Search research publications and outputs

  1. miR-25 modulates invasiveness and dissemination of human prostate cancer cells via regulation of αv- and α6 integrin expression

    Zoni, E., van der Horst, G., van de Merbel, A. F., Chen, L., Rane, J. K., Pelger, R. C. M., Collins, A. T., Visakorpi, T., Snaar-Jagalska, B. E., Maitland, N. J. & van der Pluijm, G., 9 Apr 2015, (E-pub ahead of print)

    Article in Cancer research

  2. cis-12-oxo-phytodienoic acid represses Arabidopsis thaliana seed germination in shade light conditions

    Barros Galvão, T., Dave, A., Cole, A. F., Harvey, D., Langer, S., Larson, TR., Vaistij, F. E. & Graham, I. A., 20 Jul 2019, (E-pub ahead of print)

    Article in Journal of Experimental Botany

  3. Zinc-dependent multimerization of mutant calreticulin is required for MPL binding and MPN pathogenesis

    Rivera, J. F., Baral, A. J., Nadat, F., Boyd, G., Smyth, R., Patel, H., Burman, E. L., Alameer, G., Boxall, S. A., Jackson, B. R., Baxter, J., Laslo, P., Green, A. R., Kent, D. G., Mullally, A. & Chen, E., 5 Apr 2021, (E-pub ahead of print)

    Article in Blood Advances

  4. Wading through the swamp: what does tropical peatland restoration mean to national level stakeholders in Indonesia?

    Ward, C. F. M., Stringer, L. C., Warren-Thomas, E. M., Agus, F., Hamer, K. C., Pettorelli, N., Hariyadi, B., Hodgson, J., Kartika, W. D., Lucey, J. M., McClean, C. J., Hill, J. K., Nurida, N. L. & Saad, A., 30 Jul 2020, (E-pub ahead of print)

    Article in Restoration Ecology

  5. Variation in hemolysin A expression between uropathogenic Escherichia coli isolates determines NLRP3-dependent vs. -independent macrophage cell death and host colonization

    Murthy, A. M. V., Sullivan, M. J., Nhu, N. T. K., Lo, A. W., Phan, M-D., Peters, K. M., Boucher, D., Schroder, K., Beatson, S. A., Ulett, G. C., Schembri, M. A. & Sweet, M. J., 14 Mar 2019, (E-pub ahead of print)

    Article in The FASEB Journal

  6. Validation of IMS-MS as a screening tool to identify type II kinase inhibitors of FGFR1 kinase

    Beeston, H., Klein, T., Norman, R., Tucker, J. A., Anderson, M., Ashcroft, A. E. & Holdgate, G., 26 May 2021, (E-pub ahead of print)

    Article in Rapid Communications in Mass Spectrometry

  7. Validating layer-specific VASO across species

    Huber, L. R., Poser, B. A., Kaas, A. L., Fear, E. J., Dresbach, S., Berwick, J., Goebel, R., Turner, R. & Kennerley, A. J., 15 Aug 2021

    Article in Neuroimage

  8. Transmission traits of malaria parasites within the mosquito: Genetic variation, phenotypic plasticity, and consequences for control

    Lefevre, T., Ohm, J., Dabiré, K. R., Cohuet, A., Choisy, M., Thomas, M. B. & Cator, L., 16 Dec 2017, (E-pub ahead of print)

    Article in Evolutionary applications

  9. Thinking (in) complexity: (In) definitions and (mis)conceptions

    Teixeira de Melo, A., Caves, L. S. D., Dewitt, A., Clutton, E., Macpherson, R. & Garnett, P., 22 Jul 2019, (E-pub ahead of print)

    Article in Systems Research and Behavioral Science

  10. Thermal biology of mosquito-borne disease

    Mordecai, E. A., Caldwell, J. M., Grossman, M. K., Lippi, C. A., Johnson, L. R., Neira, M., Rohr, J. R., Ryan, S. J., Savage, V., Shocket, M. S., Sippy, R., Stewart Ibarra, A. M., Thomas, M. B. & Villena, O., 8 Jul 2020, (E-pub ahead of print)

    Review article in Ecology Letters

  11. The role of acroblast formation during Drosophila spermatogenesis

    Fari, K., Takacs, S., Ungar, D. & Sinka, R., 1 Aug 2016, (E-pub ahead of print)

