Search research publications and outputs

  1. 2021
  2. Hematopoietic stem cells retain functional potential and molecular identity in hibernation cultures

    Oedekoven, C. A., Belmonte, M., Bode, D., Hamey, F. K., Shepherd, M. S., Che, J. L. C., Boyd, G., McDonald, C., Belluschi, S., Diamanti, E., Bastos, H. P., Bridge, K. S., Göttgens, B., Laurenti, E. & Kent, D. G., 8 Jun 2021

    Article in Stem Cell Reports

  3. An early-morning gene network controlled by phytochromes and cryptochromes regulates photomorphogenesis pathways in Arabidopsis

    Balcerowicz, M., Mahjoub, M., Nguyen, D., Lan, H., Stoeckle, D., Conde, S., Jaeger, K., Wigge, P. A. & Ezer, D., 7 Jun 2021

    Article in Molecular plant

  4. Elucidating the multifunctional role of the cell wall components in the maize exploitation

    Gomez, L. D., Ana, LM., Malvar, R. A., Souto, X. C., Simister, R., Encina, A., Barros‑Rios, J., Pereira‑Crespo, S. & Santiago, R., 4 Jun 2021

    Article in BMC Plant Biology

  5. FTIR Screening to Elucidate Compositional Differences in Maize Recombinant Inbred Lines with ContrastingSaccharification Efficiency Yields

    López-Malvar, A., Santiago, R., Martin, D., Pereira dos Santos, I., Batista de Carvalho, L. A. E., Faas, L., Gomez, L. D. & da Costa, R. M. F., 2 Jun 2021

    Article in Agronomy

  6. Genome structural evolution in Brassica crops

    He, Z., Ji, R., Havlickova, L., Wang, L., Li, Y., Lee, H. T., Song, J., Koh, C., Yang, J., Zhang, M., Parkin, I. A. P., Wang, X., Edwards, D., King, G. J., Zou, J., Liu, K., Snowdon, R. J., Banga, S. S., Machackova, I. & Bancroft, I., 27 May 2021

    Article in Nature Plants

  7. The effectiveness of the protected area network of Great Britain

    Cunningham, C., Thomas, C. D., Morecroft, M. D., Crick, H. Q. P. & Beale, C. M., 4 May 2021

    Article in Biological Conservation

  8. Mixture models as a method for comparative sociality: social networks and demographic change in resident killer whales

    Ellis, S., Franks, D. W., Weiss, M., Cant, M. A., Domenici, P., Balcomb, K. C., Ellifrit, D. K. & Croft, D. P., 5 Apr 2021

    Article in Behavioral Ecology and Sociobiology

  9. Epitope Mapping of Exposed Tegument and Alimentary Tract Proteins Identifies Putative Antigenic Targets of the Attenuated Schistosome Vaccine

    Farias, L. P., Vance, G. M., Coulson, P. S., Vitoriano-Souza, J., Neto, A. P. D. S., Wangwiwatsin, A., Neves, L. X., Castro-Borges, W., McNicholas, S., Wilson, K. S., Leite, L. C. C. & Wilson, R. A., 3 Mar 2021

    Article in Frontiers in immunology

  10. Protein methyltransferase 7 deficiency in Leishmania major increases neutrophil associated pathology in murine model

    Alcoforado Diniz, J., Chaves, M. M., Vaselek, S., Miserani Magalhães, R. D., Ricci-Azevedo, R., de Carvalho, R. V. H., Lorenzon, L. B., Ferreira, T. R., Zamboni, D., Walrad, P. B., Volf, P., Sacks, D. L. & Cruz, A. K., 2 Mar 2021

    Article in PLOS NEGLECTED TROPICAL DISEASES

  11. Systematic functional analysis of Leishmania protein kinases identifies regulators of differentiation or survival

    Baker, N., Catta-Preta, C. M. C., Neish, R., Sadlova, J., Powell, B., Alves-Ferreira, E. V. C., Geoghegan, V., Carnielli, J. B. T., Newling, K., Hughes, C., Vojtkova, B., Anand, J., Mihut, A., Walrad, P. B., Wilson, L. G., Pitchford, J. W., Volf, P. & Mottram, J. C., 23 Feb 2021

