Search research publications and outputs

  1. 2022
  2. TFIIIC-based chromatin insulators through eukaryotic evolution

    Sizer, R. E., Chahid, N., Butterfield, S. P., Donze, D., Bryant, N. J. & White, R. J., 15 Aug 2022

    Article in Gene

  3. Allele-aware chromosome-level genome assembly of Artemisia annua reveals the correlation between ADS expansion and artemisinin yield

    Liao, B., Shen, X., Xiang, L., Guo, S., Chen, S., Meng, Y., Liang, Y., Ding, D., Bai, J., Zhang, D., Czechowski, T., Li, Y., Yao, H., Ma, T., Howard, C., Sun, C., Liu, H., Liu, J., Pei, J., Gao, J. & 10 others, Wang, J., Qiu, X., Huang, Z., Li, H., Yuan, L., Wei, J., Graham, I. A., Xu, J., Zhang, B. & Chen, S., 4 Aug 2022

    Article in Molecular plant

  4. TIME FOR COFFEE regulates phytochrome A-mediated hypocotyl growth through dawn-phased signaling

    Wang, Y., Su, C., Yu, Y., He, Y., Wei, H., Li, N., Li, H., Duan, J., Li, B., Li, J., Davis, S. J. & Wang, L., 1 Aug 2022

    Article in The Plant Cell

  5. The importance of eco-evolutionary dynamics for predicting and managing insect range shifts

    Wellenreuther, M., Dudaniec, R. Y., Neu, A., Lessard, J-P., Bridle, J., Carbonell, J. A., Diamond, S. E., Marshall, K. E., Parmesan, C., Singer, M. C., Swaegers, J., Thomas, C. D. & Lancaster, L. T., 1 Aug 2022

    Review article in Current Opinion in Insect Science

  6. Bromodomain factor 5 is an essential regulator of transcription in Leishmania

    Jones, N. G., Geoghegan, V., Moore, G., Carnielli, J. B. T., Newling, K., Calderón, F., Gabarró, R., Martín, J., Prinjha, R. K., Rioja, I., Wilkinson, A. J. & Mottram, J. C., 13 Jul 2022

    Article in Nature Communications

  7. Ancestral Sequence Reconstruction for Exploring Alkaloid Evolution

    Lichman, B. R., 23 Jun 2022, Catharanthus roseus: Methods and Protocols. Springer, p. 165-179 15 p. (Methods in molecular biology; vol. 2505).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  8. CKS1 inhibition depletes leukemic stem cells and protects healthy hematopoietic stem cells in acute myeloid leukemia

    Grey, W. G., Rio-Machin, A., Casado, P., Grönroos, E., Ali, S., Miettinen, J. J., Bewicke-Copley, F., Parsons, A., Heckman, C. A., Swanton, C., Cutillas, P. R., Gribben, J., Fitzgibbon, J. & Bonnet, D., 22 Jun 2022

    Article in Science Translational Medicine

  9. Entomological indicators of malaria transmission prior to a cluster-randomized controlled trial of a 'lethal house lure' intervention in central Côte d'Ivoire

    Wolie, R. Z., Koffi, A. A., Ayuk-Taylor, L., Alou, L. P. A., Sternberg, E. D., N'Nan-Alla, O., N'Guessan, Y., Dahounto, A., Oumbouke, W. A., Tia, I. Z., N'Guetta, S-P. A., Cook, J., Thomas, M. B. & N'Guessan, R., 15 Jun 2022

    Article in MALARIA JOURNAL

  10. Barrier forming potential of epithelial cells from the exstrophic bladder

    Hinley, J. S., Duke, R., Jinks, J., Stahlschmidt, J., Keene, D., Cervellione, R. M., Mushtaq, I., De Coppi, P., Garriboli, M. & Southgate, J., 6 Jun 2022

    Article in The American Journal of Pathology

  11. Evaluating Metacognitive Therapy to Improve Treatment of Anxiety and Depression in Cardiovascular Disease: The NIHR Funded PATHWAY Research Programme

    Wells, A., Reeves, D., Heal, C., Davies, L. M., Shields, G. E., Heagerty, A., Fisher, P., Doherty, P. & Capobianco, L., 3 Jun 2022

    Review article in Frontiers in psychiatry

  12. Clonal dynamics of haematopoiesis across the human lifespan

    Mitchell, E., Spencer Chapman, M., Williams, N., Dawson, K. J., Mende, N., Calderbank, E. F., Jung, H., Mitchell, T., Coorens, T. H. H., Spencer, D. H., Machado, H., Lee-Six, H., Davies, M., Hayler, D., Fabre, M. A., Mahbubani, K., Abascal, F., Cagan, A., Vassiliou, G. S., Baxter, J. & 9 others, Martincorena, I., Stratton, M. R., Kent, D. G., Chatterjee, K., Parsy, K. S., Green, A. R., Nangalia, J., Laurenti, E. & Campbell, P. J., 1 Jun 2022

