Search research publications and outputs

  1. 2022
  2. Biochemical and Elemental Composition of Pelagic Sargassum Biomass Harvested across the Caribbean

    Tonon, T., Botelho MacHado, C., Webber, M., Webber, D., Smith, J., Pilsbury, A., Ciceron, F., Herrera-Rodriguez, L., Jimenez, E. M., Suarez, J. V., Ahearn, M., Gonzalez, F. & Allen, M., 11 Mar 2022

    Article in Phycology

  3. 2021
  4. Characterisation of the enzyme transport path between shipworms and their bacterial symbionts

    Pesante, G., Sabbadin, F., Elias, L., Steele-King, C., Shipway, J. R., Dowle, A., Li, Y., Busse-Wicher, M., Dupree, P., Besser, K., Cragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 1 Nov 2021

    Article in BMC Biology

  5. Use of Sargassum compost in soil amelioration for mangrove seedling production

    Webber, M., Trench, C., Maddix, G-M. & Tonon, T., 31 May 2021.

    Research output: Contribution to conferencePosterpeer-review

  6. Genome structural evolution in Brassica crops

    He, Z., Ji, R., Havlickova, L., Wang, L., Li, Y., Lee, H. T., Song, J., Koh, C., Yang, J., Zhang, M., Parkin, I. A. P., Wang, X., Edwards, D., King, G. J., Zou, J., Liu, K., Snowdon, R. J., Banga, S. S., Machackova, I. & Bancroft, I., 27 May 2021

    Article in Nature Plants

  7. Design of experiments driven optimization of alkaline pretreatment and saccharification for sugarcane bagasse

    Mota, T. R., Oliveira, D. M., Simister, R., Whitehead, C. B., Lanot, A., Dos Santos, W. D., Rezende, C. A., McQueen Mason, S. J. & Gomez, L. D., 1 Feb 2021

    Article in BIORESOURCE TECHNOLOGY

  8. Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp

    Farhat, S., Le, P., Kayal, E., Noel, B., Bigeard, E., Corre, E., Maumus, F., Florent, I., Alberti, A., Aury, J-M., Barbeyron, T., Cai, R., Da Silva, C., Istace, B., Labadie, K., Marie, D., Mercier, J., Rukwavu, T., Szymczak, J., Tonon, T. & 7 others, Alves-de-Souza, C., Rouzé, P., Van de Peer, Y., Wincker, P., Rombauts, S., Porcel, B. M. & Guillou, L., 6 Jan 2021

    Article in BMC Biology

  9. 2020
  10. Selection of a subspecies-specific diterpene gene cluster implicated in rice disease resistance

    Zhan, C., Lei, L., Liu, Z., Zhou, S., Yang, C., Zhu, X., Guo, H., Zhang, F., Peng, M., Zhang, M., Li, Y., Yang, Z., Sun, Y., Shi, Y., Li, K., Liu, L., Shen, S., Wang, X., Li, Y., Czechowski, T. & 9 others, Hasegawa, M., Graham, I. A., Tohge, T., Qu, L., Liu, X., Fernie, A. R., Chen, L-L., Yuan, M. & Luo, J., 7 Dec 2020

    Article in Nature Plants

  11. Low mannitol concentrations in Arabidopsis thaliana expressing Ectocarpus genes improve salt tolerance

    Rathor, P., Borza, T., Liu, Y., Qin, Y., Stone, S., Zhang, J., Hui, J. P. M., Berrue, F., Groisillier, A., Tonon, T., Yurgel, S., Potin, P. & Prithiviraj, B., 7 Nov 2020

    Article in Plants

  12. Association mapping identifies quantitative trait loci (QTL) for digestibility in rice straw

    Nguyen, D. T., Gomez, L. D., Harper, A. L., Halpin, C., Waugh, R., Simister, R., Whitehead, C., Oakley, H., Nguyen, H. T., Nguyen, T. V., Duong, T. X. & McQueen Mason, S. J., 8 Oct 2020