    Article in Nature Communications

  12. Fast acting allosteric phosphofructokinase inhibitors block trypanosome glycolysis and cure acute African trypanosomiasis in mice

    McNae, I. W., Kinkead, J., Malik, D., Yen, L-H., Walker, M. K., Swain, C., Webster, S. P., Gray, N., Fernandes, P. M., Myburgh, E., Blackburn, E. A., Ritchie, R., Austin, C., Wear, M. A., Highton, A. J., Keats, A. J., Vong, A., Dornan, J., Mottram, J. C., Michels, P. A. M. & 2 others, Pettit, S. & Walkinshaw, M. D., 16 Feb 2021

    Article in Nature Communications

  13. Design of experiments driven optimization of alkaline pretreatment and saccharification for sugarcane bagasse

    Mota, T. R., Oliveira, D. M., Simister, R., Whitehead, C. B., Lanot, A., Dos Santos, W. D., Rezende, C. A., McQueen Mason, S. J. & Gomez, L. D., 1 Feb 2021

    Article in BIORESOURCE TECHNOLOGY

  14. Characterization of a new Leishmania major strain for use in a controlled human infection model

    Ashwin, H., Sadlova, J., Vojtkova, B., Becvar, T., Lypaczewski, P., Schwartz, E., Greensted, E., Van Bocxlaer, K., Pasin, M., Lipinski, K. S., Parkash, V., Matlashewski, G., Layton, A. M., Lacey, C. J. N., Jaffe, C. L., Volf, P. & Kaye, P., 11 Jan 2021

    Article in Nature Communications

  15. No evidence for basigin/CD147 as a direct SARS-CoV-2 spike binding receptor

    Shilts, J., Crozier, T. W. M., Greenwood, E. J. D., Lehner, P. J. & Wright, G. J., 11 Jan 2021

    Article in Scientific Reports

  16. Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp

    Farhat, S., Le, P., Kayal, E., Noel, B., Bigeard, E., Corre, E., Maumus, F., Florent, I., Alberti, A., Aury, J-M., Barbeyron, T., Cai, R., Da Silva, C., Istace, B., Labadie, K., Marie, D., Mercier, J., Rukwavu, T., Szymczak, J., Tonon, T. & 7 others, Alves-de-Souza, C., Rouzé, P., Van de Peer, Y., Wincker, P., Rombauts, S., Porcel, B. M. & Guillou, L., 6 Jan 2021

    Article in BMC Biology

  17. Facility level measurement of offshore oil and gas installations from a medium-sized airborne platform: method development for quantification and source identification of methane emissions

    France, J. L., Bateson, P., Dominutti, P., Allen, G., Andrews, S., Bauguitte, S., Coleman, M., Lachlan-Cope, T., Fisher, R. E., Huang, L., Jones, A. E., Lee, J., Lowry, D., Pitt, J., Purvis, R., Pyle, J., Shaw, J., Warwick, N., Weiss, A., Wilde, S. & 2 others, Witherstone, J. & Young, S., 5 Jan 2021

    Article in Atmospheric Measurement Techniques

  18. Elevational specialization and the monitoring of the effects of climate change in insects: beetles in a Brazilian rainforest mountain

    Colares, C., Roza, A. S., Mermudes, J. R. M., da Silveira, L. F. L., Khattar, G., Mayhew, P. J., Monteiro, R. F., Nunes, M. F. S. Q. C. & Macedo, M. V., Jan 2021

    Article in Ecological Indicators

  19. 2020
  20. Straw digestibility of Thai rice accessions

    Kophima, Y., Cheenacharoen, S., Simister, R., Gomez, L. D., McQueen-Mason, S. J. & Vuttipongchaikij, S., 30 Dec 2020

    Article in Agriculture and Natural Resources

  21. Coexpressed subunits of dual genetic origin define a conserved supercomplex mediating essential protein import into chloroplasts