    Article in Open Biology

  12. The relative importance of soil moisture in predicting bacterial wilt disease occurrence

    Jiang, G., Ningqi, W., Yaoyu, Z., Wang, Z., Zhang, Y., Yu, J., Zhang, Y., Wei, Z., Xu, Y-C., Geisen, S., Friman, V-P. & Shen, Q., 15 Apr 2021, (E-pub ahead of print)

    Article in Soil Ecology Letters

  13. The preservation of ancient DNA in archaeological fish bone

    Ferrari, G., Cuevas, A., Gondek-Wyrozemska, A. T., Ballantyne, R., Kersten, O., Pálsdóttir, A. H., van der Jagt, I., Hufthammer, A. K., Ystgaard, I., Wickler, S., Bigelow, G. F., Harland, J., Nicholson, R., Orton, D., Clavel, B., Boessenkool, S., Barrett, J. H. & Star, B., 9 Jan 2021, (E-pub ahead of print)

    Article in Journal of archaeological science

  14. The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea

    Olsen, J. L., Rouzé, P., Verhelst, B., Lin, Y-C., Bayer, T., Collen, J., Dattolo, E., De Paoli, E., Dittami, S., Maumus, F., Michel, G., Kersting, A., Lauritano, C., Lohaus, R., Töpel, M., Tonon, T., Vanneste, K., Amirebrahimi, M., Brakel, J., Boström, C. & 15 others, Chovatia, M., Grimwood, J., Jenkins, J. W., Jueterbock, A., Mraz, A., Stam, W. T., Tice, H., Bornberg-Bauer, E., Green, P. J., Pearson, G. A., Procaccini, G., Duarte, C. M., Schmutz, J., Reusch, T. B. H. & Van de Peer, Y., 27 Jan 2016, (E-pub ahead of print)

    Article in Nature

  15. The genome of Ectocarpus subulatus – a highly stress-tolerant brown alga

    Dittami, S. M., Corre, E., Brillet-Guéguen, L., Lipinska, A. P., Pontoizeau, N., Aite, M., Avia, K., Caron, C., Cho, C. H., Collén, J., Cormier, A., Delage, L., Doubleau, S., Frioux, C., Gobet, A., González-Navarrete, I., Groisillier, A., Hervé, C., Jollivet, D., KleinJan, H. & 16 others, Leblanc, C., Liu, X., Marie, D., Markov, G. V., Minoche, A. E., Monsoor, M., Pericard, P., Perrineau, M-M., Peters, A. F., Siegel, A., Siméon, A., Trottier, C., Yoon, H. S., Himmelbauer, H., Boyen, C. & Tonon, T., 11 Jan 2020, (E-pub ahead of print)

    Article in Marine Genomics

  16. The effect of microbial inoculant origin on the rhizosphere bacterial community composition and plant growth-promotion

    Gu, Y., Dong, K., Geisen, S., Yang, W., Yan, Y., Gu, D., Liu, N., Borisjuk, N., Luo, Y. & Friman, V-P., 21 May 2020, (E-pub ahead of print)

    Article in Plant and soil

  17. The ecology of tree reproduction in an African medium altitude rainforest

    Babweteera, F., Plumptre, A. J., Adamescu, G. S., Shoo, L. P., Beale, C. M., Reynolds, V., Nyeko, P. & Muhanguzi, G., 16 May 2018, (E-pub ahead of print)

    Article in Biotropica

  18. The WRKY6 transcription factor affects seed oil accumulation and alters fatty acid compositions in Arabidopsis thaliana

    Song, G., Li, X., Munir, R., Khan, A. R., Azhar, W., Yasin, M. U., Jiang, Q., Bancroft, I. & Gan, Y., 14 Mar 2020, (E-pub ahead of print)

    Article in Physiologia plantarum

  19. The Salmonella pathogenicity island-2 subverts human NLRP3 and NLRC4 inflammasome responses

    Bierschenk, D., Monteleone, M., Moghaddas, F., Baker, P. J., Masters, S. L., Boucher, D. & Schroder, K., 4 Oct 2018, (E-pub ahead of print)

