Search research publications and outputs

  1. 17-AAG-induced activation of the autophagic pathway in Leishmania is associated with parasite death

    Petersen, A. L. D. O. A., Cull, B., Simões Dias, B. R., Palma, L. C., da Silva Luz, Y., de Menezes, J. P. B., Mottram, J. C. & Veras, P. S. T., 19 May 2021, (E-pub ahead of print)

    Article in Microorganisms

  2. A chromosome-level Amaranthus cruentus genome assembly highlights gene family evolution and biosynthetic gene clusters that may underpin the nutritional value of this traditional crop

    Ma, X., Vaistij, F. E., Li, Y., Jansen van Rensburg, W. S., Harvey, S. E., Bairu, M. W., Venter, S. L., Mavengahama, S., Ning, Z., Graham, I. A., Van Deynze, A., Van de Peer, Y. & Denby, K., 7 May 2021, (E-pub ahead of print)

    Article in The Plant journal

  3. A comparison of satellite remote sensing data fusion methods to map peat swamp forest loss in Sumatra, Indonesia

    Crowson, M., Warren-Thomas, E. M., Hill, J. K., Hariyadi, B., Agus, F., Saad, A., Hamer, K. C., Hodgson, J. A., Kartika, W. D., Lucey, J. M., McClean, C. J., Nurida, N. L., Pratiwi, E., Stringer, L. C., Ward, C. F. M. & Pettorelli, N., 10 Dec 2018, (E-pub ahead of print)

    Article in Remote Sensing in Ecology and Conservation

  4. A cytosolic acyltransferase contributes to triacylglycerol synthesis in sucrose-rescued Arabidopsis seed oil catabolism mutants.

    Hernandez, M. L., Whitehead, L., He, Z., Gazda, V., Gilday, A., Kozhevnikova, E., Vaistij, F. E., Larson, T. R. & Graham, I. A., 3 Jul 2012, (E-pub ahead of print)

    Article in Plant Physiology

  5. A glycosyl transferase family 43 protein involved in xylan biosynthesis is associated with straw digestibility in Brachypodium distachyon

    Whitehead, C., Ostos Garrido, F. J., Reymond, M., Simister, R., Distelfeld, A., Atienza, S. G., Piston, F., Gomez, L. D. & Mcqueen-Mason, S. J., 25 Mar 2018, (E-pub ahead of print)

    Article in The New phytologist

  6. A long postreproductive life span is a shared trait among genetically distinct killer whale populations

    Nielsen, M., Ellis, S., Towers, J., Doniol-Valcroze, T., Franks, D. W., Cant, M., Weiss, M., Johnstone, R. A., Balcomb, K. C., Ellifrit, D. K. & Croft, D., 16 Jun 2021, (E-pub ahead of print)

    Article in Ecology and Evolution

  7. A molecular signal integration network underpinning Arabidopsis thaliana seed germination

    Xu, H., Lantzouni, O., Bruggink, T., Benjamins, R., Lanfermeijer, F., Denby, K., Schwechheimer, C. & Bassel, G. W., 6 Aug 2020, (E-pub ahead of print)

    Article in Current Biology

  8. A quantitative immunoassay for lung cancer biomarker CIZ1b in patient plasma

    Coverley, D. A., Higgins, G. S., West, D., Jackson, O. T., Dowle, A., Haslam, A., Ainscough, E., Chalkley, R. & White, J., 17 Nov 2016, (E-pub ahead of print)

    Article in Clinical Biochemistry

  9. A recombineering pipeline to clone large and complex genes in Chlamydomonas

    Emrich-Mills, T. Z., Yates, G., Barrett, J., Girr, P., Grouneva, I., Lau, C. S., Walker, C. E., Kwok, T. K., Davey, J. W., Johnson, M. P. & Mackinder, L., 2 Feb 2021, (E-pub ahead of print)

    Article in The Plant Cell

  10. A role for the OsHKT 2;1 sodium transporter in potassium use efficiency in rice.

    Hartley, T. N., Thomas, A. S. & Maathuis, F. J. M., 11 Mar 2019, (E-pub ahead of print)

    Article in Jexbot

  11. An Arduino based Automatic Pressure Evaluation System (A-APES) to quantify growth of non-model anaerobes in culture

    Wilken, S. E., Leggieri, P. A., Kerdman-Andrade, C., Reilly, M., Theodorou, M. K. & O'Malley, M. A., 24 Jun 2020, (E-pub ahead of print)

