2020, (E-pub ahead of print)

    Article in Genetics

  50. Biocatalytic Transfer of Pseudaminic Acid (Pse5Ac7Ac) Using Promiscuous Sialyltransferases in a Chemoenzymatic Approach to Pse5Ac7Ac Containing Glycosides

    Flack, E., Chidwick, H., Guchhait, G., Keenan, T., Budhadev, D., Huang, K., Both, P., Mas Pons, J., Ledru, H., Rui, S., Stafford, G., Shaw, J., Galan, M. C., Flitsch, S. L., Thomas, G. H. & Fascione, M. A., 21 Aug 2020, (E-pub ahead of print)

    Article in ACS Catalysis

  51. Cropland trees need to be included for accurate model simulations of land-atmosphere heat fluxes, temperature, boundary layer height, and ozone

    Mishra, A. K., Sinha, B., Kumar, R., Barth, M., Hakkim, H., Kumar, V., Kumar, A., Datta, S., Guenther, A. & Sinha, V., 19 Aug 2020, (E-pub ahead of print)

    Article in Science of the Total Environment

  52. STAT3 inhibition with Galiellalactone effectively targets the prostate cancer stem-like cell population."

    Canesin, G., Maggio, V., Palominos, M., Stiehm, A., Contreras, H. R., Castellón, E. A., Morote, J., Paciucci, R., Maitland, N. J., Bjartell, A. & Hellsten, R., 18 Aug 2020, (E-pub ahead of print)

    Article in Scientific Reports

  53. SerraNA: a program to determine nucleic acids elasticity from simulation data

    Velasco Berrelleza, V., Burman, M., Shepherd, J., Leake, M. C., Golestanian, R. & Noy, A., 17 Aug 2020, (E-pub ahead of print)

    Article in Physical Chemistry Chemical Physics

  54. A molecular signal integration network underpinning Arabidopsis thaliana seed germination

    Xu, H., Lantzouni, O., Bruggink, T., Benjamins, R., Lanfermeijer, F., Denby, K., Schwechheimer, C. & Bassel, G. W., 6 Aug 2020, (E-pub ahead of print)

    Article in Current Biology

  55. Chemical structure predicts the effect of plant-derived low molecular weight compounds on soil microbiome structure and pathogen suppression

    Gu, Y., Wang, X., Yang, T., Friman, V-P., Geisen, S., Wei, Z., Xu, Y., Jousset, A. & Shen, Q., 31 Jul 2020, (E-pub ahead of print)

    Article in Functional Ecology

  56. Wading through the swamp: what does tropical peatland restoration mean to national level stakeholders in Indonesia?

    Ward, C. F. M., Stringer, L. C., Warren-Thomas, E. M., Agus, F., Hamer, K. C., Pettorelli, N., Hariyadi, B., Hodgson, J., Kartika, W. D., Lucey, J. M., McClean, C. J., Hill, J. K., Nurida, N. L. & Saad, A., 30 Jul 2020, (E-pub ahead of print)

    Article in Restoration Ecology

  57. Land-use change and propagule pressure promote plant invasions in tropical rainforest remnants

    Waddell, E., Banin, L., Fleiss, S., Hill, J. K., Hughes, M., Jelling, A., Loong, Y. K., Ola, B. B., Sailim, A. B., Tangah, J. & Chapman, D. S., 28 Jul 2020, (E-pub ahead of print)

    Article in Landscape ecology

  58. Can microclimate offer refuge to an upland bird species under climate change?

    Massimino, D., Beale, C. M., Suggitt, A., Crick, H. Q. P., Macgregor, N., Carroll, M. J., Maclean, I. M. D. & Pearce-Higgins, J. W., 18 Jul 2020, (E-pub ahead of print)

    Article in Landscape ecology

  59. Changes in expression level of OsHKT1;5 alters activity of membrane transporters involved in K+ and Ca2+ acquisition and homeostasis in salinized rice roots

    Al Nayef, M., Solis, C., Shabala, L., Ogura, T., Chen, Z., Bose, J., Maathuis, F., Venkataraman, G., Tanoi, K., Yu, M., Zhou, M., Horie, T. & Shabala, S., 10 Jul 2020, (E-pub ahead of print)

    Article in International Journal of Molecular Sciences

  60. Thermal biology of mosquito-borne disease

    Mordecai, E. A., Caldwell, J. M., Grossman, M. K., Lippi, C. A., Johnson, L. R., Neira, M., Rohr, J. R., Ryan, S. J., Savage, V., Shocket, M. S., Sippy, R., Stewart Ibarra, A. M., Thomas, M. B. & Villena, O., 8 Jul 2020, (E-pub ahead of print)

    Review article in Ecology Letters

  61. Phylogenetic signals and predictability in plant-soil feedbacks

    Wandrag, E. M., Bates, S. E., Barrett, L. G., Catford, J. A., Thrall, P. H., van der Putten, W. H. & Duncan, R. P., 3 Jul 2020, (E-pub ahead of print)

    Article in The New phytologist

  62. Communal Innovations: Inspiring Neighborhoods of Hope and Advocacy

    Smith, R. A., Kim, Y., Matthews, S. A., Sternberg, E. D., Doudou, D. T. & Thomas, M. B., 2 Jul 2020, (E-pub ahead of print)

    Article in Journal of health communication

  63. Profiling substrate promiscuity of wild-type sugar kinases for multifluorinated monosaccharides

    Keenan, T., Parmeggiani, F., Malassis, J., Fontenelle, C., Vendeville, J-B., Offen, W. A., Both, P., Huang, K., Marchesi, A., Heyam, A. P., Young, C., Charnock, S. J., Davies, G. J., Linclau, B., Flitsch, S. L. & Fascione, M. A., 2 Jul 2020, (E-pub ahead of print)

    Article in Cell Chemical Biology

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