Search research publications and outputs

  1. 2022
  2. Large scale, single-cell FRET-based glucose uptake measurements within heterogeneous populations

    Wollman, A. J. M., Kioumourtzoglou, D., Ward, R., Gould, G. W. & Bryant, N. J., 15 Apr 2022

    Article in iScience

  3. Leaders of war: modelling the evolution of conflict among heterogeneous groups

    Sankey, DWE., Hunt, KL., Croft, DP., Franks, DW., Green, PA., Thompson, FJ., Johnstone, RA. & Cant, MA., 4 Apr 2022

    Article in Philosophical Transactions of the Royal Society B: Biological Sciences

  4. Quantification and assessment of methane emissions from offshore oil and gas facilities on the Norwegian continental shelf

    Foulds, A., Allen, G., Shaw, J. T., Bateson, P., Barker, P. A., Huang, L., Pitt, J. R., Lee, J. D., Wilde, S. E., Dominutti, P., Purvis, R. M., Lowry, D., France, J. L., Fisher, R. E., Fiehn, A., Pühl, M., Bauguitte, S. J. B., Conley, S. A., Smith, M. L., Lachlan-Cope, T. & 2 others, Pisso, I. & Schwietzke, S., 4 Apr 2022

    Article in Atmospheric Chemistry and Physics

  5. Reference-Grade Genome and Large Linear Plasmid of Streptomyces rimosus: Pushing the Limits of Nanopore Sequencing

    Slemc, L., Jakše, J., Filisetti, A., Baranasic, D., Rodríguez-García, A., Del Carratore, F., Marino, S. M., Zucko, J., Starcevic, A., Šala, M., Pérez-Bonilla, M., Sánchez-Hidalgo, M., González, I., Reyes, F., Genilloud, O., Springthorpe, V., Goranovič, D., Kosec, G., Thomas, G. H., Lucrezia, D. D. & 2 others, Petković, H. & Tome, M., 4 Apr 2022

    Article in Microbiology spectrum

  6. Biochemical and Elemental Composition of Pelagic Sargassum Biomass Harvested across the Caribbean

    Tonon, T., Botelho MacHado, C., Webber, M., Webber, D., Smith, J., Pilsbury, A., Ciceron, F., Herrera-Rodriguez, L., Jimenez, E. M., Suarez, J. V., Ahearn, M., Gonzalez, F. & Allen, M., 11 Mar 2022

    Article in Phycology

  7. Expansion of the 4-(Diethylamino)benzaldehyde Scaffold to Explore the Impact on Aldehyde Dehydrogenase Activity and Antiproliferative Activity in Prostate Cancer

    Ibrahim, A. I. M., Batlle, E., Sneha, S., Jiménez, R., Pequerul, R., Parés, X., Rüngeler, T., Jha, V., Tuccinardi, T., Sadiq, M., Frame, F., Maitland, N. J., Farrés, J. & Pors, K., 10 Mar 2022

    Article in JOURNAL OF MEDICINAL CHEMISTRY

  8. Bioaugmentation of pilot-scale slow sand filters can achieve compliant levels for the micropollutant metaldehyde in a real water matrix

    Castro Gutiérrez, V., Pickering, L., Cambronero-Heinrichs, JC., Holden, B., Haley, J., Jarvis, P., Jefferson, B., Helgason, T., Moir, J. & Hassard, F., 1 Mar 2022

    Article in Water research

  9. Comparison of model and ground observations finds snowpack and blowing snow both contribute to Arctic tropospheric reactive bromine

    Swanson, W. F., Holmes, C. D., Simpson, W. R., Confer, K., Marelle, L., Thomas, J. L., Jaeglé, L., Alexander, B., Zhai, S., Chen, Q., Wang, X. & Sherwen, T., 16 Feb 2022

    Article in Atmospheric Chemistry and Physics Discussions

  10. Programmable polymorphism of a virus-like particle

    Biela, A. P., Naskalska, A., Fatehi Chenar, F., Twarock, R. & Heddle, J. G., 7 Feb 2022

    Article in Communications Materials

  11. Integrated miRNA/cytokine/chemokine profiling reveals severity-associated step changes and principal correlates of fatality in COVID-19

    Wilson, J. C., Kealy, D. J., James, S. R., Plowman, T., Newling, K., Jagger, C., Filbey, K., Mann, E., Konkel, J., Menon, M., Knight, S., Simpson, A., Collaborative Group, CIRCO., Prihartadi, A., Forshaw, G., Todd, N., Yates, D., Grainger, J., Hussell, T., Kaye, P. & 2 others, Signoret, N. Y. M. & Lagos, D., 21 Jan 2022