    Article in Nature

  13. Lake and crannog: A 2500-year palaeoenvironmental record of continuity and change in NE Scotland

    Jones, S., Stratigos, M. J., López-Costas, O., Martínez-Cortizas, A., Mighall, T. & Noble, G., 1 Jun 2022

    Article in Quaternary Science Reviews

  14. Critical roles for EGFR and EGFR-HER2 clusters in EGF binding of SW620 human carcinoma cells

    Wollman, A. J. M., Fournier, C., Llorente-Garcia, I., Harriman, O., Payne-Dwyer, A. L., Shashkova, S., Zhou, P., Liu, T-C., Ouaret, D., Wilding, J., Kusumi, A., Bodmer, W. & Leake, M. C., 25 May 2022

    Article in Journal of the Royal Society Interface

  15. Palaeogenomic analysis of black rat (Rattus rattus) reveals multiple European introductions associated with human economic history

    Yu, H., Jamieson, A., Hulme-Beaman, A., Conroy, C. J., Knight, B., Speller, C., Al-Jarah, H., Eager, H., Trinks, A., Adikari, G., Baron, H., Böhlendorf-Arslan, B., Bohingamuwa, W., Crowther, A., Cucchi, T., Esser, K., Fleisher, J., Gidney, L., Gladilina, E., Gol’din, P. & 39 others, Goodman, S. M., Hamilton-Dyer, S., Helm, R., Hillman, J. C., Kallala, N., Kivikero, H., Kovács, Z. E., Kunst, G. K., Kyselý, R., Linderholm, A., Maraoui-Telmini, B., Marković, N., Morales-Muñiz, A., Nabais, M., O’Connor, T., Oueslati, T., Quintana Morales, E. M., Pasda, K., Perera, J., Perera, N., Radbauer, S., Ramon, J., Rannamäe, E., Sanmartí Grego, J., Treasure, E., Valenzuela-Lamas, S., van der Jagt, I., Van Neer, W., Vigne, J. D., Walker, T., Wynne-Jones, S., Zeiler, J., Dobney, K., Boivin, N., Searle, J. B., Krause-Kyora, B., Krause, J., Larson, G. & Orton, D., 3 May 2022

    Article in Nature Communications

  16. Innovative vaccine approaches—a Keystone Symposia report

    Cable, J., Rappuoli, R., Klemm, E. J., Kang, G., Mutreja, A., Wright, G. J., Pizza, M., Castro, S. A., Hoffmann, J. P., Alter, G., Carfi, A., Pollard, A. J., Krammer, F., Gupta, R. K., Wagner, C. E., Machado, V., Modjarrad, K., Corey, L., Gilbert, P. B., Dougan, G. & 14 others, Lurie, N., Bjorkman, P. J., Chiu, C., Nemes, E., Gordon, S. B., Steer, A. C., Rudel, T., Blish, C. A., Sandberg, J. T., Brennan, K., Klugman, K. P., Stuart, L. M., Madhi, S. A. & Karp, C. L., May 2022

    Article in Annals of the New York Academy of Sciences

  17. At high stocking rates, cattle do not functionally replace wild herbivores in shaping understory community composition

    Wells, HBM., Porensky, LM., Veblen, KE., Riginos, C., Stringer, LC., Dougill, AJ., Namoni, M., Ekadeli, J. & Young, TP., 30 Apr 2022

    Article in ECOLOGICAL APPLICATIONS

  18. Re-evaluating the actin-dependence of spectraplakin functions during axon growth and maintenance

    Qu, Y., Alves-Silva, J., Gupta, K., Hahn, I., Parkin, J., Sanchez-Soriano, N. & Prokop, A., 22 Apr 2022

    Article in Developmental Neurobiology

  19. Leaders of war: modelling the evolution of conflict among heterogeneous groups

    Sankey, DWE., Hunt, KL., Croft, DP., Franks, DW., Green, PA., Thompson, FJ., Johnstone, RA. & Cant, MA., 4 Apr 2022

    Article in Philosophical Transactions of the Royal Society B: Biological Sciences

  20. Quantification and assessment of methane emissions from offshore oil and gas facilities on the Norwegian continental shelf

    Foulds, A., Allen, G., Shaw, J. T., Bateson, P., Barker, P. A., Huang, L., Pitt, J. R., Lee, J. D., Wilde, S. E., Dominutti, P., Purvis, R. M., Lowry, D., France, J. L., Fisher, R. E., Fiehn, A., Pühl, M., Bauguitte, S. J. B., Conley, S. A., Smith, M. L., Lachlan-Cope, T. & 2 others, Pisso, I. & Schwietzke, S., 4 Apr 2022