    Ramundo, S., Asakura, Y., Salomé, P. A., Strenkert, D., Boone, M., Mackinder, L., Takafuji, K., Dinc, E., Rahire, M., Crèvecoeur, M., Magneschi, L., Schaad, O., Hippler, M., Jonikas, M. C., Merchant, S. S., Nakai, M., Rochaix, J-D. & Walter, P., 22 Dec 2020

    Article in Proceedings of the National Academy of Sciences of the United States of America

  22. Smallholder perceptions of land restoration activities: rewetting tropical peatland oil palm areas in Sumatra, Indonesia

    Ward, C. F. M., Stringer, L. C., Warren-Thomas, E. M., Agus, F., Crowson, M., Hamer, K. C., Hariyadi, B., Kartika, W. D., Lucey, J. M., McClean, C. J., Nurida, N. L., Petorelli, N., Saad, A., Andriyani, R., Ariani, T., Sriwahyuni, H. & Hill, J. K., 19 Dec 2020

    Article in Regional Environmental Change

  23. Evidence for shape coexistence and superdeformation in 24Mg

    Dowie, J. T. H., Kibédi, T., Jenkins, D. G., Stuchbery, A. E., Akber, A., Alshammari, H. A., Aoi, N., Avaa, A., Bignell, L. J., Chisapi, M. V., Coombes, B. J., Eriksen, T. K., Gerathy, M. S. M., Gray, T. J., Hoang, T. H., Ideguchi, E., Jones, P., Kumar Raju, M., Lane, G. J., McCormick, B. P. & 4 others, McKie, L. J., Mitchell, A. J., Spinks, N. J. & Tee, B. P. E., 10 Dec 2020

    Article in Physics Letters, Section B: Nuclear, Elementary Particle and High-Energy Physics

  24. Selection of a subspecies-specific diterpene gene cluster implicated in rice disease resistance

    Zhan, C., Lei, L., Liu, Z., Zhou, S., Yang, C., Zhu, X., Guo, H., Zhang, F., Peng, M., Zhang, M., Li, Y., Yang, Z., Sun, Y., Shi, Y., Li, K., Liu, L., Shen, S., Wang, X., Li, Y., Czechowski, T. & 9 others, Hasegawa, M., Graham, I. A., Tohge, T., Qu, L., Liu, X., Fernie, A. R., Chen, L-L., Yuan, M. & Luo, J., 7 Dec 2020

    Article in Nature Plants

  25. Fetal glycosylation defect due to ALG3 and GOG5 variants detected via amniocentesis: complex glycosylation defect with embryonic lethal phenotype

    Ferrer, A., Tzovenos Starosta, R., Ranatunga, W., Ungar, D., Kozicz, T., Klee, E., Rust, L., Wick, M. & Morava, E., Dec 2020

    Article in Molecular genetics and metabolism

  26. Single step syntheses of (1S)-aryl-tetrahydroisoquinolines by norcoclaurine synthases

    Lichman, B. R., Roddan, R., Sula, A., Fabiana, S., Mendez-Sanchez, D., Broomfield, J., Richter, M., Andexer, J., Ward, J. M., Keep, N. H. & Hailes, H. C., 13 Nov 2020

    Article in Communications Chemistry

  27. Low mannitol concentrations in Arabidopsis thaliana expressing Ectocarpus genes improve salt tolerance

    Rathor, P., Borza, T., Liu, Y., Qin, Y., Stone, S., Zhang, J., Hui, J. P. M., Berrue, F., Groisillier, A., Tonon, T., Yurgel, S., Potin, P. & Prithiviraj, B., 7 Nov 2020

    Article in Plants

  28. Identification of DHX9 as a cell cycle regulated nucleolar recruitment factor for CIZ1

    Thacker, U., Pauzaite, T., Tollitt, J., Twardowska, M., Harrison, C., Dowle, A., Coverley, D. & Copeland, N. A., 22 Oct 2020

    Article in Scientific Reports

  29. The clonal relation of primary upper urinary tract urothelial carcinoma and paired urothelial carcinoma of the bladder

    van Doeveren, T., Nakauma-Gonzalez, J. A., Mason, A. S., van Leenders, G. J. L. H., Zuiverloon, T. C. M., Zwarthoff, E. C., Meijssen, I. C., van der Made, A. C., van der Heijden, A. G., Hendricksen, K., van Rhijn, B. W. G., Voskuilen, C. S., van Riet, J., Dinjens, W. N. M., Dubbink, H. J., van de Werken, H. J. G. & Boormans, J. L., 13 Oct 2020