    Article in iScience

  12. 2021
  13. Structural and molecular basis for Cardiovirus 2A protein as a viral gene expression switch

    Hill, C. H., Pekarek, L., Napthine, S., Kibe, A., Firth, A. E., Graham, S. C., Caliskan, N. & Brierley, I., 9 Dec 2021

    Article in Nature Communications

  14. A Non-Canonical Function of Arabidopsis ERECTA Proteins in Gibberellin Signaling

    Davis, S. J., 3 Dec 2021, 51 p. (bioRxiv).

    Research output: Working paperPreprint

  15. Identification of individual root-knot nematodes using low coverage long-read sequencing

    Sellers, G. S., Jeffares, D. C., Lawson, B., Prior, T. & Lunt, D. H., 1 Dec 2021

    Article in PLOS one

  16. Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids

    Bayer, P. E., Scheben, A., Golicz, A. A., Yuan, Y., Faure, S., Lee, H., Chawla, H. S., Anderson, R., Bancroft, I., Raman, H., Lim, Y. P., Robbens, S., Jiang, L., Liu, S., Barker, M. S., Schranz, M. E., Wang, X., King, G. J., Pires, J. C., Chalhoub, B. & 3 others, Snowdon, R. J., Batley, J. & Edwards, D., 30 Nov 2021

    Article in Plant biology

  17. Search for in-band transitions in the candidate superdeformed band in Si 28

    Morris, L., Jenkins, D. G., Harakeh, M. N., Isaak, J., Kobayashi, N., Tamii, A., Adachi, S., Adsley, P., Aoi, N., Bracco, A., Brown, A., Carpenter, M. P., Carroll, J. J., Courtin, S., Crespi, F. C. L., Davies, P. J., Fruet, G., Fang, Y. D., Fujita, H., Gey, G. & 22 others, Hoang, T. H., Ichige, N., Ideguchi, E., Inoue, A., Iwamoto, C., Koike, T., Raju, M. K., Liu, M. L., Montanari, D., Von Neumann-Cosel, P., Noji, S., Ong, H. J., Savran, D., Schmitt, J. M., Sullivan, C., Wasilewska, B., Weinert, M., Werner, V., Yamamoto, Y., Zegers, R. G. T., Zhou, X. H. & Zhu, S., 30 Nov 2021

    Article in Physical Review C

  18. Chromosome segregation in Archaea: SegA– and SegB–DNA complex structures provide insights into segrosome assembly

    Yen, C-Y., Lin, M-G., Chen, B-W., Ng, I. W. L., Read, N., Kabli, A., Wu, C-T., Shen, Y-Y., Chen, C-H., Barilla, D., Sun, Y-J. & Hsiao, C-D., 29 Nov 2021

    Article in Nucleic Acids Research

  19. Targeted therapy for LIMD1-deficient non-small cell lung cancer subtypes

    Davidson, K., Grevitt, P., Contreras-Gerenas, M. F., Bridge, K. S., Hermida, M., Shah, K. M., Mardakheh, F. K., Stubbs, M., Burke, R., Casado, P., Cutillas, P. R., Martin, S. A. & Sharp, T. V., 11 Nov 2021

    Article in Cell death & disease

  20. Investigating molecular mechanisms of 2A-stimulated ribosomal pausing and frameshifting in Theilovirus

    Hill, C. H., Cook, G. M., Napthine, S., Kibe, A., Brown, K., Caliskan, N., Firth, A. E., Graham, S. C. & Brierley, I., 9 Nov 2021

    Article in Nucleic Acids Research

  21. Characterisation of the enzyme transport path between shipworms and their bacterial symbionts

    Pesante, G., Sabbadin, F., Elias, L., Steele-King, C., Shipway, J. R., Dowle, A., Li, Y., Busse-Wicher, M., Dupree, P., Besser, K., Cragg, S. M., Bruce, N. C. & McQueen Mason, S. J., 1 Nov 2021

    Article in BMC Biology

  22. Measurement of Compton scattering at MAMI for the extraction of the electric and magnetic polarizabilities of the proton

    (A2 Collaboration at MAMI), 29 Oct 2021, arXiv, 7 p.