    Article in Journal of leukocyte biology

  20. The Salmonella enterica serovar Typhimurium virulence factor STM3169 is a hexuronic acid binding protein component of a TRAP transporter

    Herman, R., Bennett-Ness, C., Maqbool, A., Afzal, A., Leech, A. & Thomas, G. H., 7 Sep 2020, (E-pub ahead of print)

    Article in Microbiology

  21. The Rib domain: Defining the remarkable structural malleability of a bacterial surface protein domain implicated in infection

    Whelan, F., Lafita, A., Griffiths, S. C., Cooper, R., Whittingham, J. L., Turkenburg, J. P., Manfield, I. W., St John, A. N., Paci, E., Bateman, A. & Potts, J. R., 9 Dec 2019, (E-pub ahead of print)

    Article in Proceedings of the National Academy of Sciences of the United States of America

  22. The Mechanism of Vesicle Solubilization by the Detergent Sodium Dodecyl Sulfate

    Juan-Colas, J., Dresser, L., Morris, K., Lagadou, H., Ward, R. H., Burns, A., Tear, S., Johnson, S. D., Leake, M. C. & Quinn, S., 21 Sep 2020, (E-pub ahead of print)

    Article in Langmuir

  23. The Amazon river is a suture zone for a polyphyletic group of co-mimetic heliconiine butterflies

    Rosser, N., Shirai, L. T., Dasmahapatra, K. K., Mallet, J. & Freitas, A. V. L., 10 Nov 2020, (E-pub ahead of print)

    Article in Ecography

  24. Th17-cell plasticity in Helicobacter hepaticus-induced intestinal inflammation

    Morrison, P. J., Bending, D., Fouser, L. A., Wright, J. F., Stockinger, B., Cooke, A. & Kullberg, M. C., 6 Mar 2013, (E-pub ahead of print)

    Article in Mucosal Immunology

  25. Techno-economic analysis of bio-methane production from agriculture and food industry waste

    Oreggioni, G. D., Luberti, M., Reilly, M., Kirby, M. E., Toop, T., Theodorou, M. & Tassou, S. A., 19 Sep 2017, (E-pub ahead of print)

    Conference article in Energy Procedia

  26. Systems Analyses Reveal the Resilience of Escherichia coli Physiology during Accumulation and Export of the Nonnative Organic Acid Citramalate

    Webb, J., Springthorpe, V. J., Rossoni, L., Minde, D-P., Langer, S., Walker, H., Alstrom-Moore, A., Larson, T., Lilley, K. S., Eastham, G., Stephens, G., Thomas, G. H., Kelly, D. J. & Green, J., 11 Jun 2019, (E-pub ahead of print)

    Article in mSphere

  27. Supramolecular assemblies underpin turnover of outer membrane proteins in bacteria

    Rassam, P., Copeland, N. A., Birkholz, O., Tóth, C., Chavent, M., Duncan, A. L., Cross, S. J., Housden, N. G., Kaminska, R., Seger, U., Quinn, D. M., Garrod, T. J., Sansom, M. S. P., Piehler, J., Baumann, C. G. & Kleanthous, C., 10 Jun 2015, (E-pub ahead of print)

    Article in Nature

  28. Substrate anchoring and flexibility reduction in CYP153AM.aq leads to highly improved activity towards octanoic acid

    Grogan, G. J., Rowlinson, B., Sharma, M., Zukic, E., Hauer, B., Rapp, L., Marques, S. & Damborsky, J., 24 Feb 2021, (E-pub ahead of print)

    Article in ACS Catalysis

  29. Sublethal effects of mixed fungal infections on the Moroccan locust, Dociostaurus maroccanus

    Valverde-Garcia, P., Santiago-Álvarez, C., Thomas, M. B., Maranhao, E. A. A., Garrido-Jurado, I. & Quesada-Moraga, E., 28 Dec 2018, (E-pub ahead of print)

    Article in Journal of invertebrate pathology

  30. Study of backward terahertz radiation from intense picosecond laser-solid interactions using a multichannel calorimeter system

    Liu, H., Liao, G. Q., Zhang, Y. H., Zhu, B. J., Zhang, Z., Li, Y. T., Scott, G. G., Rusby, D., Armstrong, C., Zemaityte, E., Bradford, P., Woolsey, N., Huggard, P., McKenna, P. & Neely, D., 22 Jan 2019, (E-pub ahead of print)

