Search research publications and outputs

  1. 2022
  2. Application of stranded pelagic sargassum biomass as compost for seedling production in the context of mangrove restoration

    Trench, C., Thomas, S-L., Thorney, D., Maddix, G-M., Francis, P., Small, H., Machado, C. B., Webber, D., Tonon, T. & Webber, M., 6 Sep 2022

    Article in Frontiers in Environmental Science

  3. Effects of CRISPR/Cas9 generated drooping leaf (dl) alleles on midrib and carpel formations in Oryza sativa Nipponbare

    Janthabut, T., Tristianto, C., Sakulkoo, J., Sunvittayakul, P., Suttangkakul, A., Gomez, L. D., Vuttipongchaikij, S. & Sakulsingharoj, C., 22 Aug 2022

    Article in Planta

  4. Exploiting breakdown in nonhost effector-target interactions to boost host disease resistance

    McLellan, H., Harvey, S. E., Steinbrenner, J., Armstrong, M. R., He, Q., Clewes, R., Pritchard, L., Wang, W., Wang, S., Nussbaumer, T., Dohai, B., Luo, Q., Kumari, P., Duan, H., Roberts, A., Boevink, P. C., Neumann, C., Champouret, N., Hein, I., Falter-Braun, P., & 3 othersBeynon, J., Denby, K. & Birch, P. RJ., 22 Aug 2022

    Article in Proceedings of the National Academy of Sciences of the United States of America

  5. Multi-tier archetypes to characterise British landscapes, farmland and farming practices

    Goodwin, C. E. D., Bütikofer, L., Hatfield, J. H., Evans, P. M., Bullock, J. M., Storkey, J., Mead, A., Richter, G. M., Henrys, P. A., Pywell, R. F. & Redhead, J. W., 18 Aug 2022

    Article in Environmental Research Letters

  6. TFIIIC-based chromatin insulators through eukaryotic evolution

    Sizer, R. E., Chahid, N., Butterfield, S. P., Donze, D., Bryant, N. J. & White, R. J., 15 Aug 2022

    Article in Gene

  7. Allele-aware chromosome-level genome assembly of Artemisia annua reveals the correlation between ADS expansion and artemisinin yield

    Liao, B., Shen, X., Xiang, L., Guo, S., Chen, S., Meng, Y., Liang, Y., Ding, D., Bai, J., Zhang, D., Czechowski, T., Li, Y., Yao, H., Ma, T., Howard, C., Sun, C., Liu, H., Liu, J., Pei, J., Gao, J., & 10 othersWang, J., Qiu, X., Huang, Z., Li, H., Yuan, L., Wei, J., Graham, I. A., Xu, J., Zhang, B. & Chen, S., 4 Aug 2022

    Article in Molecular plant

  8. TIME FOR COFFEE regulates phytochrome A-mediated hypocotyl growth through dawn-phased signaling

    Wang, Y., Su, C., Yu, Y., He, Y., Wei, H., Li, N., Li, H., Duan, J., Li, B., Li, J., Davis, S. J. & Wang, L., 1 Aug 2022

    Article in The Plant Cell

  9. Bromodomain factor 5 is an essential regulator of transcription in Leishmania

    Jones, N. G., Geoghegan, V., Moore, G., Carnielli, J. B. T., Newling, K., Calderón, F., Gabarró, R., Martín, J., Prinjha, R. K., Rioja, I., Wilkinson, A. J. & Mottram, J. C., 13 Jul 2022

    Article in Nature Communications

  10. CKS1 inhibition depletes leukemic stem cells and protects healthy hematopoietic stem cells in acute myeloid leukemia

    Grey, W. G., Rio-Machin, A., Casado, P., Grönroos, E., Ali, S., Miettinen, J. J., Bewicke-Copley, F., Parsons, A., Heckman, C. A., Swanton, C., Cutillas, P. R., Gribben, J., Fitzgibbon, J. & Bonnet, D., 22 Jun 2022