    Article in International Journal of Cancer

  30. Association mapping identifies quantitative trait loci (QTL) for digestibility in rice straw

    Nguyen, D. T., Gomez, L. D., Harper, A. L., Halpin, C., Waugh, R., Simister, R., Whitehead, C., Oakley, H., Nguyen, H. T., Nguyen, T. V., Duong, T. X. & McQueen Mason, S. J., 8 Oct 2020

    Article in Biotechnology for biofuels

  31. Uncovering a novel molecular mechanism for scavenging sialic acids in bacteria

    Bell, A., Severi, E., Lee, M., Monaco, S., Latousakis, D., Angulo, J., Thomas, G. H., Naismith, J. & Juge, N., 2 Oct 2020

    Article in Journal of Biological Chemistry

  32. Targeting the trypanosome kinetochore with CLK1 protein kinase inhibitors

    Saldivia Concepcion, M. A., Fang, E., Ma, X., Myburgh, E., Brambilla Carnielli Trindade, J., Bower-Lepts, C., Brown, E., Ritchie, R., Lakshminarayana, S. B., Chen, Y-L., Patra, D., Ornelas, E., Koh, H. X. Y., Williams, S., Supek, F., Paape, D., McCulloch, R., Kaiser, M., Barrett, M. P., Jiricek, J. & 3 others, Diagana, T. T., Mottram, J. C. & Rao, S. P. S., Oct 2020

    Article in Nature Microbiology

  33. Overview of the SPARC tokamak

    Creely, A. J., Greenwald, M. J., Ballinger, S. B., Brunner, D., Canik, J., Doody, J., Fülöp, T., Garnier, D. T., Granetz, R., Gray, T. K., Holland, C., Howard, N. T., Hughes, J. W., Irby, J. H., Izzo, V. A., Kramer, G. J., Kuang, A. Q., Labombard, B., Lin, Y., Lipschultz, B. & 25 others, Logan, N. C., Lore, J. D., Marmar, E. S., Montes, K., Mumgaard, R. T., Paz-Soldan, C., Rea, C., Reinke, M. L., Rodriguez-Fernandez, P., Särkimäki, K., Sciortino, F., Scott, S. D., Snicker, A., Snyder, P. B., Sorbom, B. N., Sweeney, R., Tinguely, R. A., Tolman, E. A., Umansky, M., Vallhagen, O., Varje, J., Whyte, D. G., Wright, J. C., Wukitch, S. J. & Zhu, J., 29 Sep 2020

    Article in Journal of Plasma Physics

  34. PsAA9A, a C1-specific AA9 lytic polysaccharide monooxigenase from the white-rot basidiomycete Pycnoporus sanguineus

    Garrido, M. M., Landon, M., Sabbadin, F., Valacco, M. P., Couto, A., Bruce, N. C., Wirth, S. A. & Campos, E., 23 Sep 2020

    Article in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

  35. Towards Terawatt-Scale Spectrally Tunable Terahertz Pulses via Relativistic Laser-Foil Interactions

    Liao, G. Q., Liu, H., Scott, G. G., Zhang, Y. H., Zhu, B. J., Zhang, Z., Li, Y. T., Armstrong, C., Zemaityte, E., Bradford, P., Rusby, D. R., Neely, D., Huggard, P. G., Mckenna, P., Brenner, C. M., Woolsey, N. C., Wang, W. M., Sheng, Z. M. & Zhang, J., 18 Sep 2020

    Article in Physical Review X

  36. Transcriptomics predicts compound synergy in drug and natural product treated glioblastoma cells

    Pruteanu, L-L., Kopanitsa, L., Módos, D., Kletnieks, E., Samarova, E., Bender, A., Gomez, L. D. & Bailey, D. S., 18 Sep 2020