    Article in High Power Laser Science and Engineering

  31. Soil quality regeneration by grass-clover leys in arable rotations compared to permanent grassland: effects on wheat yield and resilience to drought and flooding

    Berdeni, D., Turner, A., Grayson, R., Llanos, J., Holden, J., Firbank, L., Lappage, M., Hunt, SPF., Chapman, P. J., Hodson, M. E., Helgason, T., Watt, P. & Leake, J., 1 Aug 2021

    Article in Soil and Tillage Research

  32. Sodium homeostasis in the tumour microenvironment

    Leslie, T. K., James, A. D., Zaccagna, F., Grist, J. T., Deen, S., Kennerley, A. J., Riemer, F., Kaggie, J. D., Gallagher, F. A., Gilbert, F. J. & Brackenbury, W. J., 23 Jul 2019, (E-pub ahead of print)

    Article in BBA - Reviews on Cancer

  33. Siderophore-mediated interactions determine the disease suppressiveness of microbial consortia

    Gu, S., Yang, T., Shao, Z., Cao, K., Jousset, A., Friman, V-P., Mallon, C., Mei, X., Wei, Z., Xu, Y., Shen, Q. & Pommier, T., 30 Jun 2020, (E-pub ahead of print)

    Article in American Society for Microbiology

  34. Short and long term effects of UV-A on Arabidopsis are mediated by a novel cGMP phosphodiesterase

    Isner, J-C. E. F., Olteanu, V-A., Hetherington, A. J., Coupel-Ledru, A., Sun, P., Pridgeon, A. J., Jones, G. S., Oates, M., Williams, T. A., Maathuis, F. J. M., Kift, R., Webb, A. R., Gough, J., Franklin, K. A. & Hetherington, A., 25 Jul 2019, (E-pub ahead of print)

    Article in Current Biology

  35. SerraNA: a program to determine nucleic acids elasticity from simulation data

    Velasco Berrelleza, V., Burman, M., Shepherd, J., Leake, M. C., Golestanian, R. & Noy, A., 17 Aug 2020, (E-pub ahead of print)

    Article in Physical Chemistry Chemical Physics

  36. Salmonella-induced inflammasome activation in humans

    Bierschenk, D., Boucher, D. & Schroder, K., 11 Dec 2016, (E-pub ahead of print)

    Review article in Molecular immunology

  37. STAT3 inhibition with Galiellalactone effectively targets the prostate cancer stem-like cell population."

    Canesin, G., Maggio, V., Palominos, M., Stiehm, A., Contreras, H. R., Castellón, E. A., Morote, J., Paciucci, R., Maitland, N. J., Bjartell, A. & Hellsten, R., 18 Aug 2020, (E-pub ahead of print)

    Article in Scientific Reports

  38. Role for the flagellum attachment zone in Leishmania anterior cell tip morphogenesis

    Halliday, C., Yanase, R., Catta-Preta, C. M. C., Moreira-Leite, F., Myskova, J., Pruzinova, K., Volf, P., Mottram, J. C. & Sunter, J. D., 22 Oct 2020, (E-pub ahead of print)

    Article in PLOS PATHOGENS

  39. Rhizosphere immunity: targeting the underground for sustainable plant health management

    Wei, Z., Friman, V-P., Pommier, T., Geisen, S., Jousset, A. & Shen, Q., 11 Jun 2020, (E-pub ahead of print)

    Article in Frontiers of Agricultural Science and Engineering

  40. Rethinking the extrinsic incubation period of malaria parasites

    Ohm, J. R., Baldini, F., Barreaux, P., Lefevre, T., Lynch, P. A., Suh, E., Whitehead, S. A. & Thomas, M. B., 12 Mar 2018, (E-pub ahead of print)

    Review article in Parasites and Vectors

  41. Recent advances in ancient DNA research and their implications for archaeobotany

    Brown, T. A., Cappellini, E., Kistler, L., Lister, D. L., Oliveira, H. R., Wales, N. & Schlumbaum, A., 7 Oct 2014, (E-pub ahead of print)

    Review article in Vegetation History and Archaeobotany

  42. QTL-seq identifies BnaFT.A02 and BnaFLC.A02 candidates for variation in vernalisation requirement and response in winter oilseed rape (Brassica napus)