    Article in Atmospheric Chemistry and Physics

  21. Reference-Grade Genome and Large Linear Plasmid of Streptomyces rimosus: Pushing the Limits of Nanopore Sequencing

    Slemc, L., Jakše, J., Filisetti, A., Baranasic, D., Rodríguez-García, A., Del Carratore, F., Marino, S. M., Zucko, J., Starcevic, A., Šala, M., Pérez-Bonilla, M., Sánchez-Hidalgo, M., González, I., Reyes, F., Genilloud, O., Springthorpe, V., Goranovič, D., Kosec, G., Thomas, G. H., Lucrezia, D. D. & 2 others, Petković, H. & Tome, M., 4 Apr 2022

    Article in Microbiology spectrum

  22. Phylogeny-Aware Chemoinformatic Analysis of Chemical Diversity in Lamiaceae Enables Iridoid Pathway Assembly and Discovery of Aucubin Synthase

    Rodríguez-López, C. E., Jiang, Y., Kamileen, M. O., Lichman, B. R., Hong, B., Vaillancourt, B., Buell, C. R. & O'Connor, S. E., 1 Apr 2022

    Article in Molecular Biology and Evolution

  23. Cell Wall Composition Impacts Structural Characteristics of the Stems and Thereby Biomass Yield

    López-Malvar, A., Santiago, R., Souto, X. C., Barros-Rios, J., Gómez, L. D. & Malvar, R. A., 16 Mar 2022

    Article in Journal of Agricultural and Food Chemistry

  24. Biochemical and Elemental Composition of Pelagic Sargassum Biomass Harvested across the Caribbean

    Tonon, T., Botelho MacHado, C., Webber, M., Webber, D., Smith, J., Pilsbury, A., Ciceron, F., Herrera-Rodriguez, L., Jimenez, E. M., Suarez, J. V., Ahearn, M., Gonzalez, F. & Allen, M., 11 Mar 2022

    Article in Phycology

  25. Expansion of the 4-(Diethylamino)benzaldehyde Scaffold to Explore the Impact on Aldehyde Dehydrogenase Activity and Antiproliferative Activity in Prostate Cancer

    Ibrahim, A. I. M., Batlle, E., Sneha, S., Jiménez, R., Pequerul, R., Parés, X., Rüngeler, T., Jha, V., Tuccinardi, T., Sadiq, M., Frame, F., Maitland, N. J., Farrés, J. & Pors, K., 10 Mar 2022

    Article in JOURNAL OF MEDICINAL CHEMISTRY

  26. Bioaugmentation of pilot-scale slow sand filters can achieve compliant levels for the micropollutant metaldehyde in a real water matrix

    Castro Gutiérrez, V., Pickering, L., Cambronero-Heinrichs, JC., Holden, B., Haley, J., Jarvis, P., Jefferson, B., Helgason, T., Moir, J. & Hassard, F., 1 Mar 2022

    Article in Water research

  27. Protocol for a feasibility study of longitudinal surveys to assess the impact of policies on tobacco use among school-going adolescents in South Asia

    Iqbal, R., Mishu, M. P., Siddiqi, K., McNeill, A., Kanaan, M., Jackson, C., Huque, R., Kanan, S., Abdullah, S. M., Fieroze, F., Garg, S., Singh, M. M., Borle, A. L., Deshmukh, C., Akhter, Z., Mazhar, L., Khan, Z., Rehman, K., Ullah, S., Han, L. & 1 others, Readshaw, A., 1 Mar 2022

    Article in F1000research

  28. Induction of APOBEC3-mediated genomic damage in urothelium implicates BK polyomavirus (BKPyV) as a hit-and-run driver for bladder cancer

    Baker, S. C., Mason, A. S., Slip, R., Skinner, K., Macdonald, A., Masood, O., Harris, R. S., Fenton, T. R., Periyasamy, M., Ali, S. & Southgate, J., 22 Feb 2022

    Article in Oncogene

  29. Comparison of model and ground observations finds snowpack and blowing snow both contribute to Arctic tropospheric reactive bromine

    Swanson, W. F., Holmes, C. D., Simpson, W. R., Confer, K., Marelle, L., Thomas, J. L., Jaeglé, L., Alexander, B., Zhai, S., Chen, Q., Wang, X. & Sherwen, T., 16 Feb 2022

    Article in Atmospheric Chemistry and Physics Discussions

  30. Programmable polymorphism of a virus-like particle

    Biela, A. P., Naskalska, A., Fatehi Chenar, F., Twarock, R. & Heddle, J. G., 7 Feb 2022