    Article in AIChE Journal

  12. An alkynylpyrimidine-based covalent inhibitor that targets a unique cysteine in NF-κB-inducing kinase (NIK)

    Al-Khawaldeh, I., Alyassiri, M., Aldred, G., Basmadjian, C., Bordoni, C., Harnor, S. J., Heptinstall, A. B., Hobson, S., Jennings, C., Khalifa, S., Lebraud, H., Martin, M. P., Miller, D. C., Shrives, H., De Souza, J., Stewart, H., Temple, M. J., Thomas, H., Totobenazara, J., Tucker, J. A. & 12 others, Tudhope, S., Wang, L-Z., Bronowska, A., Cano, C., Endicott, J. A., Golding, B., Hardcastle, I. R., Hickson, I., Wedge, S., Willmore, E., Noble, M. E. M. & Waring, M. J., 2 Jul 2021, (E-pub ahead of print)

    Article in JOURNAL OF MEDICINAL CHEMISTRY

  13. Anaerobic digestion of Crassulacean Acid Metabolism plants: Exploring alternative feedstocks for semi-arid lands

    Lueangwattanapong, K., Ammam, F., Mason, P. M., Whitehead, C., McQueen-Mason, S. J., Gomez, L. D., Smith, J. A. C. & Thompson, I. P., 14 Oct 2019, (E-pub ahead of print)

    Article in BIORESOURCE TECHNOLOGY

  14. Analyses of ovarian activity reveal repeated evolution of post-reproductive lifespans in toothed whales

    Ellis, S., Franks, D. W., Nattrass, S., Currie, T., Cant, M. A., Giles, D., Balcomb, K. C. & Croft, D. P., 27 Aug 2018, (E-pub ahead of print)

    Article in Scientific Reports

  15. Annual cycles are the most common reproductive strategy in African tropical tree communities

    Adamescu, G. S., Plumptre, A. J., Abernethy, K. A., Polansky, L., Bush, E. R., Chapman, C. A., Shoo, L. P., Fayolle, A., Janmaat, K. R. L., Robbins, M. M., Ndangalasi, H. J., Cordeiro, N. J., Gilby, I. C., Wittig, R. M., Breuer, T., Ndoundou-Hockemba, M., Sanz, C. M., Morgan, D. B., Pusey, A. E., Mugerwa, B. & 19 others, Gilagiza, B., Tutin, C., Ewango, C. E. N., Sheil, D., Dimoto, E., Baya, F., Bujo, F., Ssali, F., Dikangadissi, J. T., Jeffery, K. J., Valenta, K., White, L. J. T., Masozera, M., Wilson, M. L., Bitariho, R., Ndolo Ebika, S. T., Gourlet-Fleury, S., Mulindahabi, F. & Beale, C. M., 16 May 2018, (E-pub ahead of print)

    Article in Biotropica

  16. Application of biochar reduces Ralstonia solanacearum infection via effects on pathogen chemotaxis, swarming motility, and root exudate adsorption

    Gu, Y., Hou, Y., Huang, D., Hao, Z., Wang, X., Wei, Z., Jousset, A., Tan, S., Xu, D., Shen, Q., Xu, Y. & Friman, V. P., 29 Dec 2016, (E-pub ahead of print)

    Article in Plant and soil

  17. Arable fields as potential reservoirs of biodiversity: earthworm populations increase in new leys

    Prendergast-Miller, M., Jones, D., Berdeni, D., Bird, S., Chapman, P. J., Firbank, L., Grayson, R., Helgason, T., Holden, J., Lappage, M., Leake, J. & Hodson, M. E., 1 Oct 2021

    Article in Science of the Total Environment

  18. Assembly of the algal CO2-fixing organelle, the pyrenoid, is guided by a Rubisco-binding motif

    Meyer, M. T., Itakura, A. K., Patena, W., Wang, L., He, S., Emrich-Mills, T., Lau, C. S., Yates, G., Mackinder, L. & Jonikas, M. C., 11 Nov 2020, (E-pub ahead of print)

    Article in Science Advances

  19. Assessing the effectiveness of protected areas for conserving range-restricted rainforest butterflies in Sabah, Borneo

    Scriven, S. A-L., Williams, S. H., Ghani, M. A., Agama, A. L., Benedick, S., Brodie, J. F., Hamer, K. C., McClean, C. J., Reynolds, G. & Hill, J. K., 18 Oct 2019, (E-pub ahead of print)

    Article in Biotropica

  20. Autophagy inhibition rescues structural and functional defects caused by the loss of mitochondrial chaperone Hsc70-5 in Drosophila