    Research output: Working paperPreprint

  23. Plasmid fitness costs are caused by specific genetic conflicts enabling resolution by compensatory mutation

    Hall, J. P. J., Wright, R., Harrison, E., Muddiman, K. J., Wood, A. J., Paterson, S. & Brockhurst, M., 13 Oct 2021

    Article in PLoS Biol.

  24. Arable fields as potential reservoirs of biodiversity: earthworm populations increase in new leys

    Prendergast-Miller, M., Jones, D., Berdeni, D., Bird, S., Chapman, P. J., Firbank, L., Grayson, R., Helgason, T., Holden, J., Lappage, M., Leake, J. & Hodson, M. E., 1 Oct 2021

    Article in Science of the Total Environment

  25. The genome of the zoonotic malaria parasite Plasmodium simium reveals adaptations to host switching

    Mourier, T., de Alvarenga, D. A. M., Kaushik, A., de Pina-Costa, A., Douvropoulou, O., Guan, Q., Guzmán-Vega, F. J., Forrester, S., de Abreu, F. V. S., Júnior, C. B., de Souza Junior, J. C., Moreira, S. B., Hirano, Z. M. B., Pissinatti, A., Ferreira-da-Cruz, M. D. F., de Oliveira, R. L., Arold, S. T., Jeffares, D. C., Brasil, P., de Brito, C. F. A. & 3 others, Culleton, R., Daniel-Ribeiro, C. T. & Pain, A., 1 Oct 2021

    Article in BMC Biology

  26. Ozone production and precursor emission from wildfires in Africa

    Lee, J. D., Squires, F. A., Sherwen, T., Wilde, S. E., Cliff, S. J., Carpenter, L. J., Hopkins, J. R., Bauguitte, S. J., Reed, C., Barker, P., Allen, G., Bannan, T. J., Matthews, E., Mehra, A., Percival, C., Heard, D. E., Whalley, L. K., Ronnie, G. V., Seldon, S., Ingham, T. & 4 others, Keller, C. A., Knowland, K. E., Nisbet, E. G. & Andrews, S., 23 Sep 2021

    Article in Environmental Science: Atmospheres

  27. Building crannogs in the 9th–12th centuries AD in northern Scotland: an old tradition in a new landscape

    Stratigos, M. J. & Noble, G., 16 Sep 2021, Proceedings of RURALIA XIII Stirling, Scotland, September 2019. Leiden: Sidestone Press, p. 179-188 10 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)peer-review

  28. Species Diversity and Phylogenetic Relationships of Olive Lace Bugs (Hemiptera: Tingidae) Found in South Africa

    Hlaka, V., Guilbert, É., Smit, C., van Noort, S., Allsopp, E., Langley, J. & van Asch, B., 15 Sep 2021

    Article in Insects

  29. Protein acetylation in the critical biological processes in protozoan parasites

    Maran, S. R., Fleck, K., Monteiro-Teles, N. M., Isebe, T., Walrad, P., Jeffers, V., Cestari, I., Vasconcelos, E. J. R. & Moretti, N., 1 Sep 2021

    Review article in Trends in parasitology

  30. R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements

    Ellis, D. A., Reyes-Martín, F., Rodríguez-López, M., Cotobal, C., Sun, X. M., Saintain, Q., Jeffares, D. C., Marguerat, S., Tallada, V. A. & Bähler, J., 31 Aug 2021

    Article in PLoS Genetics

  31. Estimating the dwarfing rate of an extinct Sicilian elephant

    Baleka, S., Herridge, V. L., Catalano, G., Lister, A. M., Dickinson, M. R., Di Patti, C., Barlow, A., Penkman, K. E. H., Hofreiter, M. & Paijmans, J. L. A., 23 Aug 2021

    Article in Current Biology

  32. Mapping and Monitoring Zero-Deforestation Commitments

    Austin, K. G., Heilmayr, R., Benedict, J. J., Burns, D. N., Eggen, M., Grantham, H., Greenbury, A., Hill, J. K., Jenkins, C. N., Luskin, M. S., Manurung, T., Rasmussen, L. V., Rosoman, G., Rudorff, B., Satar, M., Smith, C. & Carlson, K. M., 18 Aug 2021

    Article in BioScience

  33. The structural basis for high-affinity uptake of lignin-derived aromatic compounds by proteobacterial TRAP transporters

    Bisson, C., Salmon, R. C., West, L., Rafferty, J. B., Hitchcock, A., Thomas, G. H. & Kelly, D. J., 18 Aug 2021