    Article in Science Translational Medicine

  11. Social differences in spatial perspectives about local benefits from rehabilitated mangroves: insights from Vietnam

    Carrie, R. H., Stringer, L. C., Van Hue, L. T., Quang, N. H., Van Tan, D., Hackney, C. R., Nga, P. T. T. & Quinn, C. H., 21 Jun 2022

    Article in Ecosystems and People

  12. Entomological indicators of malaria transmission prior to a cluster-randomized controlled trial of a 'lethal house lure' intervention in central Côte d'Ivoire

    Wolie, R. Z., Koffi, A. A., Ayuk-Taylor, L., Alou, L. P. A., Sternberg, E. D., N'Nan-Alla, O., N'Guessan, Y., Dahounto, A., Oumbouke, W. A., Tia, I. Z., N'Guetta, S-P. A., Cook, J., Thomas, M. B. & N'Guessan, R., 15 Jun 2022

    Article in MALARIA JOURNAL

  13. Barrier forming potential of epithelial cells from the exstrophic bladder

    Hinley, J. S., Duke, R., Jinks, J., Stahlschmidt, J., Keene, D., Cervellione, R. M., Mushtaq, I., De Coppi, P., Garriboli, M. & Southgate, J., 6 Jun 2022

    Article in The American Journal of Pathology

  14. Clonal dynamics of haematopoiesis across the human lifespan

    Mitchell, E., Spencer Chapman, M., Williams, N., Dawson, K. J., Mende, N., Calderbank, E. F., Jung, H., Mitchell, T., Coorens, T. H. H., Spencer, D. H., Machado, H., Lee-Six, H., Davies, M., Hayler, D., Fabre, M. A., Mahbubani, K., Abascal, F., Cagan, A., Vassiliou, G. S., Baxter, J., & 9 othersMartincorena, I., Stratton, M. R., Kent, D. G., Chatterjee, K., Parsy, K. S., Green, A. R., Nangalia, J., Laurenti, E. & Campbell, P. J., 1 Jun 2022

    Article in Nature

  15. Lake and crannog: A 2500-year palaeoenvironmental record of continuity and change in NE Scotland

    Jones, S., Stratigos, M. J., López-Costas, O., Martínez-Cortizas, A., Mighall, T. & Noble, G., 1 Jun 2022

    Article in Quaternary Science Reviews

  16. Critical roles for EGFR and EGFR-HER2 clusters in EGF binding of SW620 human carcinoma cells

    Wollman, A. J. M., Fournier, C., Llorente-Garcia, I., Harriman, O., Payne-Dwyer, A. L., Shashkova, S., Zhou, P., Liu, T-C., Ouaret, D., Wilding, J., Kusumi, A., Bodmer, W. & Leake, M. C., 25 May 2022

    Article in Journal of the Royal Society Interface

  17. ETS transcription factor ELF3 (ESE-1) is a cell cycle regulator in benign and malignant prostate

    Archer, L. K., Frame, F. M., Walker, H. F., Droop, A. P., McDonald, G. L. K., Kucko, S., Berney, D. M., Mann, V. M., Simms, M. S. & Maitland, N. J., 6 May 2022

    Article in FEBS open bio

  18. Palaeogenomic analysis of black rat (Rattus rattus) reveals multiple European introductions associated with human economic history

    Yu, H., Jamieson, A., Hulme-Beaman, A., Conroy, C. J., Knight, B., Speller, C., Al-Jarah, H., Eager, H., Trinks, A., Adikari, G., Baron, H., Böhlendorf-Arslan, B., Bohingamuwa, W., Crowther, A., Cucchi, T., Esser, K., Fleisher, J., Gidney, L., Gladilina, E., Gol’din, P., & 39 othersGoodman, S. M., Hamilton-Dyer, S., Helm, R., Hillman, J. C., Kallala, N., Kivikero, H., Kovács, Z. E., Kunst, G. K., Kyselý, R., Linderholm, A., Maraoui-Telmini, B., Marković, N., Morales-Muñiz, A., Nabais, M., O’Connor, T., Oueslati, T., Quintana Morales, E. M., Pasda, K., Perera, J., Perera, N., Radbauer, S., Ramon, J., Rannamäe, E., Sanmartí Grego, J., Treasure, E., Valenzuela-Lamas, S., van der Jagt, I., Van Neer, W., Vigne, J. D., Walker, T., Wynne-Jones, S., Zeiler, J., Dobney, K., Boivin, N., Searle, J. B., Krause-Kyora, B., Krause, J., Larson, G. & Orton, D., 3 May 2022

