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The 1.5-angstrom Structure of XplA-heme, an Unusual Cytochrome P450 Heme Domain That Catalyzes Reductive Biotransformation of Royal Demolition Explosive

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JournalJournal of Biological Chemistry
DatePublished - 9 Oct 2009
Issue number41
Volume284
Number of pages9
Pages (from-to)28467-28475
Original languageEnglish

Abstract

XplA is a cytochrome P450 of unique structural organization, consisting of a heme- domain that is C-terminally fused to its native flavodoxin redox partner. XplA, along with flavodoxin reductase XplB, has been shown to catalyze the breakdown of the nitramine explosive and pollutant hexahydro-1,3,5-trinitro-1,3,5-triazine (royal demolition explosive) by reductive denitration. The structure of the heme domain of XplA (XplA-heme) has been solved in two crystal forms: as a dimer in space group P2(1) to a resolution of 1.9 angstrom and as a monomer in space group P2(1)2(1)2 to a resolution of 1.5 angstrom, with the ligand imidazole bound at the heme iron. Although it shares the overall fold of cytochromes P450 of known structure, XplA-heme is unusual in that the kinked I-helix that traverses the distal face of the heme is broken by Met-394 and Ala-395 in place of the well conserved Asp/Glu plus Thr/Ser, important in oxidative P450s for the scission of the dioxygen bond prior to substrate oxygenation. The heme environment of XplA-heme is hydrophobic, featuring a cluster of three methionines above the heme, including Met-394. Imidazole was observed bound to the heme iron and is in close proximity to the side chain of Gln-438, which is situated over the distal face of the heme. Imidazole is also hydrogen-bonded to a water molecule that sits in place of the threonine side-chain hydroxyl exemplified by Thr-252 in Cyt-P450cam. Both Gln-438 -> Ala and Ala-395 -> Thr mutants of XplA-heme displayed markedly reduced activity compared with the wild type for royal demolition explosive degradation when combined with surrogate electron donors.

    Research areas

  • HEXAHYDRO-1,3,5-TRINITRO-1,3,5-TRIAZINE RDX, MOLECULAR-REPLACEMENT, CRYSTAL-STRUCTURES, DIOXYGEN COMPLEX, WILD-TYPE, DEGRADATION, RHODOCOCCUS, MECHANISM, SYSTEM, P450

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