    Zhu, J., Hannan, S. B., Dräger, N. M., Vereshchagina, N., Krahl, A-C., Fu, Y., Elliott, C., Han, Z., Jahn, T. R. & Rasse, T. M., 25 Jan 2021, (E-pub ahead of print)

    Article in Autophagy

  21. Bacteriophage MS2 Genomic RNA Encodes an Assembly Instruction Manual for Its Capsid

    Stockley, P. G., White, S. J., Dykeman, E. C., Rolfsson, Ó., Patel, N., Bingham, R. J., Iain, M., Amy, B., Emma, W., Rebecca, C-B., Weiss, E. U., Ranson, N. A., Tuma, R. & Twarock, R., 2 Mar 2016, (E-pub ahead of print)

    Article in Bacteriophage

  22. Biocatalytic Transfer of Pseudaminic Acid (Pse5Ac7Ac) Using Promiscuous Sialyltransferases in a Chemoenzymatic Approach to Pse5Ac7Ac Containing Glycosides

    Flack, E., Chidwick, H., Guchhait, G., Keenan, T., Budhadev, D., Huang, K., Both, P., Mas Pons, J., Ledru, H., Rui, S., Stafford, G., Shaw, J., Galan, M. C., Flitsch, S. L., Thomas, G. H. & Fascione, M. A., 21 Aug 2020, (E-pub ahead of print)

    Article in ACS Catalysis

  23. Caenorhabditis elegans star formation and negative chemotaxis induced by infection with corynebacteria

    Antunes, C. A., Clark, L., Wanuske, M. T., Hacker, E., Ott, L., Simpson-Louredo, L., de Luna, M. D. G., Hirata, R., Mattos-Guaraldi, A. L., Hodgkin, J. & Burkovski, A., 1 Jan 2016, (E-pub ahead of print)

    Article in Microbiology (United Kingdom)

  24. Calculating effect sizes in animal social network analysis

    Franks, D. W., Weiss, M. N., Silk, M. J., Perryman, R. J. Y. & Croft, D. P., 21 Jun 2020, (E-pub ahead of print)

    Article in Methods in ecology and evolution

  25. Can microclimate offer refuge to an upland bird species under climate change?

    Massimino, D., Beale, C. M., Suggitt, A., Crick, H. Q. P., Macgregor, N., Carroll, M. J., Maclean, I. M. D. & Pearce-Higgins, J. W., 18 Jul 2020, (E-pub ahead of print)

    Article in Landscape ecology

  26. Catastrophic Decline of World's Largest Primate: 80% Loss of Grauer's Gorilla (Gorilla beringei graueri) Population Justifies Critically Endangered Status

    Plumptre, A. J., Nixon, S., Kujirakwinja, D. K., Vieilledent, G., Critchlow, R., Williamson, E. A., Nishuli, R., Kirkby, A. E. & Hall, J. S., 19 Oct 2016, (E-pub ahead of print)

    Article in PLoS ONE

  27. Cell wall hydrolases act in concert during aerenchyma development in sugarcane roots

    Grandis, A., Leite, D. C. C., Tavares, E. Q. P., Arenque-Musa, B. C., Gaiarsa, J. W., Martins, M. C. M., De Souza, A. P., Gomez, L. D., Fabbri, C., Mattei, B. & Buckeridge, M. S., 13 Jun 2019, (E-pub ahead of print)

    Article in Annals of Botany

  28. Changes in expression level of OsHKT1;5 alters activity of membrane transporters involved in K+ and Ca2+ acquisition and homeostasis in salinized rice roots

    Al Nayef, M., Solis, C., Shabala, L., Ogura, T., Chen, Z., Bose, J., Maathuis, F., Venkataraman, G., Tanoi, K., Yu, M., Zhou, M., Horie, T. & Shabala, S., 10 Jul 2020, (E-pub ahead of print)

    Article in International Journal of Molecular Sciences

  29. Characterization of flowing liquid films as a regenerating plasma mirror for high repetition-rate laser contrast enhancement

    Underwood, C. I. D., Gan, G., He, Z. H., Murphy, C. D., Thomas, A. G. R., Krushelnick, K. & Nees, J., 18 May 2020, (E-pub ahead of print)

    Article in Laser and Particle Beams

  30. Chemical structure predicts the effect of plant-derived low molecular weight compounds on soil microbiome structure and pathogen suppression

    Gu, Y., Wang, X., Yang, T., Friman, V-P., Geisen, S., Wei, Z., Xu, Y., Jousset, A. & Shen, Q., 31 Jul 2020, (E-pub ahead of print)

