Tapestry: validate and edit small eukaryotic genome assemblies with long reads

Research output: Working paper


Summary: Small eukaryotic genome assemblies based on long reads are often close to complete, but
still require validation and editing. Tapestry produces an interactive report which can be used to validate, sort and filter the contigs in a raw genome assembly, taking into account GC content, telomeres,
read depths, contig alignments and read alignments. The report can be shared with collaborators and
included as supplemental material in publications.
Availability: Source code is freely available at https://github.com/johnomics/tapestry. Package is freely
available in Bioconda (https://anaconda.org/bioconda/tapestry).
Contact: [email protected]
Original languageEnglish
Publication statusPublished - 25 Apr 2020

Publication series

PublisherCold Spring Harbor Laboratory Press

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