    Article in Nature Communications

  19. Innovative vaccine approaches—a Keystone Symposia report

    Cable, J., Rappuoli, R., Klemm, E. J., Kang, G., Mutreja, A., Wright, G. J., Pizza, M., Castro, S. A., Hoffmann, J. P., Alter, G., Carfi, A., Pollard, A. J., Krammer, F., Gupta, R. K., Wagner, C. E., Machado, V., Modjarrad, K., Corey, L., Gilbert, P. B., Dougan, G., & 14 othersLurie, N., Bjorkman, P. J., Chiu, C., Nemes, E., Gordon, S. B., Steer, A. C., Rudel, T., Blish, C. A., Sandberg, J. T., Brennan, K., Klugman, K. P., Stuart, L. M., Madhi, S. A. & Karp, C. L., May 2022

    Article in Annals of the New York Academy of Sciences

  20. At high stocking rates, cattle do not functionally replace wild herbivores in shaping understory community composition

    Wells, HBM., Porensky, LM., Veblen, KE., Riginos, C., Stringer, LC., Dougill, AJ., Namoni, M., Ekadeli, J. & Young, TP., 30 Apr 2022

    Article in ECOLOGICAL APPLICATIONS

  21. Re-evaluating the actin-dependence of spectraplakin functions during axon growth and maintenance

    Qu, Y., Alves-Silva, J., Gupta, K., Hahn, I., Parkin, J., Sanchez-Soriano, N. & Prokop, A., 22 Apr 2022

    Article in Developmental Neurobiology

  22. Leaders of war: modelling the evolution of conflict among heterogeneous groups

    Sankey, DWE., Hunt, KL., Croft, DP., Franks, DW., Green, PA., Thompson, FJ., Johnstone, RA. & Cant, MA., 4 Apr 2022

    Article in Philosophical Transactions of the Royal Society B: Biological Sciences

  23. Quantification and assessment of methane emissions from offshore oil and gas facilities on the Norwegian continental shelf

    Foulds, A., Allen, G., Shaw, J. T., Bateson, P., Barker, P. A., Huang, L., Pitt, J. R., Lee, J. D., Wilde, S. E., Dominutti, P., Purvis, R. M., Lowry, D., France, J. L., Fisher, R. E., Fiehn, A., Pühl, M., Bauguitte, S. J. B., Conley, S. A., Smith, M. L., Lachlan-Cope, T., & 2 othersPisso, I. & Schwietzke, S., 4 Apr 2022

    Article in Atmospheric Chemistry and Physics

  24. Reference-Grade Genome and Large Linear Plasmid of Streptomyces rimosus: Pushing the Limits of Nanopore Sequencing

    Slemc, L., Jakše, J., Filisetti, A., Baranasic, D., Rodríguez-García, A., Del Carratore, F., Marino, S. M., Zucko, J., Starcevic, A., Šala, M., Pérez-Bonilla, M., Sánchez-Hidalgo, M., González, I., Reyes, F., Genilloud, O., Springthorpe, V., Goranovič, D., Kosec, G., Thomas, G. H., Lucrezia, D. D., & 2 othersPetković, H. & Tome, M., 4 Apr 2022

    Article in Microbiology spectrum

  25. Phylogeny-Aware Chemoinformatic Analysis of Chemical Diversity in Lamiaceae Enables Iridoid Pathway Assembly and Discovery of Aucubin Synthase