    Article in Functional Ecology

  31. Chronic Gastrointestinal Nematode Infection Mutes Immune Responses to Mycobacterial Infection Distal to the Gut

    Obieglo, K., Feng, X., Bollampalli, V. P., Dellacasa-Lindberg, I., Classon, C., Österblad, M., Helmby, H., Hewitson, J. P., Maizels, R. M., Gigliotti Rothfuchs, A. & Nylén, S., 27 Jan 2016, (E-pub ahead of print)

    Article in Journal of Immunology

  32. Communal Innovations: Inspiring Neighborhoods of Hope and Advocacy

    Smith, R. A., Kim, Y., Matthews, S. A., Sternberg, E. D., Doudou, D. T. & Thomas, M. B., 2 Jul 2020, (E-pub ahead of print)

    Article in Journal of health communication

  33. Comparative effects of temperature and thermoregulation on candidate strains of entomopathogenic fungi for Moroccan locust Dociostaurus maroccanus control

    Valverde-Garcia, P., Santiago-Alvarez, C., Thomas, M. B., Garrido-Jurado, I. & Quesada-Moraga, E., 30 Aug 2018, (E-pub ahead of print)

    Article in Biocontrol

  34. Continent-level drivers of African pyrodiversity

    Hempson, G. J., Parr, C. L., Archibald, S., Anderson, T. M., Courtney-Mustaphi, C. J., Dobson, A. P., Donaldson, J. E., Morrison, T. A., Probert, J., Beale, C. M. & Anderson, T. M., 11 Jul 2017, (E-pub ahead of print)

    Article in Ecography

  35. Coordinated regulation of core and accessory genes in the multipartite genome of Sinorhizobium fredii

    Jiao, J., Ni, M., Zhang, B., Zhang, Z., Young, J. P. W., Chan, T-F., Chen, W. X., Lam, H-M. & Tian, C. F., 24 May 2018, (E-pub ahead of print)

    Article in PLoS Genetics

  36. Crystal Structure and Activity Studies of the C11 Cysteine Peptidase from Parabacteroides merdae in the Human Gut Microbiome.

    McLuskey, K., Grewal, J., Das, D., Godzik, A., Lesley, S. A., Deacon, A. M., Coombs, G. H., Elslinger, M-A., Wilson, I. A. & Mottram, J. C., 3 Mar 2016, (E-pub ahead of print)

    Article in Journal of Biological Chemistry

  37. Cytotoxic (cis,cis-1,3,5-triaminocyclohexane)ruthenium(II)–diphosphine complexes; evidence for covalent binding and intercalation with DNA

    Wise, D. E., Gamble, A. J., Arkawazi, S., Walton, P. H., Galan, M. C., O’Hagan, M. P., Hogg, K., Marrison, J., O'Toole, P. J., Sparkes, H. A., Lynam, J. M. & Pringle, P. G., 30 Sep 2020, (E-pub ahead of print)

    Article in Dalton Transactions

  38. Deep convergence, shared ancestry and evolutionary novelty in the genetic architecture of heliconius mimicry

    Morris, J., Hanly, J. J., Martin, S. H., Van Belleghem, S. M., Salazar, C., Jiggins, C. D. & Dasmahapatra, K. K., 3 Sep 2020, (E-pub ahead of print)

    Article in Genetics

  39. Destruction of Staphylococcus aureus and the impact of chlortetracycline on biomethane production during anaerobic digestion of chicken manure

    Kirby, M. E., Mirza, M. W., Leigh, T., Oldershaw, L., Reilly, M. & Jeffery, S., 14 Nov 2019, (E-pub ahead of print)

    Article in Heliyon

  40. Detecting the impact of temperature on transmission of Zika, dengue, and chikungunya using mechanistic models

    Mordecai, E. A., Cohen, J. M., Evans, M. V., Gudapati, P., Johnson, L. R., Lippi, C. A., Miazgowicz, K., Murdock, C. C., Rohr, J. R., Ryan, S. J., Savage, V., Shocket, M. S., Stewart Ibarra, A., Thomas, M. B. & Weikel, D. P., 27 Apr 2017, (E-pub ahead of print)

    Article in PLOS NEGLECTED TROPICAL DISEASES

  41. Development of a sample preparation approach to measure the size of nanoparticle aggregates by electron microscopy

    Dudkiewicz, A., Lehner, A., Chaudhry, Q., Molhave, K., Allmaier, G., Tiede, K., Boxall, A. B. A., Hofmann, P. & Lewis, J., 29 Nov 2018, (E-pub ahead of print)