    Article in Communications Materials

  31. The African SWIFT project: Growing science capability to bring about a revolution in weather prediction

    Parker, DJ., Blyth, AM., Woolnough, SJ., Dougill, AJ., Bain, CL., Coning, E. D., Diop-Kane, M., Foamouhoue, AK., Lamptey, B., Ndiaye, O., Ruti, P., Adefisan, EA., Amekudzi, LK., Antwi-Agyei, P., Birch, C. E., Cafaro, C., Carr, H., Chanzu, B., Coskeran, H., Danuor, SK. & 29 others, Andrade, FM. D., Diakaria, K., Dione, C., Diop, C. A., Fletcher, JK., Gaye, AT., Groves, JL., Gudoshava, M., Hartley, AJ., Hirons, LC., Ibrahim, I., James, TD., Lawal, KA., Marsham, JH., Mutemi, JN., Okogbue, EC., Olaniyan, E., Omotosho, JB., Portuphy, J., Roberts, A. J., Schwendike, J., Segele, ZT., Stein, THM., Taylor, AL., Taylor, CM., Warnaars, TA., Webster, S., Woodhams, BJ. & Youds, L., 1 Feb 2022

    Article in Bulletin of the American Meteorological Society

  32. GCH1 Deficiency Activates Brain Innate Immune Response and Impairs Tyrosine Hydroxylase Homeostasis

    Larbalestier, H., Keatinge, M., Watson, L., White, E., Gowda, S., Wei, W., Koler, K., Semenova, S. A., Elkin, A. M., Rimmer, N., Sweeney, S. T., Mazzolini, J., Sieger, D., Hide, W., McDearmid, J., Panula, P., MacDonald, R. B. & Bandmann, O., 26 Jan 2022

    Article in Journal of neuroscience

  33. Integrated miRNA/cytokine/chemokine profiling reveals severity-associated step changes and principal correlates of fatality in COVID-19

    Wilson, J. C., Kealy, D. J., James, S. R., Plowman, T., Newling, K., Jagger, C., Filbey, K., Mann, E., Konkel, J., Menon, M., Knight, S., Simpson, A., Collaborative Group, CIRCO., Prihartadi, A., Forshaw, G., Todd, N., Yates, D., Grainger, J., Hussell, T., Kaye, P. & 2 others, Signoret, N. Y. M. & Lagos, D., 21 Jan 2022

    Article in iScience

  34. Variability for cell-wall and yield components in commercial sugarcane (Saccharum spp.) progeny: contrasts with parental lines and energy cane

    García, J. M., Silva, M. P., Simister, R., McQueen Mason, S. J., Erazzú, L. E., Gomez, L. D. & Acevedohttps://orcid.org/0000-0002-6415-7504, A., 17 Jan 2022

    Article in Journal of Crop Improvement

  35. Knockout of syntaxin-4 in 3T3-L1 adipocytes reveals new insight into GLUT4 trafficking and adiponectin secretion

    Black, H. L., Livingstone, R., Mastick, C. C., Al Tobi, M., Taylor, H., Geiser, A., Stirrat, L., Kioumourtzoglou, D., Petrie, J. R., Boyle, J. G., Bryant, N. J. & Gould, G. W., 10 Jan 2022

    Article in Journal of Cell Science

  36. 2021
  37. Structural and molecular basis for Cardiovirus 2A protein as a viral gene expression switch

    Hill, C. H., Pekarek, L., Napthine, S., Kibe, A., Firth, A. E., Graham, S. C., Caliskan, N. & Brierley, I., 9 Dec 2021

    Article in Nature Communications

  38. A Non-Canonical Function of Arabidopsis ERECTA Proteins in Gibberellin Signaling

    Davis, S. J., 3 Dec 2021, 51 p. (bioRxiv).

    Research output: Working paperPreprint

  39. Identification of individual root-knot nematodes using low coverage long-read sequencing

    Sellers, G. S., Jeffares, D. C., Lawson, B., Prior, T. & Lunt, D. H., 1 Dec 2021

    Article in PLOS one

  40. Investigating molecular crowding during cell division and hyperosmotic stress in budding yeast with FRET

    Lecinski, S., Shepherd, J. W., Frame, L., Hayton, I., MacDonald, C. & Leake, M. C., 30 Nov 2021, New Methods and Sensors for Membrane and Cell Volume Research. Model, M. A. & Levitan, I. (eds.). Academic Press Inc., p. 75-118 44 p. (Current Topics in Membranes; vol. 88).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  41. Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids

    Bayer, P. E., Scheben, A., Golicz, A. A., Yuan, Y., Faure, S., Lee, H., Chawla, H. S., Anderson, R., Bancroft, I., Raman, H., Lim, Y. P., Robbens, S., Jiang, L., Liu, S., Barker, M. S., Schranz, M. E., Wang, X., King, G. J., Pires, J. C., Chalhoub, B. & 3 others, Snowdon, R. J., Batley, J. & Edwards, D., 30 Nov 2021

    Article in Plant biology

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