    Article in FEBS Journal

  34. A proteome-wide genetic investigation identifies several SARS-CoV-2-exploited host targets of clinical relevance

    Anisul, M., Shilts, J., Schwartzentruber, J., Hayhurst, J., Buniello, A., Mohammed, E. S. E., Zheng, J., Holmes, M., Ochoa, D., Carmona, M., Maranville, J., Gaunt, T. R., Emilsson, V., Gudnason, V., McDonagh, E. M., Wright, G. J., Ghoussaini, M. & Dunham, I., 17 Aug 2021

    Article in eLife

  35. Validating layer-specific VASO across species

    Huber, L., Poser, B. A., Kaas, A. L., Fear, E. J., Dresbach, S., Berwick, J., Goebel, R., Turner, R. & Kennerley, A. J., 15 Aug 2021

    Article in Neuroimage

  36. Cell-Free Total Biosynthesis of Plant Terpene Natural Products Using an Orthogonal Cofactor Regeneration System

    Bat-Erdene, U., Billingsley, J. M., Turner, W. C., Lichman, B. R., Ippoliti, F. M., Garg, N. K., O'Connor, S. E. & Tang, Y., 6 Aug 2021

    Article in ACS Catalysis

  37. Characterisation of a laser plasma betatron source for high resolution x-ray imaging

    Finlay, O. J., Gruse, J. N., Thornton, C., Allott, R., Armstrong, C. D., Baird, C. D., Bourgeois, N., Brenner, C., Cipiccia, S., Cole, J. M., Gregory, C., Jamison, S., Katzir, Y., Lopes, N. C., Mangles, S. P. D., Murphy, C. D., Najmudin, Z., Neely, D., Pickard, L. R., Potter, K. D. & 8 others, Rajeev, P. P., Rusby, D., Selwood, M. P., Symes, D. R., Underwood, C. I. D., Wood, J. C., Thomas, A. G. R. & Streeter, M. J. V., 1 Aug 2021

    Article in Plasma Physics and Controlled Fusion

  38. Soil quality regeneration by grass-clover leys in arable rotations compared to permanent grassland: effects on wheat yield and resilience to drought and flooding

    Berdeni, D., Turner, A., Grayson, R., Llanos, J., Holden, J., Firbank, L., Lappage, M., Hunt, SPF., Chapman, P. J., Hodson, M. E., Helgason, T., Watt, P. & Leake, J., 1 Aug 2021

    Article in Soil and Tillage Research

  39. Validation of a novel associative transcriptomics pipeline in Brassica oleracea: Identifying candidates for vernalisation response

    Woodhouse, S., He, Z., Woolfenden, H., Steuernagel, B., Haerty, W., Bancroft, I., Irwin, J. A., Morris, R. J. & Wells, R., 13 Jul 2021

    Article in BMC Genomics

  40. Biorefining Potential of Wild-Grown Arundo donax, Cortaderia selloana and Phragmites australis and the Feasibility of White-Rot Fungi-Mediated Pretreatments

    da Costa, R. M. F., Winters, A., Hauck, B., Martin, D., Bosch, M., Simister, R., Gomez, L. D., Batista de Carvalho, L. A. E. & Canhoto, J. M., 2 Jul 2021

    Article in Frontiers in Plant Science

  41. An invariant Trypanosoma vivax vaccine antigen inducing protective immunity

    Autheman, D., Crosnier, C., Clare, S., Goulding, D. A., Brandt, C., Harcourt, K., Tolley, C., Galaway, F., Khushu, M., Ong, H., Romero-Ramirez, A., Duffy, C. W., Jackson, A. P. & Wright, G. J., 1 Jul 2021

    Article in Nature

  42. Multi-omics Study of Planobispora rosea, Producer of the Thiopeptide Antibiotic GE2270A

    Del Carratore, F., Iorio, M., Pérez-Bonilla, M., Schmidt, K., Pérez-Redondo, R., Sosio, M., Macdonald, S. J., Gyulev, I. S., Tsigkinopoulou, A., Thomas, G. H., Genilloud, O., Rodríguez-García, A., Donadio, S., Breitling, R. & Takano, E., 22 Jun 2021

    Article in mSystems

  43. Rapid transformation of ambient absorbing aerosols from West African biomass burning

    Wu, H., Taylor, J. W., Langridge, J. M., Yu, C., Allan, J. D., Szpek, K., Cotterell, M. I., Williams, P. I., Flynn, M., Barker, P., Fox, C., Allen, G., Lee, J. & Coe, H., 21 Jun 2021

    Article in Atmospheric Chemistry and Physics

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