    Article in Biotechnology for biofuels

  13. PsAA9A, a C1-specific AA9 lytic polysaccharide monooxigenase from the white-rot basidiomycete Pycnoporus sanguineus

    Garrido, M. M., Landon, M., Sabbadin, F., Valacco, M. P., Couto, A., Bruce, N. C., Wirth, S. A. & Campos, E., 23 Sep 2020

    Article in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

  14. Cell wall remodeling under salt stress: Insights into changes in polysaccharides, feruloylation, lignification, and phenolic metabolism in maize

    Oliveira, D. M., Mota, T. R., Salatta, F. V., Sinzker, R. C., Končitíková, R., Kopečný, D., Simister, R., Silva, M., Goeminne, G., Morreel, K., Rencoret, J., Gutiérrez, A., Tryfona, T., Marchiosi, R., Dupree, P., Del Río, J. C., Boerjan, W., McQueen-Mason, S. J., Gomez, L. D., Ferrarese-Filho, O. & 1 others, Dos Santos, W. D., 20 Aug 2020

    Article in Plant, Cell and Environment

  15. Untapped resources for medical research

    Perez-Escobar, O. A., Richardson, J. E., Howes, M-J. R., Lucas, E., Alvarez de Roman, N., Collemare, J., Graham, I. A., Gratzfeld, J., Kersey, P. J., Leitch, I. J., Paton, A., Hollingsworth, P. J. & Antonelli, A., 14 Aug 2020

    Comment/debate in Science

  16. Isoprostanoid profiling of marine microalgae

    Vigor, C., Oger, C., Reversat, G., Rocher, A., Zhou, B., Linares-Maurizi, A., Guy, A., Bultel-Ponce, V., Galano, J-M., Vercauteren, J., Durand, T., Potin, P., Tonon, T. & Leblanc, C., 18 Jul 2020

    Article in Biomolecules

  17. Global Transcriptomic Responses of Roseithermus sacchariphilus Strain RA in Media Supplemented with Beechwood Xylan

    Liew, K. J., Bruce, N. C., Sani, R. K., Chong, C. S., Yaakop, A. S., Shamsir, M. S. & Goh, K. M., 29 Jun 2020

    Article in Microorganisms

  18. Arabidopsis XTH4 and XTH9 contribute to wood cell expansion and secondary wall formation

    Kushwah, S., Banasiak, A., Nishikubo, N., Derba-Maceluch, M., Majda, M., Endo, S., Kumar, V., Gomez, L. D., Gorzsas, A., McQueen Mason, S. J., Braam, J., Sundberg, B. & Mellerowicza, E. J., Apr 2020

    Article in Plant Physiology

  19. 2019
  20. Robertkochia solimangrovi sp. nov., isolated from mangrove soil, and emended description of the genus Robertkochia

    Quan Lam, M., Vodovnik, M., Zorec, M., Chen, S. J., Mau Goh, K., Yahya, A., Salleh, M. M., Ibrahim, Z., Tokiman, L., McQueen Mason, S. J., Bruce, N. C. & Chong, C. S., 17 Dec 2019

    Article in International journal of systematic and evolutionary microbiology

  21. Designing xylan for improved sustainable biofuel production

    Oliveira, D. M., Mota, T. R., Salatta, F. V., Marchiosi, R., Gomez, L. D., McQueen-Mason, S. J., Ferrarese-Filho, O. & Dos Santos, W. D., 6 Nov 2019

    Article in Plant biotechnology journal

  22. Industry-Informed Workshops to Develop Graduate Skill Sets in the Circular Economy Using Systems Thinking

    Summerton, L., Clark, J. H., Hurst, G. A., Ball, P. D., Rylott, E. L., Carslaw, N., Creasey, J., Murray, J., Whitford, J., Dobson, B., Sneddon, H. F., Ross, J., Metcalf, P. & McElroy, C. R., 1 Nov 2019

    Article in JOURNAL OF CHEMICAL EDUCATION

  23. The genome of Ectocarpus subulatus – a highly stress-tolerant brown alga

    Dittami et al. & Tonon, T., 24 Oct 2019, bioRxiv, at Cold Spring Harbor Laboratory.

