Search research publications and outputs

  1. 2019
  2. Insights into microbial community structure and diversity in oil palm waste compost

    Khalid, N. A., Rajandas, H., Parimannan, S., Croft, L. J., Loke, S., Chong, C. S., Bruce, N. C. & Yahya, A., 1 Oct 2019

    Article in 3 Biotech

  3. 2018
  4. The low-oxygen response is triggered by an ATP-dependent shift in oleoyl-CoA in Arabidopsis

    Schmidt, R., Fulda, M., Paul, M., Anders, M., Plum, F., Weits, D., Kosmacz, M., Larson, T., Graham, I. A., Beemster, G., Licausi, F., Gelgenberger, P., Schippers, J. & van Dongen, J. T., 18 Dec 2018

    Article in Proceedings of the National Academy of Sciences of the United States of America

  5. Hemocyanin facilitates lignocellulose digestion by wood-boring marine crustaceans

    Besser, K., Malyon, G. P., Eborall, W. S., Paro da Cunha, G., Goncalves Filgueiras, J., Dowle, A., Cruz Garcia, L., Page, S. J., Dupree, R., Kern, M. F., Gomez, L. D., Li, Y., Elias, L., Sabbadin, F., Mohamad, S. E., Pesante, G., Steele-King, C. G., Ribeiro de Azevedo, E., Polikarpov, I., Dupree, P. & 3 others, Cragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 3 Dec 2018

    Article in Nature Communications

  6. Isoprostanoids quantitative profiling of marine red and brown macroalgae

    Vigor, C., Reversat, G., Rocher, A., Oger, C., Galano, J-M., Vercauteren, J., Durand, T., Tonon, T., Leblanc, C. & Potin, P., 1 Dec 2018

    Article in Food Chemistry

  7. Plant–Rhizobium symbiosis, seed nutraceuticals, and waste quality for energy production of Vicia faba L. as affected by crop management

    Amalfitano, C., Gomez, L. D., Frendo, P., De Pascale, S., Pepe, O., Simister, R., Ventorino, V., Agrelli, D., Borrelli, C., McQueen-Mason, S. J. & Caruso, G., 1 Dec 2018

    Article in Chemical and Biological Technologies in Agriculture

  8. Response of cell wall composition and RNA-seq transcriptome to methyl-jasmonate in Brachypodium distachyon callus

    Hyde, L. S., Pellny, T. K., Freeman, J., Michaelson, L. V., Simister, R., McQueen Mason, S. J. & Mitchell, R. A. C., 1 Nov 2018

    Article in Planta

  9. The opium poppy genome and morphinan production.

    Guo, L., Winzer, T. H., Yang, X., Li, Y., Ning, Z., He, Z., Teodor, R. I., Lu, Y., Bowser, T., Graham, I. A. & Ye, K., 19 Oct 2018

    Article in Science

  10. Uncovering the molecular mechanisms of lignocellulose digestion in shipworms

    Sabbadin, F., Pesante, G., Elias, L., Besser, K., Li, Y., Steele-King, C. G., Stark, M., Rathbone, D. A., Dowle, A., Bates, R., Shipway, J. R., Cragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 7 Mar 2018

    Article in Biotechnology for biofuels

  11. 2017
  12. Valorising faba bean residual biomass: Effect of farming system and planting time on the potential for biofuel production

    Gómez, L. D., Amalfitano, C., Andolfi, A., Simister, R., Somma, S., Ercolano, M. R., Borrelli, C., McQueen-Mason, S. J., Frusciante, L., Cuciniello, A. & Caruso, G., 1 Dec 2017

    Article in Biomass & bioenergy

  13. An oleuropein β-glucosidase from olive fruit is involved in determining the phenolic composition of virgin olive oil

    Velazquez-Palmero, D., Romero-Segura, C., Garcia-Rodriguez, R., Hernandez, M. L., Vaistij, F. E., Graham, I. A., Perez, A. G. & Martinez-Rivas, J. M., 7 Nov 2017

    Article in Frontiers in Plant Science

  14. Targeted metatranscriptomics of compost derived consortia reveals a GH11 exerting an unusual exo-1,4-β-xylanase activity

