The York Research Database

Updated restraint dictionaries for carbohydrates in the pyranose form

Atanasova, M., Nicholls, R. A., Joosten, R. P. & Agirre, J., 1 Apr 2022

Article in Acta Crystallographica Section D: Structural Biology

2.4-Å structure of the double-ring Gemmatimonas phototrophica photosystem

Qian, P., Gardiner, A. T., Šímová, I., Naydenova, K., Croll, T. I., Jackson, P. J., Nupur, Kloz, M., Čubáková, P., Kuzma, M., Zeng, Y., Castro-Hartmann, P., van Knippenberg, B., Goldie, K. N., Kaftan, D., Hrouzek, P., Hájek, J., Agirre, J., Siebert, C. A., Bína, D. & 7 others, Sader, K., Stahlberg, H., Sobotka, R., Russo, C. J., Polívka, T., Hunter, C. N. & Koblížek, M., 16 Feb 2022

Article in Science Advances

Towards consistency in geometry restraints for carbohydrates in the pyranose form: Modern dictionary generators reviewed

Joosten, R. P., Nicholls, R. A. & Agirre, J., 2022

Article in Current Medicinal Chemistry

Iris: Interactive all-in-one graphical validation of 3D protein model iterations

Rochira, W. & Agirre, J., 19 Oct 2020

Article in Protein Science

Leveraging glycomics data in glycoprotein 3D structure validation with Privateer

Bagdonas, H., Ungar, D. & Agirre, J., 9 Oct 2020

Article in Beilstein Journal of Organic Chemistry

The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases

Tang, T. T. L., Stowell, J. A. W., Hill, C. H. & Passmore, L. A., 1 Jun 2019

Article in Nature structural & molecular biology

Cryo-EM structures of complex I from mouse heart mitochondria in two biochemically defined states

Agip, A-N. A., Blaza, J. N., Bridges, H. R., Viscomi, C., Rawson, S., Muench, S. P. & Hirst, J., 1 Jul 2018

Article in Nature Structural & Molecular Biology

Molecular architecture of the complete COG tethering complex

Ha, J. Y., Chou, H-T., Ungar, D., Yip, C. K., Walz, T. & Hughson, F. M., 18 Jul 2016

Article in Nature Structural & Molecular Biology

Structural characterization of human heparanase reveals insights into substrate recognition

Wu, L., Viola, C. M., Brzozowski, A. M. & Davies, G. J., 16 Nov 2015

Article in Nature Structural & Molecular Biology