    Rodríguez-López, C. E., Jiang, Y., Kamileen, M. O., Lichman, B. R., Hong, B., Vaillancourt, B., Buell, C. R. & O'Connor, S. E., 1 Apr 2022

    Article in Molecular Biology and Evolution

  26. Cell Wall Composition Impacts Structural Characteristics of the Stems and Thereby Biomass Yield

    López-Malvar, A., Santiago, R., Souto, X. C., Barros-Rios, J., Gómez, L. D. & Malvar, R. A., 16 Mar 2022

    Article in Journal of Agricultural and Food Chemistry

  27. Biochemical and Elemental Composition of Pelagic Sargassum Biomass Harvested across the Caribbean

    Tonon, T., Botelho MacHado, C., Webber, M., Webber, D., Smith, J., Pilsbury, A., Ciceron, F., Herrera-Rodriguez, L., Jimenez, E. M., Suarez, J. V., Ahearn, M., Gonzalez, F. & Allen, M., 11 Mar 2022

    Article in Phycology

  28. Expansion of the 4-(Diethylamino)benzaldehyde Scaffold to Explore the Impact on Aldehyde Dehydrogenase Activity and Antiproliferative Activity in Prostate Cancer

    Ibrahim, A. I. M., Batlle, E., Sneha, S., Jiménez, R., Pequerul, R., Parés, X., Rüngeler, T., Jha, V., Tuccinardi, T., Sadiq, M., Frame, F., Maitland, N. J., Farrés, J. & Pors, K., 10 Mar 2022

    Article in JOURNAL OF MEDICINAL CHEMISTRY

  29. Bioaugmentation of pilot-scale slow sand filters can achieve compliant levels for the micropollutant metaldehyde in a real water matrix

    Castro Gutiérrez, V., Pickering, L., Cambronero-Heinrichs, JC., Holden, B., Haley, J., Jarvis, P., Jefferson, B., Helgason, T., Moir, J. & Hassard, F., 1 Mar 2022

    Article in Water research

  30. Protocol for a feasibility study of longitudinal surveys to assess the impact of policies on tobacco use among school-going adolescents in South Asia

    Iqbal, R., Mishu, M. P., Siddiqi, K., McNeill, A., Kanaan, M., Jackson, C., Huque, R., Kanan, S., Abdullah, S. M., Fieroze, F., Garg, S., Singh, M. M., Borle, A. L., Deshmukh, C., Akhter, Z., Mazhar, L., Khan, Z., Rehman, K., Ullah, S., Han, L., & 1 othersReadshaw, A., 1 Mar 2022

    Article in F1000research

  31. Transformations to Regenerative Food Systems- An outline of the FixOurFood project

    Doherty, B., Bryant, M., Denby, K., Fazey, I. R. A., Bridle, S., Hawkes, C., Cain, M., Banwart, S., Collins, L., Pickett, K., Allen, M., Ball, P. D., Gardner, G. E., Carmen, E., Sinclair, M., Kluczkovski, A., Ehgartner, U., Morris, B., James, A., Yap, C., & 2 othersOm, S. & Connolly, A., Mar 2022

    Article in Nutrition Bulletin

  32. Induction of APOBEC3-mediated genomic damage in urothelium implicates BK polyomavirus (BKPyV) as a hit-and-run driver for bladder cancer

    Baker, S. C., Mason, A. S., Slip, R., Skinner, K., Macdonald, A., Masood, O., Harris, R. S., Fenton, T. R., Periyasamy, M., Ali, S. & Southgate, J., 22 Feb 2022

    Article in Oncogene

  33. Comparison of model and ground observations finds snowpack and blowing snow both contribute to Arctic tropospheric reactive bromine

    Swanson, W. F., Holmes, C. D., Simpson, W. R., Confer, K., Marelle, L., Thomas, J. L., Jaeglé, L., Alexander, B., Zhai, S., Chen, Q., Wang, X. & Sherwen, T., 16 Feb 2022

