Single-molecule imaging of DNA gyrase activity in living Escherichia coli

Mathew Stracy, Adam Wollman, Elzbieta Kaja, Jacek Gapinski, Ji-Eun Lee, Victoria A. Leek, Shannon J. McKie, L. A. Mitchenall, Anthony Maxwell, David J Sherratt, Mark Christian Leake, Pawel Zawadzki

Research output: Contribution to journalArticlepeer-review


Bacterial DNA gyrase introduces negative supercoils into chromosomal DNA and relaxes positive supercoils introduced by replication and transiently by transcription. Removal of these positive supercoils is essential for replication fork progression and for the overall unlinking of the two duplex DNA strands, as well as for ongoing transcription. To address how gyrase copes with these topological challenges, we used high-speed single-molecule fluorescence imaging in live Escherichia coli cells. We demonstrate that at least 300 gyrase molecules are stably bound to the chromosome at any time, with ~12 enzymes enriched near each replication fork. Trapping of reaction intermediates with ciprofloxacin revealed complexes undergoing catalysis. Dwell times of ~2 s were observed for the dispersed gyrase molecules, which we propose maintain steady-state levels of negative supercoiling of the chromosome. In contrast, the dwell time of replisome-proximal molecules was ~8 s, consistent with these catalyzing processive positive supercoil relaxation in front of the progressing replisome.
Original languageEnglish
Pages (from-to)210-220
Number of pages11
JournalNucleic Acids Research
Issue number1
Early online date16 Nov 2018
Publication statusPublished - 10 Jan 2019

Bibliographical note

© The Author(s) 2018.


  • Catalysis
  • DNA Gyrase/chemistry
  • DNA, Superhelical/chemistry
  • DNA-Binding Proteins/chemistry
  • Escherichia coli/enzymology
  • Protein Binding
  • Single Molecule Imaging

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