    Article in Particuology

  42. Direct removal of RNA polymerase barriers to replication by accessory replicative helicases

    Hawkins, M. S., Dimude, J. U., Howard, J. A. L., Smith, A. J., Dillingham, M. S., Savery, N. J., Rudolph, C. J. & McGlynn, P., 4 Jun 3019

    Article in Nucleic Acids Research

  43. Diversity of endogenous Avian Leukosis Virus subgroup E (ALVE) insertions in indigenous chickens

    Mason, A. S., Miedzinska, K., Kebede, A., Bamidele, O., Al-Jumaili, A. S., Dessie, T., Hanotte, O. & Smith, J., 1 Jun 2020, (E-pub ahead of print)

    Article in Genetics Selection Evolution

  44. Dogger Bank: Weighing the Fog of War

    MacKay, N. J., Price, C. & Wood, A. J., 9 Jun 2017, (E-pub ahead of print)

    Article in Significance

  45. Drug Discovery for Kinetoplastid Diseases: Future Directions

    Rao, S. P. S., Barrett, M., Dranoff, G., Faraday, C., Gimpelewicz, C. R., Hailu, A., Jones, C. L., Kelly, J. M., Lazdins-Helds, J. K., Maeser, P., Mengel, J., Mottram, J. C., Mowbray, C. E., Sacks, D. L., Scott, P., Spath, G. F., Tarleton, R. L., Spector, J. M. & Diagana, T. T., 13 Dec 2018, (E-pub ahead of print)

    Article in ACS Infectious Diseases

  46. Eave tubes for malaria control in Africa: Initial development and semi-field evaluations in Tanzania Lucy Tusting, Jo Lines

    Sternberg, E. D., Ng'Habi, K. R., Lyimo, I. N., Kessy, S. T., Farenhorst, M., Thomas, M. B., Knols, B. G. J. & Mnyone, L. L., 1 Sep 2016, (E-pub ahead of print)

    Article in MALARIA JOURNAL

  47. Eave tubes for malaria control in Africa: an introduction

    Knols, B. G. J., Farenhorst, M., Andriessen, R., Snetselaar, J., Suer, R. A., Osinga, A. J., Knols, J. M. H., Deschietere, J., Ng’habi, K. R., Lyimo, I. N., Kessy, S. T., Mayagaya, V. S., Sperling, S., Cordel, M., Sternberg, E. D., Hartmann, P., Mnyone, L. L., Rose, A. & Thomas, M. B., 11 Aug 2016, (E-pub ahead of print)

    Review article in MALARIA JOURNAL

  48. Effect of detection heterogeneity in occupancy-detection models: an experimental test of time-to-first-detection methods

    Medina-Romero, M., O'Reilly-Nugent, A., Davidson, A., Bray, J., Wandrag, E., Gruber, B., Lopez-Aldana, A., Palit, R., Reid, T., Adamack, A., Pietsch, R., Allen, C., Mac Nally, R. & Duncan, R. P., 20 May 2019, (E-pub ahead of print)

    Article in Ecography

  49. Electrocoagulation treatment of dairy processing and slaughterhouse wastewaters

    Reilly, M., Cooley, A. P., Tito, D., Tassou, S. A. & Theodorou, M. K., 18 Mar 2019, (E-pub ahead of print)

    Conference article in Energy Procedia

  50. Field trial demonstrating phytoremediation of the military explosive RDX using XplAB-expressing switchgrass in-the-field

    Cary, T. J., Rylott, L., Zhang, L., Routsong, R., Palazzo, A. J., Strand, S. E. & Bruce, N. C., 3 May 2021, (E-pub ahead of print)

    Article in Nature Biotechnology

  51. Find and fuse: Unsolved mysteries in sperm– egg recognition

    Bianchi, E. & Wright, G. J., 13 Nov 2020, (E-pub ahead of print)

    Article in PLoS Biology

  52. Fitness consequences of altered feeding behavior in immune-challenged mosquitoes

    Ohm, J. R., Teeple, J., Nelson, W. A., Thomas, M. B., Read, A. F. & Cator, L. J., 29 Feb 2016, (E-pub ahead of print)

    Article in Parasites and Vectors

  53. Functional and informatics analysis enables glycosyltransferase activity prediction

    Yang, M., Fehl, C., Lees, K. V., Lim, E-K., Offen, W. A., Davies, G. J., Bowles, D. J., Davidson, M. G., Roberts, S. J. & Davis, B. G., 12 Nov 2018, (E-pub ahead of print)

    Article in NATURE CHEMICAL BIOLOGY

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