    Article in Atmospheric Chemistry and Physics Discussions

  34. Programmable polymorphism of a virus-like particle

    Biela, A. P., Naskalska, A., Fatehi Chenar, F., Twarock, R. & Heddle, J. G., 7 Feb 2022

    Article in Communications Materials

  35. The African SWIFT project: Growing science capability to bring about a revolution in weather prediction

    Parker, DJ., Blyth, AM., Woolnough, SJ., Dougill, AJ., Bain, CL., Coning, E. D., Diop-Kane, M., Foamouhoue, AK., Lamptey, B., Ndiaye, O., Ruti, P., Adefisan, EA., Amekudzi, LK., Antwi-Agyei, P., Birch, C. E., Cafaro, C., Carr, H., Chanzu, B., Coskeran, H., Danuor, SK., & 29 othersAndrade, FM. D., Diakaria, K., Dione, C., Diop, C. A., Fletcher, JK., Gaye, AT., Groves, JL., Gudoshava, M., Hartley, AJ., Hirons, LC., Ibrahim, I., James, TD., Lawal, KA., Marsham, JH., Mutemi, JN., Okogbue, EC., Olaniyan, E., Omotosho, JB., Portuphy, J., Roberts, A. J., Schwendike, J., Segele, ZT., Stein, THM., Taylor, AL., Taylor, CM., Warnaars, TA., Webster, S., Woodhams, BJ. & Youds, L., 1 Feb 2022

    Article in Bulletin of the American Meteorological Society

  36. GCH1 Deficiency Activates Brain Innate Immune Response and Impairs Tyrosine Hydroxylase Homeostasis

    Larbalestier, H., Keatinge, M., Watson, L., White, E., Gowda, S., Wei, W., Koler, K., Semenova, S. A., Elkin, A. M., Rimmer, N., Sweeney, S. T., Mazzolini, J., Sieger, D., Hide, W., McDearmid, J., Panula, P., MacDonald, R. B. & Bandmann, O., 26 Jan 2022

    Article in Journal of neuroscience

  37. Integrated miRNA/cytokine/chemokine profiling reveals severity-associated step changes and principal correlates of fatality in COVID-19

    Wilson, J. C., Kealy, D. J., James, S. R., Plowman, T., Newling, K., Jagger, C., Filbey, K., Mann, E., Konkel, J., Menon, M., Knight, S., Simpson, A., Collaborative Group, CIRCO., Prihartadi, A., Forshaw, G., Todd, N., Yates, D., Grainger, J., Hussell, T., Kaye, P., & 2 othersSignoret, N. Y. M. & Lagos, D., 21 Jan 2022

    Article in iScience

  38. Variability for cell-wall and yield components in commercial sugarcane (Saccharum spp.) progeny: contrasts with parental lines and energy cane

    García, J. M., Silva, M. P., Simister, R., McQueen Mason, S. J., Erazzú, L. E., Gomez, L. D. & Acevedohttps://orcid.org/0000-0002-6415-7504, A., 17 Jan 2022

    Article in Journal of Crop Improvement

  39. Knockout of syntaxin-4 in 3T3-L1 adipocytes reveals new insight into GLUT4 trafficking and adiponectin secretion

    Black, H. L., Livingstone, R., Mastick, C. C., Al Tobi, M., Taylor, H., Geiser, A., Stirrat, L., Kioumourtzoglou, D., Petrie, J. R., Boyle, J. G., Bryant, N. J. & Gould, G. W., 10 Jan 2022

    Article in Journal of Cell Science

  40. 2021
  41. Structural and molecular basis for Cardiovirus 2A protein as a viral gene expression switch

    Hill, C. H., Pekarek, L., Napthine, S., Kibe, A., Firth, A. E., Graham, S. C., Caliskan, N. & Brierley, I., 9 Dec 2021

    Article in Nature Communications

  42. Identification of individual root-knot nematodes using low coverage long-read sequencing

    Sellers, G. S., Jeffares, D. C., Lawson, B., Prior, T. & Lunt, D. H., 1 Dec 2021

    Article in PLOS one

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