    Research output: Working paper

  24. Microalgae Isoprostanoids Profiling: Species Choice and Growing Conditions Impact

    Vigor, C., Reversat, G., Rocher, A., Linares-Maurizi, A., Oger, C., Galano, J-M., Vercauteren, J., Durand, T., Leblanc, C., Potin, P. & Tonon, T., 20 Oct 2019.

    Research output: Contribution to conferencePosterpeer-review

  25. Insights into microbial community structure and diversity in oil palm waste compost

    Khalid, N. A., Rajandas, H., Parimannan, S., Croft, L. J., Loke, S., Chong, C. S., Bruce, N. C. & Yahya, A., 1 Oct 2019

    Article in 3 Biotech

  26. 2018
  27. Low-oxygen response is triggered by an ATP-dependent shift in oleoyl-CoA in Arabidopsis

    Schmidt, R., Fulda, M., Paul, M., Anders, M., Plum, F., Weits, D., Kosmacz, M., Larson, T., Graham, I. A., Beemster, G., Licausi, F., Gelgenberger, P., Schippers, J. & van Dongen, J. T., 18 Dec 2018

    Article in Proceedings of the National Academy of Sciences of the United States of America

  28. Hemocyanin facilitates lignocellulose digestion by wood-boring marine crustaceans

    Besser, K., Malyon, G. P., Eborall, W. S., Paro da Cunha, G., Goncalves Filgueiras, J., Dowle, A., Cruz Garcia, L., Page, S. J., Dupree, R., Kern, M. F., Gomez, L. D., Li, Y., Elias, L., Sabbadin, F., Mohamad, S. E., Pesante, G., Steele-King, C. G., Ribeiro de Azevedo, E., Polikarpov, I., Dupree, P. & 3 others, Cragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 3 Dec 2018

    Article in Nature Communications

  29. Isoprostanoids quantitative profiling of marine red and brown macroalgae

    Vigor, C., Reversat, G., Rocher, A., Oger, C., Galano, J-M., Vercauteren, J., Durand, T., Tonon, T., Leblanc, C. & Potin, P., 1 Dec 2018

    Article in Food Chemistry

  30. Plant–Rhizobium symbiosis, seed nutraceuticals, and waste quality for energy production of Vicia faba L. as affected by crop management

    Amalfitano, C., Gomez, L. D., Frendo, P., De Pascale, S., Pepe, O., Simister, R., Ventorino, V., Agrelli, D., Borrelli, C., McQueen-Mason, S. J. & Caruso, G., 1 Dec 2018

    Article in Chemical and Biological Technologies in Agriculture

  31. Valorisation strategies for cocoa pod husk and its fractions

    Lu, F., Rodriguez-Garcia, J., Van Damme, I., Westwood, N. J., Shaw, L., Robinson, J. S., Warren, G., Chatzifragkou, A., McQueen Mason, S., Gomez, L., Faas, L., Balcombe, K., Srinivasan, C., Picchioni, F., Hadley, P. & Charalampopoulos, D., 1 Dec 2018

    Review article in Current Opinion in Green and Sustainable Chemistry

  32. Response of cell wall composition and RNA-seq transcriptome to methyl-jasmonate in Brachypodium distachyon callus

    Hyde, L. S., Pellny, T. K., Freeman, J., Michaelson, L. V., Simister, R., McQueen Mason, S. J. & Mitchell, R. A. C., 1 Nov 2018

    Article in Planta

  33. The opium poppy genome and morphinan production.

    Guo, L., Winzer, T. H., Yang, X., Li, Y., Ning, Z., He, Z., Teodor, R. I., Lu, Y., Bowser, T., Graham, I. A. & Ye, K., 19 Oct 2018

    Article in Science

  34. Uncovering the molecular mechanisms of lignocellulose digestion in shipworms

    Sabbadin, F., Pesante, G., Elias, L., Besser, K., Li, Y., Steele-King, C. G., Stark, M., Rathbone, D. A., Dowle, A., Bates, R., Shipway, J. R., Cragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 7 Mar 2018

    Article in Biotechnology for biofuels

  35. Brown algal genes impart abiotic stress tolerance in Arabidopsis thaliania

    Rathor et al. , 2018.