    Tudor, E. H., Jones, D. M., He, Z., Bancroft, I., Trick, M., Wells, R., Irwin, J. A. & Dean, C., 23 Jun 2020, (E-pub ahead of print)

    Article in Plant biotechnology journal

  43. Proximity to forest mediates trade-offs between yields and biodiversity of birds in oil palm smallholdings

    Hamer, K. C., Sasu, M. A., Ofosuhene, L., Asare, R., Ossom, B., Parr, C. L., Scriven, S. A-L., Asante, W., Addico, R. & Hill, J. K., 18 Jul 2021, (E-pub ahead of print)

    Article in Biotropica

  44. Protein acetylation in the critical biological processes in protozoan parasites

    Maran, S. R., Fleck, K., Monteiro-Teles, N. M., Isebe, T., Walrad, P., Jeffers, V., Cestari, I., Vasconcelos, E. J. R. & Moretti, N., 12 May 2021, (E-pub ahead of print)

    Review article in Trends in parasitology

  45. Profiling substrate promiscuity of wild-type sugar kinases for multifluorinated monosaccharides

    Keenan, T., Parmeggiani, F., Malassis, J., Fontenelle, C., Vendeville, J-B., Offen, W. A., Both, P., Huang, K., Marchesi, A., Heyam, A. P., Young, C., Charnock, S. J., Davies, G. J., Linclau, B., Flitsch, S. L. & Fascione, M. A., 2 Jul 2020, (E-pub ahead of print)

    Article in Cell Chemical Biology

  46. Priorities for Broadening the Malaria Vector Control Tool Kit

    Barreaux, P., Barreaux, A. M. G., Sternberg, E. D., Suh, E., Waite, J. L., Whitehead, S. A. & Thomas, M. B., 28 Jun 2017, (E-pub ahead of print)

    Review article in Trends in parasitology

  47. Presynaptic accumulation of α-synuclein causes synaptopathy and progressive neurodegeneration in Drosophila

    Bridi, J. C., Bereczki, E., Smith, S. K., Pocas, G. M., Kottler, B., Domingos, P. M., Elliott, C., Aarsland, D. & Hirth, F., 22 Mar 2021, (E-pub ahead of print)

    Article in Brain Communications

  48. Predicting educational achievement from DNA

    Selzam, S., Krapohl, E., Von Stumm, S., O'Reilly, P. F., Rimfeld, K., Kovas, Y., Dale, P. S., Lee, J. J. & Plomin, R., 19 Jul 2016, (E-pub ahead of print)

    Article in Molecular psychiatry

  49. Planting seeds for the future of food

    Green, H., Broun, P., Cakmak, I., Condon, L., Federoff, N., Gonzalez-Valero, J., Graham, I. A., Lewis, J., Maloney, M., Oniang'o, R. K., Sanginga, N., Shewry, P. & Roulin, A., 1 Dec 2015, (E-pub ahead of print)

    Article in Journal of the science of food and agriculture

  50. Phylogenetic signals and predictability in plant-soil feedbacks

    Wandrag, E. M., Bates, S. E., Barrett, L. G., Catford, J. A., Thrall, P. H., van der Putten, W. H. & Duncan, R. P., 3 Jul 2020, (E-pub ahead of print)

    Article in The New phytologist

  51. Photoperiod sensing of the circadian clock is controlled by EARLY FLOWERING 3 and GIGANTEA

    Anwer, M. U., Davis, A. M., Davis, S. J. & Quint, M., 6 Nov 2019, (E-pub ahead of print)

    Article in The Plant journal

  52. Phage combination therapies for bacterial wilt disease in tomato

    Wang, X., Wei, Z., Yang, K., Wang, J., Jousset, A., Xu, Y., Shen, Q. & Friman, V-P., 2 Dec 2019, (E-pub ahead of print)

    Article in Nature Biotechnology

  53. Pathogen invasion indirectly changes the composition of soil microbiome via shifts in root exudation profile

    Gu, Y., Wei, Z., Wang, X., Friman, V-P., Huang, J., Wang, X., Mei, X., Xu, Y., Shen, Q. & Jousset, A., 27 Jul 2016, (E-pub ahead of print)