    Article in PLoS ONE

  37. Fine scale spatial investigation of multiple insecticide resistance and underlying target-site and metabolic mechanisms in Anopheles gambiae in central Côte d’Ivoire

    Oumbouke, W. A., Pignatelli, P., Barreaux, A. M. G., Tia, I. Z., Koffi, A. A., Ahoua Alou, L. P., Sternberg, E. D., Thomas, M. B., Weetman, D. & N’Guessan, R., 15 Sep 2020

    Article in Scientific Reports

  38. A Salmochelin S4-inspired Ciprofloxacin Trojan Horse Conjugate

    Sanderson, T., Black, C., Southwell, J., Wilde, E., Pandey, A., Herman, R., Thomas, G. H., Boros, E., Duhme-Klair, A. K. & Routledge, A., 11 Sep 2020

    Article in ACS Infectious Diseases

  39. The Structure of the Cysteine-Rich Domain of Plasmodium falciparum P113 Identifies the Location of the RH5 Binding Site.

    Campeotto, I., Galaway, F., Mehmood, S., Barfod, L. K., Quinkert, D., Kotraiah, V., Phares, T. W., Wright, K. E., Snijders, A. P., Draper, S. J., Higgins, M. K. & Wright, G. J., 8 Sep 2020

    Article in MBio

  40. Senna reticulata: a viable option for bioenergy production in the Amazonian region

    Grandis, A., Arenque-Musa, B. C., Martins, M. C. M., Maciel, T. O., Simister, R., Gomez, L. D. & Buckeridge, M. S., 29 Aug 2020

    Article in BioEnergy Research

  41. Cell wall remodeling under salt stress: Insights into changes in polysaccharides, feruloylation, lignification, and phenolic metabolism in maize

    Oliveira, D. M., Mota, T. R., Salatta, F. V., Sinzker, R. C., Končitíková, R., Kopečný, D., Simister, R., Silva, M., Goeminne, G., Morreel, K., Rencoret, J., Gutiérrez, A., Tryfona, T., Marchiosi, R., Dupree, P., Del Río, J. C., Boerjan, W., McQueen-Mason, S. J., Gomez, L. D., Ferrarese-Filho, O. & 1 others, Dos Santos, W. D., 20 Aug 2020

    Article in Plant, Cell and Environment

  42. Downy Mildew effector HaRxL21 interacts with the transcriptional repressor TOPLESS to promote pathogen susceptibility

    Harvey, S. E., Kumari, P., Lapin, D., Griebel, T., Hickman, R., Guo, W., Zhang, R., Parker, J. E., Beynon, J., Denby, K. & Steinbrenner, J., 12 Aug 2020

    Article in PLOS PATHOGENS

  43. A high-contiguity Brassica nigra genome localizes active centromeres and defines the ancestral Brassica genome

    Sampath, P., Koh, C. S., Jin, L., Buchwaldt, M., Higgins, E. E., Zheng, C., Sankoff, D., Robinson, S. J., Kagale, S., Navabi, Z-K., Tang, L., Horner, K. N., He, Z., Bancroft, I., Chalhoub, B., Sharpe, A. G. & Parkin, I. A. P., 10 Aug 2020

    Article in Nature Plants

  44. Conservation set-asides improve carbon storage and support associated plant diversity in certified sustainable oil palm plantations  

    Fleiss, S., Waddell, E., Ola, B. B., Banin, L. F., Benedick, S., Sailim, A. B., Chapman, D. S., Jelling, A., King, H., McClean, C. J., Yeong, K. L. & Hill, J. K., Aug 2020

    Article in Biological Conservation

  45. Novel Thienopyrimidine Inhibitors of Leishmania N-Myristoyltransferase with On-Target Activity in Intracellular Amastigotes

    Bell, A. S., Yu, Z., Hutton, J. A., Wright, M. H., Brannigan, J. A., Paape, D., Roberts, S. M., Sutherell, C. L., Ritzefeld, M., Wilkinson, A. J., Smith, D. F., Leatherbarrow, R. J. & Tate, E. W., 23 Jul 2020