    Research output: Contribution to conferencePosterpeer-review

  36. 2017
  37. Valorising faba bean residual biomass: Effect of farming system and planting time on the potential for biofuel production

    Gómez, L. D., Amalfitano, C., Andolfi, A., Simister, R., Somma, S., Ercolano, M. R., Borrelli, C., McQueen-Mason, S. J., Frusciante, L., Cuciniello, A. & Caruso, G., 1 Dec 2017

    Article in Biomass & bioenergy

  38. An oleuropein β-glucosidase from olive fruit is involved in determining the phenolic composition of virgin olive oil

    Velazquez-Palmero, D., Romero-Segura, C., Garcia-Rodriguez, R., Hernandez, M. L., Vaistij, F. E., Graham, I. A., Perez, A. G. & Martinez-Rivas, J. M., 7 Nov 2017

    Article in Frontiers in Plant Science

  39. Targeted metatranscriptomics of compost derived consortia reveals a GH11 exerting an unusual exo-1,4-β-xylanase activity

    Mello, B., Alessi, A., Riaño-Pachón, D., deAzevedo, E., Guimarães, F., Espirito Santo, M., McQueen Mason, S. J., Bruce, N. C. & Polikarpov, I., 2 Nov 2017

    Article in Biotechnology for biofuels

  40. Jasmonic acid-dependent regulation of seed dormancy following maternal herbivory in Arabidopsis

    Singh, P., Dave, A., Vaistij, F. E., Worrall, D., Holroyd, G., Wells, J., Kaminski, F., Graham, I. A. & Roberts, M., Jun 2017

    Article in New Phytologist

  41. Genetic complexity of miscanthus cell wall composition and biomass quality for biofuels

    van der Weijde, T., Kamei, C. L. A., Severing, E. I., Torres, A. F., Gomez, L. D., Dolstra, O., Maliepaard, C. A., McQueen-Mason, S. J., Visser, R. G. F. & Trindade, L. M., 25 May 2017

    Article in BMC Genomics

  42. Towards financially viable phytoextraction and production of plant-based palladium catalysts

    Harumain, Z. A. S., Parker, H. L., Muñoz García, A., Austin, M. J., McElroy, C. R., Hunt, A. J., Clark, J. H., Meech, J. A., Anderson, C. W. N., Ciacci, L., Graedel, T. E., Bruce, N. C. & Rylott, E. L., 7 Mar 2017

    Article in Environmental science & technology

  43. Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks

    Prigent, S., Frioux, C., Dittami, S. D., Larhlimi, A., Collet, G., Gutknecht, F., Got, J., Eveillard, D., Bourdon, J., Plewniak, F., Tonon, T. & Siegel, A., 27 Jan 2017

    Article in PLoS Computational Biology

  44. Genome sequence and genetic diversity of European ash trees

    Sollars, E., Harper, A. L., Kelly, L., Sambles, C., Ramirez-Gonzalez, R., Swarbreck, D., Kaithakottil, G., Cooper, E., Uauy, C., Havlickova, L., Worswick, G., Studholme, D., Zohren, J., Salmon, D., Clavijo, B., Li, Y., He, Z., Fellgett, A., McKinney, L., Nielsen, L. & 10 others, Douglas, G., Kjaer, E., Downie, A., Boshier, D., Lee, S., Clark, J., Grant, M., Bancroft, I., Caccamo, M. & Buggs, R., 12 Jan 2017

    Article in Nature

  45. Molecular tools to engineer cyanobacteria for industrial biotechnology

    Madsen et al. , 2017.

    Research output: Contribution to conferencePosterpeer-review

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