    Mello, B., Alessi, A., Riaño-Pachón, D., deAzevedo, E., Guimarães, F., Espirito Santo, M., McQueen Mason, S. J., Bruce, N. C. & Polikarpov, I., 2 Nov 2017

    Article in Biotechnology for biofuels

  15. Jasmonic acid-dependent regulation of seed dormancy following maternal herbivory in Arabidopsis

    Singh, P., Dave, A., Vaistij, F. E., Worrall, D., Holroyd, G., Wells, J., Kaminski, F., Graham, I. A. & Roberts, M., Jun 2017

    Article in New Phytologist

  16. Genetic complexity of miscanthus cell wall composition and biomass quality for biofuels

    van der Weijde, T., Kamei, C. L. A., Severing, E. I., Torres, A. F., Gomez, L. D., Dolstra, O., Maliepaard, C. A., McQueen-Mason, S. J., Visser, R. G. F. & Trindade, L. M., 25 May 2017

    Article in BMC Genomics

  17. Towards financially viable phytoextraction and production of plant-based palladium catalysts

    Harumain, Z. A. S., Parker, H. L., Muñoz García, A., Austin, M. J., McElroy, C. R., Hunt, A. J., Clark, J. H., Meech, J. A., Anderson, C. W. N., Ciacci, L., Graedel, T. E., Bruce, N. C. & Rylott, E. L., 7 Mar 2017

    Article in Environmental science & technology

  18. Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks

    Prigent, S., Frioux, C., Dittami, S. D., Larhlimi, A., Collet, G., Gutknecht, F., Got, J., Eveillard, D., Bourdon, J., Plewniak, F., Tonon, T. & Siegel, A., 27 Jan 2017

    Article in PLoS Computational Biology

  19. Genome sequence and genetic diversity of European ash trees

    Sollars, E., Harper, A. L., Kelly, L., Sambles, C., Ramirez-Gonzalez, R., Swarbreck, D., Kaithakottil, G., Cooper, E., Uauy, C., Havlickova, L., Worswick, G., Studholme, D., Zohren, J., Salmon, D., Clavijo, B., Li, Y., He, Z., Fellgett, A., McKinney, L., Nielsen, L. & 10 others, Douglas, G., Kjaer, E., Downie, A., Boshier, D., Lee, S., Clark, J., Grant, M., Bancroft, I., Caccamo, M. & Buggs, R., 12 Jan 2017

    Article in Nature

  20. 2016
  21. Linkage Mapping of Stem Saccharification Digestibility in Rice

    Liu, B., Gómez, L. D., Hua, C., Sun, L., Ali, I., Huang, L., Yu, C., Simister, R., Steele-King, C., Gan, Y. & McQueen-Mason, S. J., 12 Jul 2016

    Article in PLoS ONE

  22. The breakdown of stored triacylglycerols is required during light-induced stomatal opening.

    McLachlan, D. H., Lan, J., Geilfus, C-M., Dodd, A. N., Larson, TR., Baker, A., Horak, H., Kollist, H., He, Z., Graham, I. A., Mickelbart, M. V. & Hetherington, A. M., 7 Mar 2016

    Article in Current Biology

  23. Genetic diversity of eight millet genera assessed by using molecular and morphological markers

    Dvořáková, Z., Čepková, P. H., Viehmannová, I., Havlicková, L. & Janovská, D., 29 Feb 2016

    Article in Crop and Pasture Science

  24. The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea

    Olsen, J. L., Rouzé, P., Verhelst, B., Lin, Y-C., Bayer, T., Collen, J., Dattolo, E., De Paoli, E., Dittami, S., Maumus, F., Michel, G., Kersting, A., Lauritano, C., Lohaus, R., Töpel, M., Tonon, T., Vanneste, K., Amirebrahimi, M., Brakel, J., Boström, C. & 15 others, Chovatia, M., Grimwood, J., Jenkins, J. W., Jueterbock, A., Mraz, A., Stam, W. T., Tice, H., Bornberg-Bauer, E., Green, P. J., Pearson, G. A., Procaccini, G., Duarte, C. M., Schmutz, J., Reusch, T. B. H. & Van de Peer, Y., 18 Feb 2016