    Article in Biology and fertility of soils

  54. Parasites and competitors suppress bacterial pathogen synergistically due to evolutionary trade-offs

    Wang, X., Wei, Z., Li, M., Wang, X., Shan, A., Mei, X., Jousset, A., Shen, Q., Xu, Y. & Friman, V-P., 27 Dec 2016, (E-pub ahead of print)

    Article in Evolution

  55. Overhead tank is the potential breeding habitat of Anopheles stephensi in an urban transmission setting of Chennai, India

    Thomas, S., Ravishankaran, S., Justin, J. A., Asokan, A., Mathai, M. T., Valecha, N., Thomas, M. B. & Eapen, A., 11 May 2016, (E-pub ahead of print)

    Article in MALARIA JOURNAL

  56. Overexpression of Placental Growth Factor in Stromal Cells from Benign Prostatic Hyperplasia: Another Piece in the Puzzle?

    Devlin, C., Frame, F. M., Archer, L., Mann, V. M., Walker, H., Simms, M. S., Berney, D. M., Collins, A. & Maitland, N. J., 14 Sep 2020, (E-pub ahead of print)

    Article in European Urology Open Science

  57. Overcoming the trade-off between grain weight and number in wheat by the ectopic expression of expansin in developing seeds leads to increased yield potential

    Calderini, D. F., Castillo, F. M. C., Arenas-M, A., Molero, G., Reynolds, M. P., Craze, M., Bowden, S., Milner, M. J., Wallington, E. J., Dowle, A., Gomez, L. D. & McQueen Mason, S. J., 4 Dec 2020, (E-pub ahead of print)

    Article in The New phytologist

  58. Outcome measures in a combined exercise rehabilitation programme for adults with COPD and chronic heart failure: A preliminary stakeholder consensus event

    Jones, A. V., Evans, R. A., Man, W. D-C., Bolton, C. E., Breen, S., Doherty, P. J., Gardiner, N., Houchen-Wolloff, L., Hurst, J. R., Jolly, K., Maddocks, M., Quint, J. K., Revitt, O., Sherar, L. B., Taylor, R. S., Watt, A., Wingham, J., Yorke, J. & Singh, S. J., 16 Sep 2019, (E-pub ahead of print)

    Article in Chronic respiratory disease

  59. Older LGBT+ health inequalities in the UK: setting a research agenda

    Westwood, S., Willis, P., Fish, J., Hafford-Letchfield, T., Semlyen, J., King, A., Beach, B., Almack, K., Kneale, D., Toze, M. & Becares, L., 21 Feb 2020, (E-pub ahead of print)

    Review article in Journal of Epidemiology & Community Health

  60. Nutrient and drought stress: implications for phenology and biomass quality in miscanthus

    da Costa, R. M. F., Simister, R., Roberts, L. A., Timms-Taravella, E., Cambler, A. B., Corke, F. M. K., Han, J., Ward, R. J., Buckeridge, M. S., Gomez, L. D. & Bosch, M., 21 Aug 2018, (E-pub ahead of print)

    Article in Annals of Botany

  61. Nest choice in arboreal ants is an emergent consequence of network creation under spatial constraints

    Chang, J., Powell, S., Robinson, E. J. H. & Donaldson-Matasci, M. C., 24 Apr 2021, (E-pub ahead of print)

    Article in Swarm Intelligence

  62. Mycorrhizas for a changing world: Sustainability, conservation, and society

    Helgason, T., Field, K., Johnson, D. & Daniell, T., 22 Jan 2020, (E-pub ahead of print)

    Editorial in New Phytologist

  63. Molecular mechanism of photoperiod sensing

    Anwer, M. U., Davis, S. J., Quint, M. & Davis, A. M., 14 May 2018, (E-pub ahead of print)

    Article in bioRxiv

  64. Misdiagnosis and uncritical use of plant mycorrhizal data are not the only elephants in the room

    Bueno, C. G., Aldrich-Wolfe, L., Chaudhary, V. B., Gerz, M., Helgason, T., Hoeksema, J. D., Kilronomos, J., Lekberg, Y., Leon, D., Maherali, H., Opik, M., Zobel, M. & Moora, M., 27 Jun 2019, (E-pub ahead of print)

    Letter in New Phytologist

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