    Article in JOURNAL OF MEDICINAL CHEMISTRY

  46. B-cell Zone Reticular Cell Microenvironments Shape CXCL13 Gradient Formation

    Coles, M. C., O'Toole, P. J., Lacey, C. J. N., Cosgrove, J., Novkovic, M., Albrecht, S., Zhou, Z., Pikor, N. B., Onder, L., Morbe, U., Cupovic, J., Miller, H., Alden, K. J., Thuery, A. L. M. I., Pinter, R., Jarrett, S., Taylor, E., Venetz, D., Heller, M., Uguccioni, M. & 11 others, Legler, D. F., Coatesworth, A., Polak, W. G., Cupedo, T., Manoury, B., Thelen, M., Stein, J. V., Wolf, M., Leake, M. C., Timmis, J. & Ludewig, B., 22 Jul 2020

    Article in Nature Communications

  47. Isoprostanoid profiling of marine microalgae

    Vigor, C., Oger, C., Reversat, G., Rocher, A., Zhou, B., Linares-Maurizi, A., Guy, A., Bultel-Ponce, V., Galano, J-M., Vercauteren, J., Durand, T., Potin, P., Tonon, T. & Leblanc, C., 18 Jul 2020

    Article in Biomolecules

  48. Experimentally assessing the effect of search effort on snare detectability

    Ibbett, H., Milner-Gulland, EJ., Beale, C. M., Dobson, A., Griffin, O., O'Kelly, H. J. & Keane, A., Jul 2020

    Article in Biological Conservation

  49. The influence of feeding behaviour and temperature on the capacity of mosquitoes to transmit malaria

    Suh, E., Grossman, M. K., Waite, J. L., Dennington, N. L., Sherrard-Smith, E., Churcher, T. S. & Thomas, M. B., Jul 2020

    Article in Nature Ecology and Evolution

  50. Global Transcriptomic Responses of Roseithermus sacchariphilus Strain RA in Media Supplemented with Beechwood Xylan

    Liew, K. J., Bruce, N. C., Sani, R. K., Chong, C. S., Yaakop, A. S., Shamsir, M. S. & Goh, K. M., 29 Jun 2020

    Article in Microorganisms

  51. Joint Selenium-Iodine Supply and Arbuscular Mycorrhizal Fungi Inoculation Affect Yield and Quality of Chickpea Seeds and Residual Biomass

    Golubkina, N., Gomez, L. D., Kekina, H., Cozzolino, E., Simister, R., Tallarita, A., Torino, V., Koshevarov, A., Cuciniello, A., Maiello, R., Cenvinzo, V. & Caruso, G., 27 Jun 2020

    Article in Plants

  52. A Brassica napus Reductase Gene Dissected by Associative Transcriptomics Enhances Plant Adaption to Freezing Stress

    Huang, Y., Hussain, M. A., Luo, D., Xu, H., Zeng, C., Havlickova, L., Bancroft, I., Tian, Z., Zhang, X., Cheng, Y., Zou, X., Lu, G. & Lv, Y., 26 Jun 2020

    Article in Frontiers in Plant Science

  53. Human GBP1 binds LPS to initiate assembly of a caspase-4 activating platform on cytosolic bacteria

    Santos, J. C., Boucher, D., Schneider, L. K., Demarco, B., Dilucca, M., Shkarina, K., Heilig, R., Chen, K. W., Lim, R. Y. H. & Broz, P., 24 Jun 2020

    Article in Nature Communications

  54. Cost, risk and avoidance of inbreeding in a cooperatively breeding bird

    Leedale, A., Simeoni, M., Sharp, S. P., Green, J. P., Slate, J., Lachlan, R., Robinson, E. J. H. & Hatchwell, B., 22 Jun 2020

    Article in Proceedings of the National Academy of Sciences USA

  55. Screening of a library of recombinant Schistosoma mansoni proteins with sera from murine and human controlled infections identifies early serological markers.

    Crosnier, C., Hokke, C. H., Protasio, A. V., Brandt, C., Rinaldi, G., Langenberg, M. C. C., Clare, S., Janse, J. J., Wilson, S., Berriman, M., Roestenberg, M. & Wright, G. J., 10 Jun 2020

    Article in The Journal of Infectious Diseases

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