    Article in Nature

  25. Host-microbe interactions as a driver of acclimation to salinity gradients in brown algal cultures

    Dittami, S. M., Duboscq-Bidot, L., Perennou, M., Gobet, A., Gobet, A., Corre, E., Boyen, C. & Tonon, T., Jan 2016

    Article in The ISME Journal

  26. 2015
  27. Lignocellulose degradation mechanisms across the Tree of Life

    Cragg, S. M., Beckham, G. T., Bruce, N. C., Bugg, T. D. H., Distel, D. L., Dupree, P., Etxabe, A. G., Goodell, B. S., Jellison, J., McGeehan, J. E., McQueen-Mason, S. J., Schnorr, K., Walton, P. H., Watts, J. E. M. & Zimmer, M., Dec 2015

    Review article in Current Opinion in Chemical Biology

  28. Identification of QTL markers contributing to plant growth, oil yield and fatty acid composition in the oilseed crop Jatropha curcas L

    King, A. J., Montes, L., Clarke, J. G., Iztep, J., Perez, C. A. A., Jongschaap, R. E. E., Visser, R. G. F., van Loo, E. & Graham, I. A., 25 Sep 2015

    Article in Biotechnology for biofuels

  29. Morphinan biosynthesis in opium poppy requires a P450-oxidoreductase fusion protein

    Winzer, T. H., Kern, M. F., King, A. J., Larson, TR., Teodor, R. I., Donninger, S., Li, Y., Dowle, A., Cartwright, J., Bates, R., David, A., Thomas, J., Walker, C., Bowser, T. & Graham, I. A., 17 Jul 2015

    Article in Science

  30. Effect of Brassica napus cultivar on cellulosic ethanol yield

    Wood, I. P., Wellner, N., Elliston, A., Wilson, D. R., Bancroft, I. & Waldron, K. W., 11 Jul 2015

    Article in Biotechnology for biofuels

  31. Expression of fungal acetyl xylan esterase in Arabidopsis thaliana improves saccharification of stem lignocellulose.

    Pawar, P. M-A., Derba-Maceluch, M., Chong, S-L., Gomez, L. D., Miedes, E., Ratke, C., Gaertner, C., Mouille, G., McQueen Mason, S. J., Molina, A., Sellstedt, A., Tenkanen, M. & Mellerowicz, E., 11 May 2015

    Article in Plant biotechnology journal

  32. Marine systems biology

    Tonon, T. & Eveillard, D., May 2015

    Editorial in Frontiers in genetics

  33. Monoclonal antibodies directed to fucoidan preparations from brown algae

    Torode, T. A., Marcus, S. E., Jam, M., Tonon, T., Blackburn, R. S., Hervé, C. & Knox, J. P., 18 Feb 2015

    Article in PLoS ONE

  34. Residual biomass saccharification in processing tomato is affected by cultivar and nitrogen fertilization

    Ercolano, M. R., Gomez, L. D., Andolfi, A., Simister, R., Troise, C., Angelino, G., Borrelli, C., McQueen-Mason, S. J., Evidente, A., Frusciante, L. & Caruso, G., Jan 2015

    Article in Biomass & bioenergy

  35. 2014
  36. Side by Side Comparison of Chemical Compounds Generated by Aqueous Pretreatments of Maize Stover, Miscanthus and Sugarcane Bagasse

    Gómez, L. D., Vanholme, R., Bird, S., Goeminne, G., Trindade, L. M., Polikarpov, I., Simister, R., Morreel, K., Boerjan, W. & McQueen Mason, S. J., Dec 2014

    Article in BioEnergy Research

  37. The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond

    Prigent, S., Collet, G., Dittami, S. M., Delage, L., Ethis de Corny, F., Dameron, O., Eveillard, D., Thiele, S., Cambefort, J., Boyen, C., Siegel, A. & Tonon, T., Oct 2014

    Article in The Plant journal

  38. Genome and metabolic network of "Candidatus Phaeomarinobacter ectocarpi" Ec32, a new candidate genus of Alphaproteobacteria frequently associated with brown algae

    Dittami, S. M., Barbeyron, T., Boyen, C., Cambefort, J., Collet, G., Delage, L., Gobet, A., Groisillier, A., Leblanc, C., Michel, G., Scornet, D., Siegel, A., Tapia, J. E. & Tonon, T., 25 Jul 2014

    Article in Frontiers in genetics

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